Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGTTACAAATAAATAACATATCCATGATTCTGTACAAATTGACAAGGGTATTTTGGTCAACCAAAAATATTTCTCTCTCCATCTCCATCTTAAGTCCCACCCTCTTTATATGAACACTTTCGCATTCCTTTCGTTCTCTTCATCATCCTTTGGGTATGTACCACTTTTTCCTCTATCTTCAAAAATCATTTTCTCACAAACACACCCTTTGGATCATAAAACACACCAAAATATTTGAAAATATTAGATAAATACATACTCAAACAAATACGAATACACAAAAGTTTTTTGAAAAATTAATTCATTTGACGAAAAACCTTTGAATTCATTCATATATTCATATATACCTTTAACAATTTCAGTTCTTCATTGATTTTTTGTCTTGTTTTGTTTTATATTAATTGCACAAATTTTGATTTTTCTTCGGTCAAATTCGGCGGAAATTTTGTTTGAATTTAGAAATTCAGAGTTCTGCAAATTCTAATTGAATGATAATTAGGAGAACAGGAGGTAAAAAGTTAGGGTTCGGAAATTTGAGGTTCGATCGAAGAGCCAAGGTTTTTCCGGCATCGACGGAGGAGATTGATAATATGGAGGTTAAGGTTTGTAGTCCTGCTGGAGATATATTGAGGAGGACGGTGGCCGGAGGTGGTGCTGTTGGTGGAGGAGGAGAGAGAAAGTTTAGCCATGAAAGTGAACATGACTTGGCGTTAATGGTGAGCGATTTTCTTGAGAACAATGGAAGCTGCGGTGCTGATTCATTGTGTAGCAGTGACAACGAGTCTGGCTTCTCCGATCTTCACCACCTCGCCGACAAGATTTCGGTACTTTTCTACTTCTTAATTAGCTGAATTTATTGTTCTTTTGGCTGAATTATAATGGAAATGGTTGATTTGTTGTGGAATTTAGATGTTTTTGAGCTGCTACAGTGAATTTGCGGGAAATTACTTTGAAATAATTGTCTGAGCTGATTTTTTTTATTTCGATCGGTTAAGGACATTTATAATTTTTAAACTAGCTAAATTTTGCTGTAAATGGTTCAAATTTGGTTTAGAATTTGATTTTCTATATGAAATTTGATTAGTTGAGCTGAAATTCGTTACGTTTACTTTAAGAAGTTTCAGGAAGTTACTTAAATAAGACGTTTTATGTTTGAATTGCACTTGCTTGCAAATGAGGGAATGAAATTTCAATTTGAATTTGTTGAAACCTGCCTGTTTGTTTGTGTAATGCTCATAGGTGTGGGGCAGTGAGTTACTGAATTCAATTAGCTGACGAGAAATTTATTTTCGGCTGATTTTGATGGNTGTTTGTGTAATGCTCATAGGTGTGGGGCAGTGAGTTACTGGATTCAATTAGCTGACGAGAAATTTATTTTCGGCTGATTTTGATGGAAATGGTTGATAGTTCTTGGAAAATTGGATTACTTTACAATGAATTTGGTTTAATTGTGTTTGAACAAATGATAATTTGGGATATCTTACAGTTACGGTTATGAATTTGCGGAAGCCACTTCCAAAGAAATGTGTAGATGTGATTGATACTTGCTTGGAAATGAGGGAATGTAATTCTGTTCTAAAATTATTGAAACTTTACTTTTTGAGGAAAAACAAATACTTTTAGTTTGAGTTTTGATCCTTCTGTTAGAAGCAGCTTCTCTGTCTTCGTTCTGGGTACCTAATTCGATTTCAAGCTTAAATTTGTGTATTTGTGTTTACCTTCAATATCTGGAGGGTAAATACTGCAGAAAATATATGAGTTCGGGTGTCTCAAATTGTTAATGTGTGTAGCTTGTTCAAAAATTACTTTTGTTCGGGAGACAGTCTGATTTGATAGTATTATACTATTAGTATTCAATTTGATTCATGTTTTACTCCATTGATATAGCTTTTGTGATATGATGCCTATCACATAAGATATTGCCCTGCCTTTCCTTGTACCTACTGTGAGTTCTTCTGTAATCTGTATATCTGTTAAGGAGAGATTTATATTTGCTTGTTGTCATTGTGCAGTTCTTTAAGCGCTCGGTGGATCAGTATGAGAGTGACTTGCAGTCTGTGGTCCAATCTCTCTTACTTTCTATGGATGTAAAGGAGCTTCAGCTTGTTAAATCTGGTCTATGCTATGGAAGCTGTATTCGTTATGCTTTGGTGAAGCTTCTCAGATCGTCAGGCTACGATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGTATAATCACATCCTCTATATCTCATTCAATAACATTTTTTAGCATACTCTATATTCCCGGTTAAATTGACATTTACGGCAGTTTCAAGTCGCATTAACAATCAATTCTGACTGAATAAAATTCCTCGAAGCTAGTAGCTTTTGCTGGTTCATGAGTTTAAGGATTTTATAGAGCATCTAACTGTAGTACTTTTTTGGGTTTATCCCTATTATGAAGTTATTGATTGTCCAACTTCGTTGGTGATAACTGATAAGCATGTGGGATGTTGAGAGAAAGTACACGTGTGTCATATATGTTGAATGTTTGCTGATGTTAGCTGTTGTAATTCGTGGTTAATGTTTGCTGAAATTCGTTTGATTCATGCCGAATGTTGGGAAATCAGAAATAGAATGTGCTGGCTTGAAGTTGGAAGTATGTATGCAATTTTACTTAATGAGGTGTGAGTTAAGATCGCTGTAATGGTTGTCGTTGTCTCCTTTCAAGTTTCAGTGCAGAACTATCTTGTTGTTTCTTCTGTTTTTATCGATCAGTTTTTATCTTATAGTAGACGTAAACTAATTGTGTTTCCTCTTCATTCCTTGCCCCAATGAAGGCGACCATGAATACATTGACGTGGTGAATTACTTAAATGACGGAAGCACAGAACGTTTGATAATTGATATTGATTTCCGAAGCCATTTTGAGATAGCAAGAGCTGTTGAATCATATGACAAGATTTTGAAATCTCTTCCAGTTGTTTTTGTGGGATCCTTGATAAAGCTGAAACAGTTCCTTCAAGTTATGGCTGAAGCTGCAAGGGTATCTCTGAAGCAGAACTCTATGCCTCTTCCTCCATGGAGATCCCTTGCTTATTTACTAGCTAAGTGGCATTCACCTCATCAGAGAATGGTGGTAACTTTAGAAGAACAGAATACTAATAATAGCTCTACTACAATCACGACCCATAAACAGTGCAATGGTCATCTAAGGCAGTTGCAGTCCTCCCTTCAGTCGGAAATTGGAACCGAGCGATTGCTGAAGCCTATAAAGAGTGATACAAGCAGAAGACTGAAACTTGAAAGGAGGAAAATCTCTTCATTCAGGACACCTTGAGCTCATGTACAGAAGAAGTTTTTGCTGCGGGAATTGTGACTTACATTGAGAGATACTTTTTTTTTTTTTTTTNACAGAAGAAGTTTTTGCTGCGGGAATTGTGACTTACATTGAGAGATACTTTTTTTTTTTTTTTTTGTCTTTTTTCTAAAACTTACAAAACCCAAAAATTCTTTCACTTCAAGAATAGGGGAATACAATCGACAATGAGATCATCTCATAGTTCAAGAAATTTACAACACAAGCAACGACATGTCGGCTTCATTCCACGTTCAAGAAATCTTGCTTCATTTTGCGTTCTTAAATCTCATTGCCGGGAATCCCTTGATTCTAAAGCATTCTTGATTCTTTCTTTTTCCCTTTTTTTTTTTTTTTTTTTTTTTTCTGGNTCTGGATCTTGTAATACGGAGTAGCTTTTACCATGTTTTCGGCATAGCCTATAAAAATGTATTCCTGGACCGTCATTTTTAGGTTCCCAGGAGATTTTGTCATATTCGTTTTCTTCCATTTTGTATTCTATACTCGTTGATGTAATCTCC AAAGTTACAAATAAATAACATATCCATGATTCTGTACAAATTGACAAGGGTATTTTGGTCAACCAAAAATATTTCTCTCTCCATCTCCATCTTAAGTCCCACCCTCTTTATATGAACACTTTCGCATTCCTTTCGTTCTCTTCATCATCCTTTGGGTATGTACCACTTTTTCCTCTATCTTCAAAAATCATTTTCTCACAAACACACCCTTTGGATCATAAAACACACCAAAATATTTGAAAATATTAGATAAATACATACTCAAACAAATACGAATACACAAAAGTTTTTTGAAAAATTAATTCATTTGACGAAAAACCTTTGAATTCATTCATATATTCATATATACCTTTAACAATTTCAGTTCTTCATTGATTTTTTGTCTTGTTTTGTTTTATATTAATTGCACAAATTTTGATTTTTCTTCGGTCAAATTCGGCGGAAATTTTGTTTGAATTTAGAAATTCAGAGTTCTGCAAATTCTAATTGAATGATAATTAGGAGAACAGGAGGTAAAAAGTTAGGGTTCGGAAATTTGAGGTTCGATCGAAGAGCCAAGGTTTTTCCGGCATCGACGGAGGAGATTGATAATATGGAGGTTAAGGTTTGTAGTCCTGCTGGAGATATATTGAGGAGGACGGTGGCCGGAGGTGGTGCTGTTGGTGGAGGAGGAGAGAGAAAGTTTAGCCATGAAAGTGAACATGACTTGGCGTTAATGGTGAGCGATTTTCTTGAGAACAATGGAAGCTGCGGTGCTGATTCATTGTGTAGCAGTGACAACGAGTCTGGCTTCTCCGATCTTCACCACCTCGCCGACAAGATTTCGTTCTTTAAGCGCTCGGTGGATCAGTATGAGAGTGACTTGCAGTCTGTGGTCCAATCTCTCTTACTTTCTATGGATGTAAAGGAGCTTCAGCTTGTTAAATCTGGTCTATGCTATGGAAGCTGTATTCGTTATGCTTTGGTGAAGCTTCTCAGATCGTCAGGCTACGATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGCGACCATGAATACATTGACGTGGTGAATTACTTAAATGACGGAAGCACAGAACGTTTGATAATTGATATTGATTTCCGAAGCCATTTTGAGATAGCAAGAGCTGTTGAATCATATGACAAGATTTTGAAATCTCTTCCAGTTGTTTTTGTGGGATCCTTGATAAAGCTGAAACAGTTCCTTCAAGTTATGGCTGAAGCTGCAAGGGTATCTCTGAAGCAGAACTCTATGCCTCTTCCTCCATGGAGATCCCTTGCTTATTTACTAGCTAAGTGGCATTCACCTCATCAGAGAATGGTGGTAACTTTAGAAGAACAGAATACTAATAATAGCTCTACTACAATCACGACCCATAAACAGTGCAATGGTCATCTAAGGCAGTTGCAGTCCTCCCTTCAGTCGGAAATTGGAACCGAGCGATTGCTGAAGCCTATAAAGAGTGATACAAGCAGAAGACTGAAACTTGAAAGGAGGAAAATCTCTTCATTCAGGACACCTTGAGCTCATGTACAGAAGAAGTTTTTGCTGCGGGAATTGTGACTTACATTGAGAGATACTTTTTTTTTTTTTTTTNACAGAAGAAGTTTTTGCTGCGGGAATTGTGACTTACATTGAGAGATACTTTTTTTTTTTTTTTTTGTCTTTTTTCTAAAACTTACAAAACCCAAAAATTCTTTCACTTCAAGAATAGGGGAATACAATCGACAATGAGATCATCTCATAGTTCAAGAAATTTACAACACAAGCAACGACATGTCGGCTTCATTCCACGTTCAAGAAATCTTGCTTCATTTTGCGTTCTTAAATCTCATTGCCGGGAATCCCTTGATTCTAAAGCATTCTTGATTCTTTCTTTTTCCCTTTTTTTTTTTTTTTTTTTTTTTTCTGGNTCTGGATCTTGTAATACGGAGTAGCTTTTACCATGTTTTCGGCATAGCCTATAAAAATGTATTCCTGGACCGTCATTTTTAGGTTCCCAGGAGATTTTGTCATATTCGTTTTCTTCCATTTTGTATTCTATACTCGTTGATGTAATCTCC ATGATAATTAGGAGAACAGGAGGTAAAAAGTTAGGGTTCGGAAATTTGAGGTTCGATCGAAGAGCCAAGGTTTTTCCGGCATCGACGGAGGAGATTGATAATATGGAGGTTAAGGTTTGTAGTCCTGCTGGAGATATATTGAGGAGGACGGTGGCCGGAGGTGGTGCTGTTGGTGGAGGAGGAGAGAGAAAGTTTAGCCATGAAAGTGAACATGACTTGGCGTTAATGGTGAGCGATTTTCTTGAGAACAATGGAAGCTGCGGTGCTGATTCATTGTGTAGCAGTGACAACGAGTCTGGCTTCTCCGATCTTCACCACCTCGCCGACAAGATTTCGTTCTTTAAGCGCTCGGTGGATCAGTATGAGAGTGACTTGCAGTCTGTGGTCCAATCTCTCTTACTTTCTATGGATGTAAAGGAGCTTCAGCTTGTTAAATCTGGTCTATGCTATGGAAGCTGTATTCGTTATGCTTTGGTGAAGCTTCTCAGATCGTCAGGCTACGATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGCGACCATGAATACATTGACGTGGTGAATTACTTAAATGACGGAAGCACAGAACGTTTGATAATTGATATTGATTTCCGAAGCCATTTTGAGATAGCAAGAGCTGTTGAATCATATGACAAGATTTTGAAATCTCTTCCAGTTGTTTTTGTGGGATCCTTGATAAAGCTGAAACAGTTCCTTCAAGTTATGGCTGAAGCTGCAAGGGTATCTCTGAAGCAGAACTCTATGCCTCTTCCTCCATGGAGATCCCTTGCTTATTTACTAGCTAAGTGGCATTCACCTCATCAGAGAATGGTGGTAACTTTAGAAGAACAGAATACTAATAATAGCTCTACTACAATCACGACCCATAAACAGTGCAATGGTCATCTAAGGCAGTTGCAGTCCTCCCTTCAGTCGGAAATTGGAACCGAGCGATTGCTGAAGCCTATAAAGAGTGATACAAGCAGAAGACTGAAACTTGAAAGGAGGAAAATCTCTTCATTCAGGACACCTTGA