Spo07664 (gene) | SpinachBase

Overview


Name	Spo07664
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Similarity to RNA binding protein
Location	chr1 : 33180862 .. 33184607 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTTTCTACCTTCTTCCTCACCCGTCGTGTTCTTGGAACAAAACCTTCGTCGTTGGCAAACCACTGTGAGCTCTCTTCTGTATATTTTCAACTTTTCTCTGTTCCTTATCCGACCATTGATTTAATAACTTTAATTGATAAAAAATGAATCTTAATTGCTGTGCTCTTCAAACTCTATATTAACCCAAGTTTTTTTGAAATTTTAACAAAACCCATGTTTAATTTAACTATTCTGAGCCCTAATTAACTGTTATTGGCTGTGATGGATTTTGTTTGATTTAGTTTGCCAATTTTTGCATGTTTTTGGGATGGGTTTAATCAGGACTTTTTGAGTACGAGAGGATGAGAATAGGGGCGAGTTTCCGATGCTTTACGGCGTTGAAGTCTCAGTTCTCAACCGTTAGATTCAGCTCAGAGATCTTTGTAAGCAGTAAGATACATAGAATTTACTACCTGAATTGAGATTATTATTGATATTATGTTTTATTTATTTTGGATAATTGATGCAGGACTCTCATTTTACACAAAACATGAGGAATTTAGGAGCATGTTTTCTCAATTCGGCAATGTTAAAGAAGGTAGATTGTAGCATTTCTGGTGGTCATCTTTTTCTTCTGTTAGGACTATTGTTTGGGTCATTATTCAATTTTGGAAGTTTGAGCGACTTAATTGTGGTTTATACAAATGGGGTTTAATTGTGTATTCTGCAGCCAGGTTGATAATGGATAGTAGGACAGGAAGAACAAAGGGGTTTGGTTTTGTTACATTTGAGACGGAAGATGAGGCACATGAAGCTATTAAGAGTATGGATTGCAAGGTACTTTTCTCCTTCATTCTGATGATTTCACCCTTCTTGCTAGTGAGTAGTGATTTTGTTTGTTTGTAATTTGCATGTATGTTTTTGTGTGTACTCCCCCTTGCAGAGAGGGTGGGTGGGTTGGGGGGCAGCGGTGTGGATGCTCATAAGCATAATCTGCTGCGGAACTAAGTGGAGAAAGTAAAGGGTCTAATTTAGCATTTACTGCTCAGCTTTACATTTATGCAATTCCCAGGGTTAATTGTTTAATTTCAGTATGCAGATTGTTCATTGTGCATCTTCATGTGACCTGAGTATTTTACAGTCACCATGTTTGGGATTTAACAGGGATAAGATAGAGAGGGAGAAATAGGTATTGAGAAATGATGTTATATTTCTAGCTCAATTCAAATGCTTGCATGTTTTGGTTTGCAGTTTGGGTTTGCTTTGAAGCGTTTGAACTGCAAACTATTATTAAGTGCTGCGTATATTCAAAATTCCATCCCTATAAAATAACTATTCCCATTCCATTTGATTGCATCAACAATCTGGTGGTGTACAGTTTGTTTTGGGAAACTTGCCTGGAGTTAGGGCTTGCCTTTTATGGGGTTATAATTCAGGTTTAGCGGCAAACTGCAAACTAAGGTGAAACAGCACCATTGCGTTGATGAGCAGCATATTTCCCAGGGTTTCAAATAATGACAAGCTATTCAAATTCCTAAAAAAAAAAAATGTATGCTTGTAAGTAATATTCATGAGTTAAGCCTTTATATATTGTCGTCTAAAATTGGTGTTTTGGACATTTTGAAATTTTGATAACATGGAACCTTTGAATTGGCAGCTTGATTCTTTTGGAGGTGTTACTTCCTTTTATGTGGGTTTCTAAATGTTGAAACATAGTGGAGTATGTTTCCGTGCTTCGTAGAAGAGAAGTGAAAACCCAGGCTGTGCATCTTTATTAGGTCTCAGGATCTGAATAGTGGGTTTACCGACCTTTCCAGGTTTCCCTCCCGATCTGAATACTCTTTTAATGGAAATGGAGGTATCATACAGAAGGGCCCTTAGGAGAAGAGTGATCTGCTAAGGATCTGTATTAGGGGAAGGGCACTTTAGCGAGTAGCATTACTTTTCAGTCATTAGATAGCTAGTTAGTTACAGGACGAACTCTATAAATAGAGGAGAGGAGAGGAGGGAGAGAGAAAGGATGCTGAAGTCTCAAGCACGATTTCTTCAAACCTCTAGAATGGATGCTCTTTTGTTGGTTGTTTTACATTTTGGGAGATAACAAGCCTCTAGAGTCTAGAATGCTTGTAAGTTGTACGTAGTAACTAACTAACTAACTATCCTCTATTATTGCTGTTTTCGAGTTATTAATCAATCAAACTTCATATTCTTTCTTTAATCCTCACATTTCACCTCTTACATCTGTCCAAAGCTTAGCTGATTCATAGCATGATCTAGGAAGATTACTATCTGCTTTTTACAGTTGGTGTACATAAGCTACAGATGCCCTGGTTGGTTAGAGTTTCCACGGATTGTTATATTGCTGGACAATGTACTAAACGCCTGGGTTGAGTAAAAAAGCTGGAAATGGAGAGAAAATGTTATTATTAGAGATATTTGGATGCAGTCATGCAGCTTCTCATATCAAATTATTCCCTAGGCTTTATCTCTTGCTGTTTGGACAGAGGATATGTTGTGTTCTTGTCTTGTGTAAGACTTTTGGGATGGAAATACCTGTCATCGGAGCTTTAAGAGGGGAGGATGTTATTTTTTTGGAAGAAGAGTTATAGATATGCTGAAGGTCCCTTCTCCAACGTGAGTTCTCTTTGTTGGGTAATGACTAATGACTGCTACCTTCTAAGATCTAATTAGTCAAAGGTATATGGAATGAGGTGTTTGCCTTTTAGAATTTGTAGAGAAAATGTTAAGTTAAATACAAAGGTGCACACTGTCCGAAATTGGTGTAAGAAAATTGTATGATTATGCGTTCATATGTGAGGCCCATAAGGTCATAACCATCTGGACTCATCAAGAGATTTTACATAGAAGCTTTGATGGCTACTTACATATACTACTTACAGTAACTTGAAAATGATGCCTAGTTACTAAAAACACAAATTTTTTAGCAGTTTTTCTCGTACAAATTTGTGGTTTGTGGTTACATTTGTAAAGAGCTGTAAGTATGATCGAGCCACTAACGACACACTGGTAAAGGATATTTGTTCAACTAATTGGGTAACTGCTTATTCATGTTTCTTCTCGGCTCATGTTTCTTCTCTCATTAACTTACCAAGCTGCAAAGTTCTCCTGTTTTTGCATTTGAAGCTGCTTCTTTTCAATGCAGATAGTCCAAGGACGACTGATTTCTGTGGAACCTGCCACGACAAAAAAGGCTGATGGAGATGGTGTCGACTCCCATAGCTGAAAGTTCTCGGTTTTGAACTCAACTCCATATTAGGCATGCTGCGTATCGTCTGATGAACTACCCCATCAACAGTGAAGTATGATAGGAATCCCTGTATAAGGAAGTGCTGCTACAAATACAAAATTCGTTCTGAACTTTCACTGTTCATATCTCATTGTTTAAACATAGGCATGCCATCAAGTCTCGTGACTCACTTAACAATTAACACTAGCACTTGTGGATAATGTAAGCTATACTGCACTATTTTTTGTTGCTTGTAATAACTTTATTAATCCCCTCTTCGAATTATTAAACCAAATGTCTCCGGTAAAGAAAGTTAAGGAGACAATCCAGGTATGCTACTTGTAACCATAAAGGGTGTTTACGTGTTCGAACCAAAATCATATAAGAAGTACGGAGGAACATTTGGTTAGAAACGTTCCAAAAATCATTGTAAAATGTAGTAAATAAGCTACAAGTTATTCTCTACCTTGATACAATGAAGTGCATCTTTTCCATGCATCATTTTATAGATGAACC

