Spo06665 (gene)

Overview
NameSpo06665
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionAP2-like ethylene-responsive transcription factor SNZ, putative
Locationchr2 : 49074113 .. 49074622 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATAACAACAACATGGTGACTGATTTTCAGCAATCACAACAACGACAACTAACCGAGCTAATACAAACCCTCGAACAAGCTACTTTAATGGCGAAACAACTCCCCACAACCACCGATCCTGATCACCACCGGCTTATCTTTTCTTCGCTCTCCTCTGCCCAACTTTCTCTTTCCTCCTTCCTCTCTCTCCACCCCAACAACAACAACGCCGATAATTCCGTCTCCTCCGCCGCCGTCGCAGATGATGAGCCGATGATGGCCGCTGATGATGGAGACGAGGAGCTGATGTCGAAAGACTCGTCAATGGATAGAGTGGAGGAAAGGTTGAGAGAGTGCCTCTACATTCAGAATAAGCGGCCGAAAAGACCGCTTTCTCCTTCGTTCATCGCCGCCGTAGAACGGCGGAATTTGGAGGAGAGAGAATTTATAGAGTTTTCGGCGGATGTTGATCCTGTTGCTACTCGGTTGAGGAATTTGGACCTTGTTTTTCAATTTCATGGCTAA

mRNA sequence

ATGGAGAATAACAACAACATGGTGACTGATTTTCAGCAATCACAACAACGACAACTAACCGAGCTAATACAAACCCTCGAACAAGCTACTTTAATGGCGAAACAACTCCCCACAACCACCGATCCTGATCACCACCGGCTTATCTTTTCTTCGCTCTCCTCTGCCCAACTTTCTCTTTCCTCCTTCCTCTCTCTCCACCCCAACAACAACAACGCCGATAATTCCGTCTCCTCCGCCGCCGTCGCAGATGATGAGCCGATGATGGCCGCTGATGATGGAGACGAGGAGCTGATGTCGAAAGACTCGTCAATGGATAGAGTGGAGGAAAGGTTGAGAGAGTGCCTCTACATTCAGAATAAGCGGCCGAAAAGACCGCTTTCTCCTTCGTTCATCGCCGCCGTAGAACGGCGGAATTTGGAGGAGAGAGAATTTATAGAGTTTTCGGCGGATGTTGATCCTGTTGCTACTCGGTTGAGGAATTTGGACCTTGTTTTTCAATTTCATGGCTAA

Coding sequence (CDS)

ATGGAGAATAACAACAACATGGTGACTGATTTTCAGCAATCACAACAACGACAACTAACCGAGCTAATACAAACCCTCGAACAAGCTACTTTAATGGCGAAACAACTCCCCACAACCACCGATCCTGATCACCACCGGCTTATCTTTTCTTCGCTCTCCTCTGCCCAACTTTCTCTTTCCTCCTTCCTCTCTCTCCACCCCAACAACAACAACGCCGATAATTCCGTCTCCTCCGCCGCCGTCGCAGATGATGAGCCGATGATGGCCGCTGATGATGGAGACGAGGAGCTGATGTCGAAAGACTCGTCAATGGATAGAGTGGAGGAAAGGTTGAGAGAGTGCCTCTACATTCAGAATAAGCGGCCGAAAAGACCGCTTTCTCCTTCGTTCATCGCCGCCGTAGAACGGCGGAATTTGGAGGAGAGAGAATTTATAGAGTTTTCGGCGGATGTTGATCCTGTTGCTACTCGGTTGAGGAATTTGGACCTTGTTTTTCAATTTCATGGCTAA

Protein sequence

MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNKRPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06665.1Spo06665.1mRNA


Homology
BLAST of Spo06665.1 vs. NCBI nr
Match: gi|902181506|gb|KNA09760.1| (hypothetical protein SOVF_150670 [Spinacia oleracea])

HSP 1 Score: 319.7 bits (818), Expect = 3.100e-84
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1

		  

Query: 1   MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS 60
           MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS
Sbjct: 1   MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS 60

Query: 61  SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK 120
           SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK
Sbjct: 61  SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK 120

Query: 121 RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG
Sbjct: 121 RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 169

BLAST of Spo06665.1 vs. NCBI nr
Match: gi|731361411|ref|XP_010692340.1| (PREDICTED: uncharacterized protein LOC104905481 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 205.7 bits (522), Expect = 6.400e-50
Identity = 115/168 (68.45%), Postives = 135/168 (80.36%), Query Frame = 1