MIIRRTGGKKLGFGNLRFDRRAKVFPASTEEIDNMEVKVCSPAGDILRRTVAGGGAVGGGGERKFSHESEHDLALMVSDFLENNGSCGADSLCSSDNESGFSDLHHLADKISFFKRSVDQYESDLQSVVQSLLLSMDVKELQLVKSGLCYGSCIRYALVKLLRSSGYDAAVCASKWQGCNKVPGGDHEYIDVVNYLNDGSTERLIIDIDFRSHFEIARAVESYDKILKSLPVVFVGSLIKLKQFLQVMAEAARVSLKQNSMPLPPWRSLAYLLAKWHSPHQRMVVTLEEQNTNNSSTTITTHKQCNGHLRQLQSSLQSEIGTERLLKPIKSDTSRRLKLERRKISSFRTP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01783.1 vs. NCBI nr
Match: gi|902202352|gb|KNA14247.1| (hypothetical protein SOVF_109140 [Spinacia oleracea]) HSP 1 Score: 686.8 bits (1771), Expect = 2.000e-194 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 1
BLAST of Spo01783.1 vs. NCBI nr
Match: gi|731315254|ref|XP_010690601.1| (PREDICTED: uncharacterized protein LOC104904106 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 509.6 bits (1311), Expect = 4.300e-141 Identity = 270/315 (85.71%), Postives = 285/315 (90.48%), Query Frame = 1
BLAST of Spo01783.1 vs. NCBI nr
Match: gi|641850438|gb|KDO69311.1| (hypothetical protein CISIN_1g021888mg [Citrus sinensis]) HSP 1 Score: 389.0 bits (998), Expect = 8.500e-105 Identity = 210/306 (68.63%), Postives = 236/306 (77.12%), Query Frame = 1
BLAST of Spo01783.1 vs. NCBI nr
Match: gi|728847341|gb|KHG26784.1| (Cruciferin BnC2 [Gossypium arboreum]) HSP 1 Score: 388.3 bits (996), Expect = 1.500e-104 Identity = 205/282 (72.70%), Postives = 230/282 (81.56%), Query Frame = 1
BLAST of Spo01783.1 vs. NCBI nr
Match: gi|567886024|ref|XP_006435534.1| (hypothetical protein CICLE_v10032209mg [Citrus clementina]) HSP 1 Score: 386.7 bits (992), Expect = 4.200e-104 Identity = 209/306 (68.30%), Postives = 235/306 (76.80%), Query Frame = 1
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R612_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109140 PE=4 SV=1) HSP 1 Score: 686.8 bits (1771), Expect = 1.400e-194 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 1
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX47_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024750 PE=4 SV=1) HSP 1 Score: 509.6 bits (1311), Expect = 3.000e-141 Identity = 270/315 (85.71%), Postives = 285/315 (90.48%), Query Frame = 1