mRNA sequence

TTCATTTTCTACCTTCTTCCTCACCCGTCGTGTTCTTGGAACAAAACCTTCGTCGTTGGCAAACCACTGACTTTTTGAGTACGAGAGGATGAGAATAGGGGCGAGTTTCCGATGCTTTACGGCGTTGAAGTCTCAGTTCTCAACCGTTAGATTCAGCTCAGAGATCTTTGTAAGCAGACTCTCATTTTACACAAAACATGAGGAATTTAGGAGCATGTTTTCTCAATTCGGCAATGTTAAAGAAGCCAGGTTGATAATGGATAGTAGGACAGGAAGAACAAAGGGGTTTGGTTTTGTTACATTTGAGACGGAAGATGAGGCACATGAAGCTATTAAGAGTATGGATTGCAAGATAGTCCAAGGACGACTGATTTCTGTGGAACCTGCCACGACAAAAAAGGCTGATGGAGATGGTGTCGACTCCCATAGCTGAAAGTTCTCGGTTTTGAACTCAACTCCATATTAGGCATGCTGCGTATCGTCTGATGAACTACCCCATCAACAGTGAAGTATGATAGGAATCCCTGTATAAGGAAGTGCTGCTACAAATACAAAATTCGTTCTGAACTTTCACTGTTCATATCTCATTGTTTAAACATAGGCATGCCATCAAGTCTCGTGACTCACTTAACAATTAACACTAGCACTTGTGGATAATGTAAGCTATACTGCACTATTTTTTGTTGCTTGTAATAACTTTATTAATCCCCTCTTCGAATTATTAAACCAAATGTCTCCGGTAAAGAAAGTTAAGGAGACAATCCAGGTATGCTACTTGTAACCATAAAGGGTGTTTACGTGTTCGAACCAAAATCATATAAGAAGTACGGAGGAACATTTGGTTAGAAACGTTCCAAAAATCATTGTAAAATGTAGTAAATAAGCTACAAGTTATTCTCTACCTTGATACAATGAAGTGCATCTTTTCCATGCATCATTTTATAGATGAACC

Coding sequence (CDS)

ATGAGAATAGGGGCGAGTTTCCGATGCTTTACGGCGTTGAAGTCTCAGTTCTCAACCGTTAGATTCAGCTCAGAGATCTTTGTAAGCAGACTCTCATTTTACACAAAACATGAGGAATTTAGGAGCATGTTTTCTCAATTCGGCAATGTTAAAGAAGCCAGGTTGATAATGGATAGTAGGACAGGAAGAACAAAGGGGTTTGGTTTTGTTACATTTGAGACGGAAGATGAGGCACATGAAGCTATTAAGAGTATGGATTGCAAGATAGTCCAAGGACGACTGATTTCTGTGGAACCTGCCACGACAAAAAAGGCTGATGGAGATGGTGTCGACTCCCATAGCTGA

Protein sequence

MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07664.1	Spo07664.1	mRNA

Homology

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BLAST of Spo07664.1 vs. NCBI nr
Match: gi|902231768|gb|KNA22398.1| (hypothetical protein SOVF_034450 [Spinacia oleracea])

HSP 1 Score: 225.3 bits (573), Expect = 5.300e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60
           MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR
Sbjct: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60

Query: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS 115
           TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS
Sbjct: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS 114

[Close]

BLAST of Spo07664.1 vs. NCBI nr
Match: gi|731317940|ref|XP_010669455.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 150.2 bits (378), Expect = 2.200e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60
           MRI A F+C T LK +F TVR+S+E+FVSRLSFYTK +EF+ MFSQFGNVKEARLIMDS+
Sbjct: 2   MRISARFQCLTVLKPRFLTVRYSTELFVSRLSFYTKRDEFKKMFSQFGNVKEARLIMDSK 61

Query: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKAD 107
           TGRTKG+GFVTFETE EA  AIK    KIV+GRLI VEP+T  K D
Sbjct: 62  TGRTKGYGFVTFETEAEAQNAIKVFHGKIVRGRLIFVEPSTNIKTD 107