		  

Query: 5   NNMVTDFQQSQQ-RQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFL 64
           N MVTD  Q QQ +QL +LIQ+LEQATLMAKQLP  +D D HRLI SSLSSAQLSLSSFL
Sbjct: 59  NKMVTDVHQLQQSQQLNDLIQSLEQATLMAKQLPAISDSDQHRLILSSLSSAQLSLSSFL 118

Query: 65  SLHPNNNNADNSVSSAAVADDEPMMAAD--DGDEELMSKDSSMDRVEERLRECLYIQNKR 124
           +LH NNN ADNSVS A V+DD+PM+A D  D DEE +SKDSSM+RVEE++R+ L IQNKR
Sbjct: 119 TLHINNNYADNSVSCADVSDDDPMVAVDDEDDDEEQISKDSSMERVEEKMRDSLSIQNKR 178

Query: 125 PKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           PKRPLSPS ++A+ERR +EERE +  S D DP+  R R +DLVFQFHG
Sbjct: 179 PKRPLSPSSVSALERRRIEERESVRVSPDFDPLGNRSRKIDLVFQFHG 226

BLAST of Spo06665.1 vs. NCBI nr
Match: gi|743829184|ref|XP_011023446.1| (PREDICTED: uncharacterized protein LOC105124927 [Populus euphratica])

HSP 1 Score: 127.5 bits (319), Expect = 2.200e-26
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 1

		  

Query: 19  LTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLSLHPNNNN------- 78
           L +LI +LEQATLMAKQLP+TTDP H   I+SSL  A   LSSFLS +    +       
Sbjct: 11  LPDLILSLEQATLMAKQLPSTTDPTHLLQIYSSLHQAHHHLSSFLSQNHQLPSFPLQPPP 70

Query: 79  ADNSVSSAAVAD---DEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNKRPKRPLSP 138
            +NS+SSA  AD   DEPM   DD DEE  +K  S+++VEER+R+C +I+NKRPKRPLSP
Sbjct: 71  QENSLSSATGADENGDEPMQVGDD-DEENSNKVVSIEKVEERMRDC-FIKNKRPKRPLSP 130

Query: 139 SFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           S +A  E R + +  F       DP  TRLR LDL++QFHG
Sbjct: 131 STVAVAEERRMYDDGFGGGIVGFDPRETRLRALDLIYQFHG 169

BLAST of Spo06665.1 vs. NCBI nr
Match: gi|566203064|ref|XP_002320095.2| (hypothetical protein POPTR_0014s07300g [Populus trichocarpa])

HSP 1 Score: 125.9 bits (315), Expect = 6.500e-26
Identity = 84/163 (51.53%), Postives = 103/163 (63.19%), Query Frame = 1

		  

Query: 19  LTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLS--------LHPNNN 78
           L +LI +LEQA LMAKQLP+TTDP+H   I+SSL  A   LSS LS        L P   
Sbjct: 10  LPDLILSLEQAALMAKQLPSTTDPNHLLQIYSSLHQAHQHLSSILSQNQLPSFPLPPPPP 69

Query: 79  NADNSVSSAAVADD---EPMMAADDGD-EELMSKDSSMDRVEERLRECLYIQNKRPKRPL 138
             +NS+SSA  AD+   EPM   DD D EE  +K  S+D+VE R+R+C +I+NKRPKRPL
Sbjct: 70  PQENSLSSATGADENGNEPMQVGDDDDYEENSNKVVSIDKVEVRMRDC-FIKNKRPKRPL 129

Query: 139 SPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           SPS +A  E R L +  F       DP  TRLR LDL++QFHG
Sbjct: 130 SPSTVAVAEERRLSDDGFRGGIMGFDPHGTRLRALDLIYQFHG 171

BLAST of Spo06665.1 vs. NCBI nr
Match: gi|1009162260|ref|XP_015899342.1| (PREDICTED: uncharacterized protein LOC107432670 [Ziziphus jujuba])

HSP 1 Score: 124.8 bits (312), Expect = 1.400e-25
Identity = 88/176 (50.00%), Postives = 111/176 (63.07%), Query Frame = 1

		  

Query: 13  QSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLS----LHPN 72
           Q+    L ELI +LEQA LMAKQLPTTTDP HH  I+SSL      LS+FLS    L P 
Sbjct: 8   QAVNPPLPELILSLEQAALMAKQLPTTTDPTHHFQIYSSLHQTHHHLSTFLSRTTPLFPQ 67

