Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCCAACTAACTAACTAGGATGACTGGATGAGTAGGTCATAAAAGGAGGAATATCCATAGAGGGTGGCATAAAGCAACAAAATAATTTTGTCATACAATACAGTACGTACGCCAATGATAATGATGAATTATCATTTTGATTTTTGACCCATCCATCTAATCATGTAATAACATGGACAAAGGAATCTCCACCTTTCCGGTTGTTTCACCCTTCAATTCATTGCTCTTTCTCATTTTAGTATTTATAAATGCACGTTTTTTAACTATATATATATATATATATATAAAAGTGATTTGCACCTCTGATAATTTGTTAACNGCTCTTTCTCATTTTAGTATTTATAAATGCACGTTTTTTAACTATATATATATATATATATATATATAAAAGTGATTTGCACCTCTGATAATTTGTTAACACTATACTCCATATCATCATGGGTAAAATAGCCCTAGGAACAACCCGAGAGGCAACGGAACCAGAATGCATCAATGCTCTCGTTGTCGAATTCATTTGCACCTTCCTCTTCGTCTTCGCCGGTGTTGGATCTGCCATGGCTGCTGGTAATTAACCACTCGATCAAATTTAACAATTTATATACTATGTCGTATTCCTATTATTAAGAATGATCGATTTAATTTTGTTTGTAATTGTAAAATGTTACAGATAAAGCAGAAGCAAGTCCAATAGTAGGATTGTTGTTTGTGGGGATAACACATGCATTTGTGGTAGCTGCGATGATTGCTGCCGGATTTAACATTTCCGGCGGTCACTTGAACCCCGCCGTCACTCTTGGTCTTGCAATTGGTGGCAATATTACAATTCTCAGATCTCTACTTTATTGGATTATACAATGTCTTGCTTCTGCTCTGGCTTGTTACTTGCTCACCTATGTCACCAGTGGACTGGTAAAATTTTATTTTTTACCTCATTTACTATTCCGAGATATATTATTCCTTGTCTACATTAAAATAAGATTAAATTATTTTTTACCATCAAATAAATTGATAAATTGTTTTTTACCGCCTAAAAAAATAAAAAGAGTCTTACCACCTAAATATAAAATAAAAATTATTTTTTACCACCTCTTAACCGGAAAAATTGAAAGAAATGTTATGCGGATCCATTTCAACGACTATATTTTTCATTTTCTTATATTCTCCCATGATTTTCATGTATGTAAGCTACTATTTTCCTTTACTTTCCATTAATTCACATACCATTTTTGTCCATCTTGTAGTTAAGAGGTGGTAAAAAATAATTTTATTTTATTTTTAGGTAGTAAAAGACAATTTTTATTTTTTTAGGTCATAAAAACAATTTATCAAATTTTTTAAGTGATAAAAAACAATTTAACCTTAAACTAATTAGTCACTCCGTCTAAATTTAGTGCGTTCTATTTACCTAATTAAGTGATTATCACTTATCTGAACGCAGGTGACTCCTATACACTCTCTTCCAAAGGGGGTAGACCCTCTACAAGGATTGGTGATGGAGGTGATCTTAACATTTTCTCTCCTCTTCACAATATACACCACCCTTGTTGACCAAAAGAAGGGCCCACTTCAAAGCCAAGGAATATTGCTAACTGGGCTTGTGGTTGGGGCCAACATCTTTGCTGGTGGGTTATTCTCTGGGGCATCAATGAATCCAGCAAGGTCATTTGGGCCTGCTCTTGTAAGCTGGAACTGGGCTGATCACTGGGTTTACTGGGTTGGCCCACTCATTGGTGGGGCTCTTGGTGGGCTCATTTGTGACAACTTCTTCATTCTCAAAACCCATGTTCCTCTTTCAAGAGATGATGAAGCTTTCTAATATCATAAATAATTTCCAAAATAAATGTTATCATTAGTTGTGCTTATGCAATTTGTGCAAATTGCTTGATGTAACTTTGTCATTAAGTGAAGATTTAAATTGGATATTGGACTTTTAAAGACATTATATTAAATTATGCTTTTATAAAATGGTACCACTTTTTATTAGGAATTGAATCTTTCTATGGTACCACTTTTGATAATTTTATATGGTTGAAGGTTGAACAAAGATCCCCAC AACCCAACTAACTAACTAGGATGACTGGATGAGTAGGTCATAAAAGGAGGAATATCCATAGAGGGTGGCATAAAGCAACAAAATAATTTTGTCATACAATACAGTACGTACGCCAATGATAATGATGAATTATCATTTTGATTTTTGACCCATCCATCTAATCATGTAATAACATGGACAAAGGAATCTCCACCTTTCCGGTTGTTTCACCCTTCAATTCATTGCTCTTTCTCATTTTAGTATTTATAAATGCACGTTTTTTAACTATATATATATATATATATATAAAAGTGATTTGCACCTCTGATAATTTGTTAACNGCTCTTTCTCATTTTAGTATTTATAAATGCACGTTTTTTAACTATATATATATATATATATATATATAAAAGTGATTTGCACCTCTGATAATTTGTTAACACTATACTCCATATCATCATGGGTAAAATAGCCCTAGGAACAACCCGAGAGGCAACGGAACCAGAATGCATCAATGCTCTCGTTGTCGAATTCATTTGCACCTTCCTCTTCGTCTTCGCCGGTGTTGGATCTGCCATGGCTGCTGATAAAGCAGAAGCAAGTCCAATAGTAGGATTGTTGTTTGTGGGGATAACACATGCATTTGTGGTAGCTGCGATGATTGCTGCCGGATTTAACATTTCCGGCGGTCACTTGAACCCCGCCGTCACTCTTGGTCTTGCAATTGGTGGCAATATTACAATTCTCAGATCTCTACTTTATTGGATTATACAATGTCTTGCTTCTGCTCTGGCTTGTTACTTGCTCACCTATGTCACCAGTGGACTGGTGACTCCTATACACTCTCTTCCAAAGGGGGTAGACCCTCTACAAGGATTGGTGATGGAGGTGATCTTAACATTTTCTCTCCTCTTCACAATATACACCACCCTTGTTGACCAAAAGAAGGGCCCACTTCAAAGCCAAGGAATATTGCTAACTGGGCTTGTGGTTGGGGCCAACATCTTTGCTGGTGGGTTATTCTCTGGGGCATCAATGAATCCAGCAAGGTCATTTGGGCCTGCTCTTGTAAGCTGGAACTGGGCTGATCACTGGGTTTACTGGGTTGGCCCACTCATTGGTGGGGCTCTTGGTGGGCTCATTTGTGACAACTTCTTCATTCTCAAAACCCATGTTCCTCTTTCAAGAGATGATGAAGCTTTCTAATATCATAAATAATTTCCAAAATAAATGTTATCATTAGTTGTGCTTATGCAATTTGTGCAAATTGCTTGATGTAACTTTGTCATTAAGTGAAGATTTAAATTGGATATTGGACTTTTAAAGACATTATATTAAATTATGCTTTTATAAAATGGTACCACTTTTTATTAGGAATTGAATCTTTCTATGGTACCACTTTTGATAATTTTATATGGTTGAAGGTTGAACAAAGATCCCCAC ATGGGTAAAATAGCCCTAGGAACAACCCGAGAGGCAACGGAACCAGAATGCATCAATGCTCTCGTTGTCGAATTCATTTGCACCTTCCTCTTCGTCTTCGCCGGTGTTGGATCTGCCATGGCTGCTGATAAAGCAGAAGCAAGTCCAATAGTAGGATTGTTGTTTGTGGGGATAACACATGCATTTGTGGTAGCTGCGATGATTGCTGCCGGATTTAACATTTCCGGCGGTCACTTGAACCCCGCCGTCACTCTTGGTCTTGCAATTGGTGGCAATATTACAATTCTCAGATCTCTACTTTATTGGATTATACAATGTCTTGCTTCTGCTCTGGCTTGTTACTTGCTCACCTATGTCACCAGTGGACTGGTGACTCCTATACACTCTCTTCCAAAGGGGGTAGACCCTCTACAAGGATTGGTGATGGAGGTGATCTTAACATTTTCTCTCCTCTTCACAATATACACCACCCTTGTTGACCAAAAGAAGGGCCCACTTCAAAGCCAAGGAATATTGCTAACTGGGCTTGTGGTTGGGGCCAACATCTTTGCTGGTGGGTTATTCTCTGGGGCATCAATGAATCCAGCAAGGTCATTTGGGCCTGCTCTTGTAAGCTGGAACTGGGCTGATCACTGGGTTTACTGGGTTGGCCCACTCATTGGTGGGGCTCTTGGTGGGCTCATTTGTGACAACTTCTTCATTCTCAAAACCCATGTTCCTCTTTCAAGAGATGATGAAGCTTTCTAA MGKIALGTTREATEPECINALVVEFICTFLFVFAGVGSAMAADKAEASPIVGLLFVGITHAFVVAAMIAAGFNISGGHLNPAVTLGLAIGGNITILRSLLYWIIQCLASALACYLLTYVTSGLVTPIHSLPKGVDPLQGLVMEVILTFSLLFTIYTTLVDQKKGPLQSQGILLTGLVVGANIFAGGLFSGASMNPARSFGPALVSWNWADHWVYWVGPLIGGALGGLICDNFFILKTHVPLSRDDEAF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25629.1 vs. NCBI nr
Match: gi|902215423|gb|KNA17477.1| (hypothetical protein SOVF_079550 [Spinacia oleracea]) HSP 1 Score: 487.3 bits (1253), Expect = 1.600e-134 Identity = 246/248 (99.19%), Postives = 246/248 (99.19%), Query Frame = 1
BLAST of Spo25629.1 vs. NCBI nr
Match: gi|731317245|ref|XP_010668288.1| (PREDICTED: aquaporin TIP4-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 434.1 bits (1115), Expect = 1.600e-118 Identity = 213/246 (86.59%), Postives = 229/246 (93.09%), Query Frame = 1
BLAST of Spo25629.1 vs. NCBI nr
Match: gi|1015601371|gb|AMW03269.1| (aquaporin TIP [Tamarix hispida]) HSP 1 Score: 375.2 bits (962), Expect = 9.000e-101 Identity = 178/248 (71.77%), Postives = 209/248 (84.27%), Query Frame = 1
BLAST of Spo25629.1 vs. NCBI nr
Match: gi|257480319|gb|ACV60358.1| (putative tonoplast intrinsic protein [Camellia sinensis]) HSP 1 Score: 354.0 bits (907), Expect = 2.200e-94 Identity = 177/248 (71.37%), Postives = 202/248 (81.45%), Query Frame = 1
BLAST of Spo25629.1 vs. NCBI nr
Match: gi|697118100|ref|XP_009612974.1| (PREDICTED: aquaporin TIP4-1 [Nicotiana tomentosiformis]) HSP 1 Score: 351.7 bits (901), Expect = 1.100e-93 Identity = 173/245 (70.61%), Postives = 200/245 (81.63%), Query Frame = 1
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF35_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079550 PE=3 SV=1) HSP 1 Score: 487.3 bits (1253), Expect = 1.100e-134 Identity = 246/248 (99.19%), Postives = 246/248 (99.19%), Query Frame = 1