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BLAST of Spo07664.1 vs. NCBI nr
Match: gi|672175380|ref|XP_008807741.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 106.7 bits (265), Expect = 2.800e-20
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1


		  
Query: 22  FSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEA 81
           FSSEIFVSRLS+YT  EEFR  F  FG+VKEARLI D+RT RTKG+GFVT+E+E EA +A
Sbjct: 25  FSSEIFVSRLSYYTTDEEFREAFLPFGSVKEARLIRDARTKRTKGYGFVTYESEAEAQKA 84

Query: 82  IKSMDCKIVQGRLISVEPATTKKAD 107
           IK+MD +I  GRLI VE A ++  +
Sbjct: 85  IKAMDGRIFGGRLIFVETAKSRSKE 109

[Close]

BLAST of Spo07664.1 vs. NCBI nr
Match: gi|992278318|gb|KXG36665.1| (hypothetical protein SORBI_002G371500 [Sorghum bicolor])

HSP 1 Score: 106.3 bits (264), Expect = 3.600e-20
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1


		  
Query: 11  TALKSQFSTVR-FSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGF 70
           T L SQ  ++R FS+EIFVSRLSFYT  EEF+ +FS FG V+EARL+ D +TGR KGFGF
Sbjct: 9   TGLTSQVLSMRCFSTEIFVSRLSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGF 68

Query: 71  VTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKA 106
           V + ++ EA +A+K+MD +I++GRLI VE A  +K+
Sbjct: 69  VKYSSQAEAEKAVKAMDGRILRGRLIFVEMAKEQKS 104

[Close]

BLAST of Spo07664.1 vs. NCBI nr
Match: gi|514813405|ref|XP_004981486.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Setaria italica])

HSP 1 Score: 104.0 bits (258), Expect = 1.800e-19
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1


		  
Query: 13  LKSQFSTVR-FSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVT 72
           L SQ   +R FS+EIFVSRLSFYT  EE + +FS FGNVKEARL+ DS+TGR KGFGFV 
Sbjct: 11  LSSQVLGMRCFSTEIFVSRLSFYTTEEELKDVFSPFGNVKEARLMRDSQTGRLKGFGFVN 70

Query: 73  FETEDEAHEAIKSMDCKIVQGRLISVEPATTKKA 106
           + ++ EA +A+K+M  +I++GRLI VE A  +K+
Sbjct: 71  YSSQAEAEKAVKAMHGRILRGRLIFVEMAQGRKS 104

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BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSF8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034450 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.700e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60
           MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR
Sbjct: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60

Query: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS 115
           TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS
Sbjct: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS 114

[Close]

BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D0S7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034900 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.500e-33
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSR 60
           MRI A F+C T LK +F TVR+S+E+FVSRLSFYTK +EF+ MFSQFGNVKEARLIMDS+
Sbjct: 2   MRISARFQCLTVLKPRFLTVRYSTELFVSRLSFYTKRDEFKKMFSQFGNVKEARLIMDSK 61

Query: 61  TGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKAD 107
           TGRTKG+GFVTFETE EA  AIK    KIV+GRLI VEP+T  K D
Sbjct: 62  TGRTKGYGFVTFETEAEAQNAIKVFHGKIVRGRLIFVEPSTNIKTD 107

[Close]

BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Match: K4AH03_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_038160mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.200e-19
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1


		  
Query: 13  LKSQFSTVR-FSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVT 72
           L SQ   +R FS+EIFVSRLSFYT  EE + +FS FGNVKEARL+ DS+TGR KGFGFV 
Sbjct: 11  LSSQVLGMRCFSTEIFVSRLSFYTTEEELKDVFSPFGNVKEARLMRDSQTGRLKGFGFVN 70

Query: 73  FETEDEAHEAIKSMDCKIVQGRLISVEPATTKKA 106
           + ++ EA +A+K+M  +I++GRLI VE A  +K+
Sbjct: 71  YSSQAEAEKAVKAMHGRILRGRLIFVEMAQGRKS 104

[Close]

BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Match: A0A0A9V281_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.800e-19
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1