Query: 73  NNN----ADNSVSSAAVA------DDEPMMAADDG--DEEL---MSKDSSMDRVEERLRE 132
             +    A+NS+SSA  A       +EPM   DD   D+++    SK +++DRVEE++++
Sbjct: 68  PLHLAPPAENSLSSATGAVAGGDNGNEPMQVGDDNGYDDDVGEGNSKGNTVDRVEEKMKD 127

Query: 133 CLYIQNKRPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           C +I+NKRPKRPLSPS  A VE R L +  FI      DP ATRL+ LDLV+QFHG
Sbjct: 128 C-FIKNKRPKRPLSPSAAALVEERRLNDGGFIGGFMGFDPHATRLKALDLVYQFHG 182

BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRB2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150670 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.100e-84
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1

		  

Query: 1   MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS 60
           MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS
Sbjct: 1   MENNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLS 60

Query: 61  SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK 120
           SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK
Sbjct: 61  SFLSLHPNNNNADNSVSSAAVADDEPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNK 120

Query: 121 RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG
Sbjct: 121 RPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 169

BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EAW1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g019940 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.500e-50
Identity = 115/168 (68.45%), Postives = 135/168 (80.36%), Query Frame = 1

		  

Query: 5   NNMVTDFQQSQQ-RQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFL 64
           N MVTD  Q QQ +QL +LIQ+LEQATLMAKQLP  +D D HRLI SSLSSAQLSLSSFL
Sbjct: 59  NKMVTDVHQLQQSQQLNDLIQSLEQATLMAKQLPAISDSDQHRLILSSLSSAQLSLSSFL 118

Query: 65  SLHPNNNNADNSVSSAAVADDEPMMAAD--DGDEELMSKDSSMDRVEERLRECLYIQNKR 124
           +LH NNN ADNSVS A V+DD+PM+A D  D DEE +SKDSSM+RVEE++R+ L IQNKR
Sbjct: 119 TLHINNNYADNSVSCADVSDDDPMVAVDDEDDDEEQISKDSSMERVEEKMRDSLSIQNKR 178

Query: 125 PKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           PKRPLSPS ++A+ERR +EERE +  S D DP+  R R +DLVFQFHG
Sbjct: 179 PKRPLSPSSVSALERRRIEERESVRVSPDFDPLGNRSRKIDLVFQFHG 226

BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Match: B9IC74_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07300g PE=4 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 4.500e-26
Identity = 84/163 (51.53%), Postives = 103/163 (63.19%), Query Frame = 1

		  

Query: 19  LTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLS--------LHPNNN 78
           L +LI +LEQA LMAKQLP+TTDP+H   I+SSL  A   LSS LS        L P   
Sbjct: 10  LPDLILSLEQAALMAKQLPSTTDPNHLLQIYSSLHQAHQHLSSILSQNQLPSFPLPPPPP 69

Query: 79  NADNSVSSAAVADD---EPMMAADDGD-EELMSKDSSMDRVEERLRECLYIQNKRPKRPL 138
             +NS+SSA  AD+   EPM   DD D EE  +K  S+D+VE R+R+C +I+NKRPKRPL
Sbjct: 70  PQENSLSSATGADENGNEPMQVGDDDDYEENSNKVVSIDKVEVRMRDC-FIKNKRPKRPL 129

Query: 139 SPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           SPS +A  E R L +  F       DP  TRLR LDL++QFHG
Sbjct: 130 SPSTVAVAEERRLSDDGFRGGIMGFDPHGTRLRALDLIYQFHG 171

BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Match: B9GPU3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15440g PE=4 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.700e-25
Identity = 88/177 (49.72%), Postives = 108/177 (61.02%), Query Frame = 1

		  

Query: 3   NNNNMVTDFQQSQQRQLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSF 62
           NNNN            L +LI +LEQATLMAKQLP+TTDP H   I+SSL  A   LSSF
Sbjct: 2   NNNNTTPP-------PLPDLILSLEQATLMAKQLPSTTDPTHLLQIYSSLHHAHHHLSSF 61

Query: 63  LSLHPNNNN-------ADNSVSSAAVAD---DEPMMAADDGDEELMSKDSSMDRVEERLR 122
           LS +    +        +NS+SSA  AD   DEPM   DD DEE  +K  S+++VEE +R
Sbjct: 62  LSQNHQLPSFPLQPPPQENSLSSATGADENGDEPMQVGDD-DEENSNKVVSIEKVEEGMR 121