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1L2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g032220 PE=3 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.100e-118 Identity = 213/246 (86.59%), Postives = 229/246 (93.09%), Query Frame = 1
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Match: A0A145PR92_9CARY (Aquaporin TIP OS=Tamarix hispida GN=TIP3 PE=2 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 6.300e-101 Identity = 178/248 (71.77%), Postives = 209/248 (84.27%), Query Frame = 1
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Match: D3GDK8_CAMSI (Putative tonoplast intrinsic protein OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 1.500e-94 Identity = 177/248 (71.37%), Postives = 202/248 (81.45%), Query Frame = 1
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Match: Q9XG70_TOBAC (Aquaglyceroporin (Tonoplast intrinsic protein (Tipa)) OS=Nicotiana tabacum GN=TIPa PE=2 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 7.400e-94 Identity = 173/245 (70.61%), Postives = 200/245 (81.63%), Query Frame = 1
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 4.800e-86 Identity = 160/246 (65.04%), Postives = 191/246 (77.64%), Query Frame = 1
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 6.300e-70 Identity = 145/255 (56.86%), Postives = 177/255 (69.41%), Query Frame = 1
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 1.800e-69 Identity = 142/252 (56.35%), Postives = 177/252 (70.24%), Query Frame = 1
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 7.200e-66 Identity = 130/249 (52.21%), Postives = 168/249 (67.47%), Query Frame = 1
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.600e-65 Identity = 129/242 (53.31%), Postives = 173/242 (71.49%), Query Frame = 1
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Match: AT2G25810.1 (tonoplast intrinsic protein 4;1) HSP 1 Score: 318.9 bits (816), Expect = 2.700e-87 Identity = 160/246 (65.04%), Postives = 191/246 (77.64%), Query Frame = 1
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Match: AT2G36830.1 (gamma tonoplast intrinsic protein) HSP 1 Score: 247.3 bits (630), Expect = 1.000e-65 Identity = 124/245 (50.61%), Postives = 158/245 (64.49%), Query Frame = 1
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Match: AT3G16240.1 (delta tonoplast integral protein) HSP 1 Score: 245.7 bits (626), Expect = 2.900e-65 Identity = 126/249 (50.60%), Postives = 166/249 (66.67%), Query Frame = 1
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Match: AT4G01470.1 (tonoplast intrinsic protein 1;3) HSP 1 Score: 240.0 bits (611), Expect = 1.600e-63 Identity = 124/250 (49.60%), Postives = 160/250 (64.00%), Query Frame = 1
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Match: AT4G17340.1 (tonoplast intrinsic protein 2;2) HSP 1 Score: 236.9 bits (603), Expect = 1.400e-62 Identity = 120/237 (50.63%), Postives = 162/237 (68.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25629.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25629.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25629.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25629.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|