Spo08793 (gene)

Overview
NameSpo08793
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase subunit 10-like protein
Locationchr1 : 42813786 .. 42817663 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGATTTTTTTTATGTTTGTAAAAGAGATACTCCATTAATTGGAAAAATCGGAAACACACCTCTCTTTTCGAAACCTTTTCACCACAGCATCCCTCACTTCCCGGCGCGCGCGGAGTTTTCCCCCACTACGTCGCCGCCGCAATTGATAGTTCTACCGGAAAACCATCTCTTTCTTCTGCCGTGAAGTGTGAAGTACTAGGGAAACCGGAAACAAAGGCCTTGTAACCATGATTATTCCAGTTCGTTGCTTCACCTGCGGCAAGGTAACTTCTTTAGGGTTTTACCCGTTAACCAATTTGTCTTAGGGTTTAAATTTTCAATTAAATTTTGGTGGTGAATGTTTTAGGTGATCGGAAATAAATGGGATACCTACCTTGATCTTCTTCAAGCTGATTACACAGAAGGGTAACTTCATTCACTAACTCTCCTTCTCGCTTTGGTCTAATTTGATTACTTAAATCATAATGAACAGCTGCTATATGTATTGATTTTCGAGTATTTTGATGAAAATATGTACGTATTTGAGTGGGTTTTTGTGATTTTGGTTCCAGAACATGGGTAAGAAACTTTAAACTTAAGATCAGGAAGAGTGAAAAACATCAAAACTGAAGAATCTATATGAGTTCCTAGTTTCCTACTCCGTATATGGTATGCATCTTGTCCAGAAACATACCCACTCTCACAAAACAAACAAACAAAAAATCAAGTTTCAAAAATATGCTTAAAAGTTAAATAGAATTTAGGGATGGAAGTTAATCTACGCCATGGAATTTAATTTGAAGTAAAGTATAATCAAGTCAGTACTTCTGCATGCATTTGATCAGCTAATATATCCACTTTGATACATCTTCTTTTTTTCTTGCTTGGTACGGAGTATCAATTTGCTATTAGGGCAGCAACAATAGACCTGGAATTCTTAGGCTCTGTTTGGTAGGACCTAGAATTTTCCCCTTTTCAATCATTTTATGTTGTTTAGTTGGGTAAGTGATGAAAAATAATTTTTCATGACTCCCTTAAAGGTGGAAAACCCTTTTTCATTTGAAAGGGAGGGAAACACATTTCCTTCTTTCCTCCTTACTTCCCTCTCCTTTCTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCTTTTAAGGTACCAAATAAAAGAAAACTAGTTTGGAATTGTATTTTTCCTTGAAAAATATTTTCCATGGAAAATTATTTTACAATGAAAATATTTTACGCCTTACCAAACGGAGCCTTAGTGTAAAATGTAAGAAAACTCATATACATGTGTCCATGGGAAATGTTAATTCTCCTAAATATACATCTCATTTTCTTCACTACCATCTATTACCATTTTAGGAGTGGTATTGGGTGAGAATGAAATTTTATGAAGAAAAACTCAATTTTGGAATAAATTGCATTACCATGGATATTATGATGTTGTTTTTCTTCTCGAATTACACTTAAGTTCATTATTATTACCATTATTTATTACCGGCTACCAAACGAGCCGTCAAAGTCATAGCTTCCGAAGAATAAAGTAAGGGGGGTGGGGTGGTGATGCTTATTGGATTGGGATTGTATTGGTGCTTAAGAATATACCTCTTTAATTCAGTTGTTTGGATAAAACTTGATATTTTTACTTAGTTGGTGAATCACACTAGCATGTGTCTGTGAAACTGAGGCTTAAAGATGTAATTGTAGTTTGTGATATATCATGTACTTAGTTTGTATGAGTGTTCTGTTTTCTTTCAAGAAGGCTTGCATCGTTGGAAGATTCGAAGTGGTTCTCTTTCATTGTTTTTGTCGTAGATATGAGGTTAGACTTAACAGTGGGGGTTCATCTTCTCTAAAACCTTGCATGGATGCTCTGTCTTTTTTTTACGATGACCTGCAATATATTAGGTGTCCAAAGAGGCCGAATTTCTTAGTTATACATTAGGACTGATTATTCAGTACTAATTCCATATAACAGAGATTAAAGGTCCTTCGCTGACATTTAATGCTTCTGCACAGAGATGCCCTTGATGCACTGGGACTGGTCCGCTATTGTTGCAGGAGAATGCTAATGACCCATGTCGACTTGATTGAGAAGCTCTTGAACTACAACAGTAATTTTCTTCCTTCCTTGCTCACTCAGTCATGCTCTCACACTCATGCACTCAAGAATTTTCATACCTGTATGGCTGTAGCTGCTTACATGTGCATCTTAAGTGTTGTTCACAACTTCACACATATAAAATTACAAATGCATCCATGTTGAGTTTTTATTTGTATTCAAGTGTGCTTACCTTTGTAGTCAACTCTTTCTAGTTCACTACCGCCCAATATATTATGTGTGTGCGTGGTACTCTCCAAAGTACTAAACTTGGCCCACCCTTCTCTCTATTCACGGTTAGCCGGGAATGATCATCATGTAAATCTGATCCTGACCTCCAATCGAAAAATGGTTGACTAGGCGTTATTGGTTACATATAACACTAAACAATGCCTCTGTTTTGCTTCAGTTGTACATTTTCACACCTAGTGATCTGTTCTTGCTGTTTTAGTGGGCATATTGTAGAAGAGGTCATAATATGCCGAATCATCTCATTTTTTCGTGTGGTTGTTGGCTGATACTAACATGTTATTCTGATAGACTATCTATGAGAATATAACAGATCGTATATGTTTGCTTAATGTACAACATTGAGTGGTGCAAAGTCCTTTCATGGAATCTTCTCCCTGGTAATTAGTCTAGCTAAGGATATTCTTTCTTTTCCATGTTTCAAGATTACAAAAACTAGACCTGAGCGTATAGACTTTTCTCAGTTTCAGAACAAATATTATTTGATTGCCTGATTTCAGTTAGCTCCATTTGGTTTGGTGAACTTGAGAAGACCAATAATATTTTTTTTATGCTCTTTATGTCGTGTTTTTTTTAGTTGAAAAGAAACTTAATTCTTGTATAATTTCAATTATTCCCTTGTAGGAGTAAGGCTAATGTCTAGGTGGAATGGGCTTAAGATAAATAGCTAATCGATGGACCTAAGACACAAAACCATGTCCCCTAATTTGCTGATGCATACAGGGAAACACCAACTTCTGCCCAATTGAACATAGCCTGGTTTCCTTTCCGTTATAGGGTTCTCCCTTTGTTTCTTTTTACAGTGGCACACTGATCCCTTTTCCCCCTTGGTGTTAATCAATTCGTAATGATCTTAAATGTTTCAATTCTGTTTACAGTATCGGAATTTTATATTTAAGTCATCTTTACTTACCAGCCATCTGACCAGTTTCCATTCCTGTCTCTTGCAGCTCTAGACAAGTCGGATACTAGTTGATGAAGCTTGTGAAACAATGGTAGAAGAATGACCATCTCTTGCCGAATAGTATATTGGGATTTAGGACTGATTTTGGTAGGTTAAAGACATGAAGATTGCTACAGTTCTGGACACAAGTATGAATATTATCTTGAGCAGTAAACATTGTGGTTTGTTGTATTCATGAACCAGTGCCCATCTACTAAATTAATACAGTTCATTGTGCATGTAAAATTGTGATTGTGCTCCATGTTAGTTGTTATAGATGAAGTTTTCCCCTTTGTTTTTGAATAAGTTGATACATTACCAGTTACCACATTAGCCAATGTACAGTTCACCGTGATCCTTTCCCTTGAGAGCTGGATTTGCAAACTGCTGATTTCGCTAACGCCATTAATGGCGTTGGTTTTCTACCGTGTCCTTGTGAACTATATCTCAACAGATTTCACACTGTAAATCTTCATTTTAGTAATTCTCTGGCAACTGATAATTCTATTCCCATTTTTCTTTTTAAAGCAGATAATTCAGAGTATAGAGTGCCCACAGTATTTCTGGTAATGAATTATGTAAAGATTAAACAACAGTAA