		  
Query: 22  FSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEA 81
           FS++IFVSRLSFYT  EE +++FS FG V+EARL+ D++TGR KGFGFV + ++ EA +A
Sbjct: 13  FSTQIFVSRLSFYTTEEELKNVFSPFGTVEEARLMRDNQTGRMKGFGFVKYSSQAEADKA 72

Query: 82  IKSMDCKIVQGRLISVEPATTKKAD 107
           IK+MD +I++GRLISVE A   K+D
Sbjct: 73  IKAMDGRILRGRLISVELAKGHKSD 97

[Close]

BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Match: A0A078F876_BRANA (BnaA02g06700D protein OS=Brassica napus GN=BnaA02g06700D PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.600e-19
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1


		  
Query: 21  RFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHE 80
           RF++++FVSRLS YT  +  R +FS FG +KEARLI DS+T R KGFGFVTFE+ED+A +
Sbjct: 4   RFTTQLFVSRLSGYTTDQSLRQLFSPFGQIKEARLIKDSQTQRPKGFGFVTFESEDDAQK 63

Query: 81  AIKSMDCKIVQGRLISVEPATTKKADGDGVDSHS 115
           A+K++D KIV GRLI VE A   +A    +D ++
Sbjct: 64  AMKALDGKIVDGRLIFVEAAKDVEAPTTKLDENT 97

[Close]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.300e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRF-SSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDS 60
           +R G S      + S   ++R+ SS++FV  LS+ T     +  F+ FG V EA +I D 
Sbjct: 11  LRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADR 70

Query: 61  RTGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKA 106
            TGR++GFGFV+F  ED A+ AIK MD K + GR I V  AT + +
Sbjct: 71  ETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116

[Close]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Match: MRD1_CANAL (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.600e-13
Identity = 33/82 (40.24%), Postives = 57/82 (69.51%), Query Frame = 1


		  
Query: 23  SSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAI 82
           +  +F+  +S+    E+FRS+FSQ+G ++E  + +D+RTG++KGF +V F  +++A  A 
Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368

Query: 83  KSMDCKIVQGRLISVEPATTKK 105
           +S+D +I QGRL+ + PA  KK
Sbjct: 369 RSLDKQIFQGRLLHILPADKKK 390

[Close]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Match: MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mrd1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-12
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1


		  
Query: 15  SQFSTVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFET 74
           +    +R S+ +FV  LS+ TK  E   +FS FG ++E  +  D+R   +KGF +V +  
Sbjct: 286 TNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYAD 345

Query: 75  EDEAHEAIKSMDCKIVQGRLISVEPATTKK 105
            D A EA +++D KI QGRL+ + PA+ KK
Sbjct: 346 PDAAVEAYRNLDGKIFQGRLLHILPASQKK 375

[Close]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.100e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1


		  
Query: 19  TVRFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEA 78
           ++R +  +F+  L +  K E+FR +FSQ+G ++E  L ++++TG+ KGF  V FE  + A
Sbjct: 296 SIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENA 355

Query: 79  HEAIKSMDCKIVQGRLISVEPATTKKADGDGVDSH 114
             A ++ D KI QGRL+ + P   KK D + +D H
Sbjct: 356 IAAYEAQDGKIFQGRLLHILPGKPKK-DYNRLDEH 389

[Close]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-11
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 1


		  
Query: 27  FVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAIKSMD 86
           FV  L++ T  E+ +  FSQFG+V ++++I D  +GR++GFGFVTF+ E    +AI+ M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 87  CKIVQGRLISVEPATTKKADGDG 110
            K + GR+I+V  A ++ + G G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGG 91

[Close]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 101.7 bits (252), Expect = 3.100e-22
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1


		  
Query: 21  RFSSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHE 80
           R S+++FVSRLS YT  +  R +FS FG +KEARLI DS T R KGFGF+TF++ED+A +
Sbjct: 4   RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63

Query: 81  AIKSMDCKIVQGRLISVEPATTKKADGDGVDSH 114
           A+KS+D KIV GRLI VE A   +    G++S+
Sbjct: 64  ALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSN 96

[Close]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-14
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1