Query: 123 ECLYIQNKRPKRPLSPSFIAAVERRNLEEREFIEFSADVDPVATRLRNLDLVFQFHG 170
           +C +I+NKRPKRPLSPS +A  E R L +  F       DP  TRLR LDL++QFHG
Sbjct: 122 DC-FIKNKRPKRPLSPSTVAVAEERRLYDDGFGGGIVGFDPRETRLRALDLIYQFHG 169

BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Match: A0A067H1W1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030684mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.400e-24
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 1

		  

Query: 20  TELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLS---LHPNNNNADNSV 79
           TELI +LE+ATLMAKQLP TTDP H   I+S L  A  +LSSFLS   L       +NS+
Sbjct: 19  TELILSLERATLMAKQLPATTDPTHRMQIYSYLQQANRNLSSFLSNTQLPTQATENENSL 78

Query: 80  SSAAVADD---EPMMAADDGDEELMSKDSSMDRVEERLRECLYIQNKRPKRPLSPSFIAA 139
           SS+A   D   +PM   D  +E+  +  +++DRVEER+R C +I+NKR KRPLSPS +AA
Sbjct: 79  SSSATRGDGDCDPMEVGDHEEED--NSKTTIDRVEERMRNC-FIKNKRAKRPLSPSSMAA 138

Query: 140 VERRNLEEREFIEFS--ADVDPVATRLRNLDLVFQFHG 170
            E   L E  F+  S     DP  T+LR LDLV+QFHG
Sbjct: 139 AEENRLYEDGFLGGSNAYGFDPNGTKLRALDLVYQFHG 173

BLAST of Spo06665.1 vs. TAIR (Arabidopsis)
Match: AT1G01840.1 (unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.800e-19
Identity = 71/155 (45.81%), Postives = 97/155 (62.58%), Query Frame = 1

		  

Query: 18  QLTELIQTLEQATLMAKQLPTTTDPDHHRLIFSSLSSAQLSLSSFLSLHPNNNNADNSVS 77
           Q+ ELI +LEQATLMA+Q+ TT    +  L  SSL  A   LS+FL+  P    A+ S S
Sbjct: 6   QVAELISSLEQATLMAQQIGTTVG-QNQLLQISSLRIAHQRLSAFLASIPTAE-AEKSFS 65

Query: 78  SAAVADDEPMMAADD--GDEELMSKD--SSMDRVEERLRECLYIQNKRPKRPLSPSFIAA 137
           S      EPM   ++  G+ E   ++  S++++VEE++REC +I+NKR KRPLSPS  A 
Sbjct: 66  SV-----EPMQLGEEEKGEAEPAEEERYSAIEKVEEKMREC-FIRNKRLKRPLSPSS-AV 125

Query: 138 VERRNLEEREFIEFSADVDPVATRLRNLDLVFQFH 169
           VE    EER   ++  D DP AT+LR LDL++QFH
Sbjct: 126 VETSATEERSGRDYGFDSDPHATKLRALDLIYQFH 151

The following BLAST results are available for this feature:
BLAST of Spo06665.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902181506|gb|KNA09760.1|3.1e-84100.hypothetical protein SOVF_1506... [more]
gi|731361411|ref|XP_010692340.1|6.4e-5068.4PREDICTED: uncharacterized pro... [more]
gi|743829184|ref|XP_011023446.1|2.2e-2652.1PREDICTED: uncharacterized pro... [more]
gi|566203064|ref|XP_002320095.2|6.5e-2651.5hypothetical protein POPTR_001... [more]
gi|1009162260|ref|XP_015899342.1|1.4e-2550.0PREDICTED: uncharacterized pro... [more]
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BLAST of Spo06665.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QRB2_SPIOL2.1e-84100.Uncharacterized protein OS=Spi... [more]
A0A0J8EAW1_BETVU4.5e-5068.4Uncharacterized protein OS=Bet... [more]
B9IC74_POPTR4.5e-2651.5Uncharacterized protein OS=Pop... [more]
B9GPU3_POPTR1.7e-2549.7Uncharacterized protein OS=Pop... [more]
A0A067H1W1_CITSI9.4e-2450.6Uncharacterized protein OS=Cit... [more]
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BLAST of Spo06665.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06665.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G01840.12.8e-1945.8unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37697FAMILY NOT NAMEDcoord: 7..169
score: 3.7

RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo194460.67Barchart | Table