mRNA sequence

GTTAGATTTTTTTTATGTTTGTAAAAGAGATACTCCATTAATTGGAAAAATCGGAAACACACCTCTCTTTTCGAAACCTTTTCACCACAGCATCCCTCACTTCCCGGCGCGCGCGGAGTTTTCCCCCACTACGTCGCCGCCGCAATTGATAGTTCTACCGGAAAACCATCTCTTTCTTCTGCCGTGAAGTGTGAAGTACTAGGGAAACCGGAAACAAAGGCCTTGTAACCATGATTATTCCAGTTCGTTGCTTCACCTGCGGCAAGGTGATCGGAAATAAATGGGATACCTACCTTGATCTTCTTCAAGCTGATTACACAGAAGGAGATGCCCTTGATGCACTGGGACTGGTCCGCTATTGTTGCAGGAGAATGCTAATGACCCATGTCGACTTGATTGAGAAGCTCTTGAACTACAACACTCTAGACAAGTCGGATACTAGTTGATGAAGCTTGTGAAACAATGGTAGAAGAATGACCATCTCTTGCCGAATAGTATATTGGGATTTAGGACTGATTTTGGTAGGTTAAAGACATGAAGATTGCTACAGTTCTGGACACAAGTATGAATATTATCTTGAGCAGTAAACATTGTGGTTTGTTGTATTCATGAACCAGTGCCCATCTACTAAATTAATACAGTTCATTGTGCATGTAAAATTGTGATTGTGCTCCATGTTAGTTGTTATAGATGAAGTTTTCCCCTTTGTTTTTGAATAAGTTGATACATTACCAGTTACCACATTAGCCAATGTACAGTTCACCGTGATCCTTTCCCTTGAGAGCTGGATTTGCAAACTGCTGATTTCGCTAACGCCATTAATGGCGTTGGTTTTCTACCGTGTCCTTGTGAACTATATCTCAACAGATTTCACACTGTAAATCTTCATTTTAGTAATTCTCTGGCAACTGATAATTCTATTCCCATTTTTCTTTTTAAAGCAGATAATTCAGAGTATAGAGTGCCCACAGTATTTCTGGTAATGAATTATGTAAAGATTAAACAACAGTAA

Coding sequence (CDS)

ATGATTATTCCAGTTCGTTGCTTCACCTGCGGCAAGGTGATCGGAAATAAATGGGATACCTACCTTGATCTTCTTCAAGCTGATTACACAGAAGGAGATGCCCTTGATGCACTGGGACTGGTCCGCTATTGTTGCAGGAGAATGCTAATGACCCATGTCGACTTGATTGAGAAGCTCTTGAACTACAACACTCTAGACAAGTCGGATACTAGTTGA

Protein sequence

MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo08793.1Spo08793.1mRNA


Homology
[Close]
BLAST of Spo08793.1 vs. NCBI nr
Match: gi|731368671|ref|XP_010696273.1| (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 1.200e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
[Close]
BLAST of Spo08793.1 vs. NCBI nr
Match: gi|568860786|ref|XP_006483895.1| (PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Citrus sinensis])

HSP 1 Score: 151.4 bits (381), Expect = 6.100e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
[Close]
BLAST of Spo08793.1 vs. NCBI nr
Match: gi|976906817|gb|KVH94217.1| (DNA-directed RNA polymerase, subunit N/Rpb10 [Cynara cardunculus var. scolymus])

HSP 1 Score: 151.0 bits (380), Expect = 7.900e-34
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQ+DYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQSDYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSDTS
Sbjct: 61 NYNTLEKSDTS 71
[Close]
BLAST of Spo08793.1 vs. NCBI nr
Match: gi|225425585|ref|XP_002263065.1| (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Vitis vinifera])

HSP 1 Score: 150.6 bits (379), Expect = 1.000e-33
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KS+TS
Sbjct: 61 NYNTLEKSETS 71
[Close]
BLAST of Spo08793.1 vs. NCBI nr
Match: gi|590694753|ref|XP_007044696.1| (RNA polymerases N / 8 kDa subunit [Theobroma cacao])

HSP 1 Score: 150.6 bits (379), Expect = 1.000e-33
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1   MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
           MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 43  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 102