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Match: A0A067G1F7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021888mg PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 5.900e-105 Identity = 210/306 (68.63%), Postives = 236/306 (77.12%), Query Frame = 1
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PQT4_GOSAR (Cruciferin BnC2 OS=Gossypium arboreum GN=F383_01431 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 1.000e-104 Identity = 205/282 (72.70%), Postives = 230/282 (81.56%), Query Frame = 1
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Match: B9HMI1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05620g PE=4 SV=2) HSP 1 Score: 386.7 bits (992), Expect = 2.900e-104 Identity = 204/295 (69.15%), Postives = 235/295 (79.66%), Query Frame = 1
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Match: AT2G39650.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 293.5 bits (750), Expect = 1.700e-79 Identity = 158/275 (57.45%), Postives = 208/275 (75.64%), Query Frame = 1
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Match: AT4G14620.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 128.3 bits (321), Expect = 9.600e-30 Identity = 94/284 (33.10%), Postives = 151/284 (53.17%), Query Frame = 1
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Match: AT3G07350.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 123.6 bits (309), Expect = 2.400e-28 Identity = 82/260 (31.54%), Postives = 138/260 (53.08%), Query Frame = 1
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Match: AT2G38820.2 (Protein of unknown function (DUF506) ) HSP 1 Score: 117.5 bits (293), Expect = 1.700e-26 Identity = 80/235 (34.04%), Postives = 129/235 (54.89%), Query Frame = 1
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Match: AT3G22970.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 112.8 bits (281), Expect = 4.200e-25 Identity = 88/271 (32.47%), Postives = 125/271 (46.13%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01783.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01783.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01783.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo01783.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|