		  
Query: 1   MRIGASFRCFTALKSQFSTVRF-SSEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDS 60
           +R G S      + S   ++R+ SS++FV  LS+ T     +  F+ FG V EA +I D 
Sbjct: 11  LRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADR 70

Query: 61  RTGRTKGFGFVTFETEDEAHEAIKSMDCKIVQGRLISVEPATTKKA 106
            TGR++GFGFV+F  ED A+ AIK MD K + GR I V  AT + +
Sbjct: 71  ETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116

[Close]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.600e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1


		  
Query: 24  SEIFVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAIK 83
           ++++VS LSF T  +  R  F QFGN+    ++MD    R KGF F+ +ETE+EA +AI+
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 84  SMDCKIVQGRLISVEPATTK 104
            M  K + GR+I VE A T+
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.500e-13
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1


		  
Query: 29  SRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAIKSMDCK 88
           S LS YT  +  R +F+ F     ARLI D +T R KGFGF+TFE+ED+A +A+K+++ K
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 89  IVQGRLISVEPATTKKADGDGVDSH 114
           IV GRLI VE A   +A    + S+
Sbjct: 136 IVNGRLIFVETAKEVEAPTTSLKSN 155

[Close]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-12
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 1


		  
Query: 27  FVSRLSFYTKHEEFRSMFSQFGNVKEARLIMDSRTGRTKGFGFVTFETEDEAHEAIKSMD 86
           FV  L++ T  E+ +  FSQFG+V ++++I D  +GR++GFGFVTF+ E    +AI+ M+
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 87  CKIVQGRLISVEPATTKKADGDG 110
            K + GR+I+V  A ++ + G G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGG 91

The following BLAST results are available for this feature:

BLAST of Spo07664.1 vs. NCBI nr
BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
BLAST of Spo07664.1 vs. TAIR (Arabidopsis)

BLAST of Spo07664.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231768\|gb\|KNA22398.1\|	5.3e-56	100.	hypothetical protein SOVF_0344...	[more]
gi\|731317940\|ref\|XP_010669455.1\|	2.2e-33	71.7	PREDICTED: glycine-rich RNA-bi...	[more]
gi\|672175380\|ref\|XP_008807741.1\|	2.8e-20	64.7	PREDICTED: glycine-rich RNA-bi...	[more]
gi\|992278318\|gb\|KXG36665.1\|	3.6e-20	57.2	hypothetical protein SORBI_002...	[more]
gi\|514813405\|ref\|XP_004981486.1\|	1.8e-19	58.5	PREDICTED: glycine-rich RNA-bi...	[more]

BLAST of Spo07664.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RSF8_SPIOL	3.7e-56	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D0S7_BETVU	1.5e-33	71.7	Uncharacterized protein OS=Bet...	[more]
K4AH03_SETIT	1.2e-19	58.5	Uncharacterized protein OS=Set...	[more]
A0A0A9V281_ARUDO	2.8e-19	60.0	Uncharacterized protein OS=Aru...	[more]
A0A078F876_BRANA	3.6e-19	55.3	BnaA02g06700D protein OS=Brass...	[more]

BLAST of Spo07664.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RBG4_ARATH	3.3e-13	41.5	Glycine-rich RNA-binding prote...	[more]
MRD1_CANAL	5.6e-13	40.2	Multiple RNA-binding domain-co...	[more]
MRD1_EMENI	2.1e-12	38.8	Multiple RNA-binding domain-co...	[more]
MRD1_YARLI	6.1e-12	37.8	Multiple RNA-binding domain-co...	[more]
RBG8_ARATH	1.8e-11	40.9	Glycine-rich RNA-binding prote...	[more]

BLAST of Spo07664.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G46020.1	3.1e-22	54.8	RNA-binding (RRM/RBD/RNP motif...	[more]
AT3G23830.1	1.8e-14	41.5	glycine-rich RNA-binding prote...	[more]
AT1G73530.1	2.6e-13	43.7	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G59860.1	3.5e-13	47.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G39260.1	1.0e-12	40.9	cold, circadian rhythm, and RN...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..95 score: 1.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..98 score: 3.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 24..102 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 23..107 score: 3.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 25..105 score: 3.49
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 23..104 score: 2.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08670	0.65	Barchart \| Table