Query: 61  NYNTLDKSDTS 72
           NYNTL+KS+TS
Sbjct: 103 NYNTLEKSETS 113
[Close]
BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RER0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026860 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.500e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
[Close]
BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7Y8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178930 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.500e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
[Close]
BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Match: A0A067GUJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035172mg PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.200e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
[Close]
BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Match: A0A103XNX8_CYNCS (DNA-directed RNA polymerase, subunit N/Rpb10 OS=Cynara cardunculus var. scolymus GN=Ccrd_003720 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.500e-34
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQ+DYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQSDYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSDTS
Sbjct: 61 NYNTLEKSDTS 71
[Close]
BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Match: A0A061GYY6_THECC (RNA polymerases N / 8 kDa subunit OS=Theobroma cacao GN=TCM_042326 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.200e-34
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KS+TS
Sbjct: 61 NYNTLEKSETS 71
[Close]
BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Match: RPBAL_ARATH (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.600e-34
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSD 70
          NYNT++KSD
Sbjct: 61 NYNTMEKSD 69
[Close]
BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.100e-34
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
[Close]
BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Match: NRPBA_ARATH (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.300e-33
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
[Close]
BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.700e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NYNTLDK 68
          NY  L+K
Sbjct: 61 NYAPLEK 67
[Close]
BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.700e-28
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+YTEGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NYNTLDK 68
          NY  L+K
Sbjct: 61 NYAPLEK 67
[Close]
BLAST of Spo08793.1 vs. TAIR (Arabidopsis)
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit)

HSP 1 Score: 144.4 bits (363), Expect = 2.600e-35
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSD 70
          NYNT++KSD
Sbjct: 61 NYNTMEKSD 69
[Close]
BLAST of Spo08793.1 vs. TAIR (Arabidopsis)
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit)

HSP 1 Score: 142.9 bits (359), Expect = 7.600e-35
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
The following BLAST results are available for this feature:
BLAST of Spo08793.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731368671|ref|XP_010696273.1|1.2e-34100.PREDICTED: DNA-directed RNA po... [more]
gi|568860786|ref|XP_006483895.1|6.1e-3498.5PREDICTED: DNA-directed RNA po... [more]
gi|976906817|gb|KVH94217.1|7.9e-3497.1DNA-directed RNA polymerase, s... [more]
gi|225425585|ref|XP_002263065.1|1.0e-3397.1PREDICTED: DNA-directed RNA po... [more]
gi|590694753|ref|XP_007044696.1|1.0e-3397.1RNA polymerases N / 8 kDa subu... [more]
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BLAST of Spo08793.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RER0_SPIOL8.5e-35100.Uncharacterized protein OS=Spi... [more]
A0A0J8B7Y8_BETVU8.5e-35100.Uncharacterized protein OS=Bet... [more]
A0A067GUJ6_CITSI4.2e-3498.5Uncharacterized protein OS=Cit... [more]
A0A103XNX8_CYNCS5.5e-3497.1DNA-directed RNA polymerase, s... [more]
A0A061GYY6_THECC7.2e-3497.1RNA polymerases N / 8 kDa subu... [more]
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BLAST of Spo08793.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPBAL_ARATH4.6e-3492.7DNA-directed RNA polymerase su... [more]
RPAB5_BRANA6.1e-3492.9DNA-directed RNA polymerases I... [more]
NRPBA_ARATH1.3e-3392.9DNA-directed RNA polymerases I... [more]
RPAB5_BOVIN1.7e-2882.0DNA-directed RNA polymerases I... [more]
RPAB5_CHILA1.7e-2882.0DNA-directed RNA polymerases I... [more]
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BLAST of Spo08793.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G61700.12.6e-3592.7RNA polymerases N / 8 kDa subu... [more]
AT1G11475.17.6e-3592.9RNA polymerases N / 8 kDa subu... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PRODOMPD006539coord: 9..63
score: 6.0
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRPIRSF005653RpoN_RPB10coord: 1..71
score: 5.6
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
score: 9.0
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 1..68
score: 8.7
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
scor
IPR023580RNA polymerase subunit RPB10unknownSSF46924RNA polymerase subunit RPB10coord: 1..63
score: 2.62
NoneNo IPR availablePANTHERPTHR23431FAMILY NOT NAMEDcoord: 2..71
score: 1.4
NoneNo IPR availablePANTHERPTHR23431:SF2DNA-DIRECTED RNA POLYMERASES II, IV AND V SUBUNIT 10coord: 2..71
score: 1.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0009845 seed germination
biological_process GO:0006979 response to oxidative stress
biological_process GO:0010167 response to nitrate
biological_process GO:0009408 response to heat
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015706 nitrate transport
biological_process GO:0006826 iron ion transport
biological_process GO:0010106 cellular response to iron ion starvation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0016174 NAD(P)H oxidase activity
molecular_function GO:0004601 peroxidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo180520.67Barchart | Table
Spo244530.66Barchart | Table
Spo063430.65Barchart | Table