Spo18740.1 (mRNA)

Overview
NameSpo18740.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPolynucleotidyl transferase isoform 1
Locationchr6 : 34354856 .. 34361194 (-)
Sequence length780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGTTTAGATCAGTATACTCATATTTACAAATTGAAAACCTCTCTTCTCTCTACTCTCTTCTCTCTCTTCGAATCCTAAGACTCCCAACTCTGTCGCCCTAAGCAGCCGAGTAGATTGACGTCTTGTCGTTGCCCGATTGAAGGAGAAGCTGCTCCGGTGGCACTGGAAACAACTCAACATCTCTAATCCCATTGGTTCTCGATTTCAGGTGCTTAATTTCTTTTTAAATTGAACTTAAAATAGTTACTAGTTAGTAGTTAGGGTTCTTCACTTATTTCCTTGTAAAATTGAATTTAAAATAGGTTTGCATTTACTTTGTTAAATGTTGTTAGATTGGTAATTGACAGTTTATGATCAGATTACTCACCTAGTTCATTTGTCATTTGTAGATTAGAACTCTATTTAGTATTTACCTTATTGATTTTATTATGTTGATGGTTCATGATTTATGAATTCGTATTTGGTAGTACCGTAGTTGAATACAGACTAAGATTAGTATTTTGGGCTACCGCATGAAACTACATTCTACTAATCTATTATTGTTCCTCATTACAAACTCCTTGCATTACCAATTGAGGTTGGCATTAGTGGTTAAGGACCTCTTGCTCGGGTTCGAGCCTTGTGAATGGAAAAAATCTCAACAGGGAGGGATGTTGCCCATCGAGGTACCATGCAAACTCCCACAGGAGATTACATCGCCGACGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAACAATTTCACAAACAATTGAGTCAACTTCAGATCGTAGTAGAACCAAAAAAACAATTTCACAAACAATTGAGTCAACTTCAGATTATATAAGTTTAAATTAAAGAAAAAAATATCATTTTACCTAAGATAACTTTAAATAAATTTAGAAAAAATAAGTTGAACCAAACATTTCATCCACTTCCTTTCCAAAAAGAAAAAGAAAAAAACAAAAAAAAGGCCATATCGGTCACAACCCAAGCCCAGAGACGAAACCCGATTGATTCAAAGACACCGGTAATTCTTTTTCTTCTTTCTTCCTCCTTTCGTTTCCAGTAGAAACCACCTTCTCAGAATTCTAACGCGAAATTTTAGTAACCTGGTAGGAGATCAATGGTGGGTTTACATTCAATTTTCTCTTTGTCAACTTTAGTTGATTTATGATAATTTCATCTTAAATTCGTAAGTGTCTTCTGCCATTATGTTTTTGATTTCCTGAACTATATGAAGACGAAATTTCATGAGTATGGATTAATTAGTAGCAAAAGATTTCTTTAACCAGTTTTCTCGCCTAAAAACAATTGAAGATTTCACAGAATTGTAAAGTGCTAGATTTTGTATCAAATGTGCATACCAACTGTTTGATAAAATGCCCCAATGAACTAGTGCTGTATTTTCCTCTATAATATCTACTGATACTTATTATTACTTGTGAGTGTACTGATTCTTTGCTAAATGGGTTGCAGTGATAATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGGTAAATTTTGCAATCTATGCATTGCAAAGGAAATTCCAACTTGAGTACTTTTAGTAATGTTGAAATAAGCATGGTTTTGATGGCTTGTAAATTTTGTTTCTCCTGAATGAAAGTTTGCAGCATTTGACAGTTATGCAGTCCATACTCGAACTTAGTCTTGTAGTCGATACTTATTTATCTTCGTATGTTGTACTTCTGTTCTGGAATTTTACATGAACCTGTTGTTACCTTGCAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGGTAAATTTGTCTCATCTTTATACCTTCCTATACAGGGCTTTGTTCAGACATTTCAGTTTGATTATGATTGTTATTTTCTTATGTCTACTTACAATGGAACTGTACTATTTTTAATTCTAACAATTCTTTCTTCTTACTTGTAGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGTATGTTCTCCTAATGGTCGTGGAATATATGAGTTGTTAACACTTTTTGTTTAATGCTTTTCCACTGTGTTGATCAGGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGGTAACTAATATCCAATAGATTCTTCCTCGGTAGAAATCATTCCTCAAAAGTGTAATACCTCTTTTATTGATGATTTTATTTGGGGTTTCAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGTAAGAGTTGCGAAATGCTTGAGCCTATCCATATTCTTGATGTTGTCCAAATTGTTTATAGGTTTAACTGTGAAACCAATTAGAACACGTGTAACATATGCATTGAAATATTTATCTGAGAATACCCTATTATTGGAACAGGGGTATCTGGATTATGTCAACCGGTGTGGCGTGAATCCTGATGTCAAAGATCATGCTGGGAACAGTTGAGTAGCTCTTTCTCCATTGTGTGCTGATATGTTGTCAAATTGTTGTACGTTTGCATAGGGATGTTTCATGTTTAGCTCTTGGATTTCCCTCTGCGTTGTGTTTTAACTTGTATGAAAAACATTAACCGGATGAGCTAACATTGCTATGTTATATGGCCTTTTCCATACAACAATTCAATCTCTAACTTGGGGCAATATGTCTAAGCTCTGTTTCATTTGAATGCAATACTCGAGGACTGGAAAGTGAATACATAGAGCAATATGTCTAGCTCTTCAAAACATTTTTCTCAGAAAATTGTTTCTGGGAACTGGTTTGAACATATGGTAGGGTAGGTAGACTTGGGGTGAACATAACTGTAGGCTAAATGGTAGCTAGAGAAACTTAACCAGAACAGTGAACTAAATCCCCTATAACAAGAACCAAAACAAACCTCCATTTCATCGACATTAGCGTTTATCATACCTTCTTGAGCGAAGAACACTGAACTAAATCCCCTATAACAGGGAATTTAATGTAATGAAGACAGTAGGATGCCACGAATATTCAACATATATAGTCTTTGCCATTGGACCAACACCTCATATTTGAACAAAATCTCAATACAAAATCATAAACATGTGCTTGCTGCCTCAAGCCACATAGATGGTGTAAGTTTTATATAACGTAAAGCATTCGATAGCTGGGGATTTTACAGATAGATGATAAATGTGACGGAAGCATAAAAAGCAATGTGAATACGGTGGTCACAAGCCGAACTCTAACATGACTCGTTTCAACCAACTCAAACCGAGTTCGAACTTGAACTCGCCTCAATCTTTAAAATCTTTATCAAGCTATCAAGCTAGGTTTTATAAGTATTTTTTGAGTTCGAGTGAAACTTCAAGCCTTTTTCAAGCCTGCACAACTGCACACGATAAAAAGTACGGAGTATATGCTGATAATAAACGGAACAATATATTAAAAAGTTTCTTAATCAATACTAAATTAAAAGATTATTGGAAAATTTATGTAAAAAGTTCGACATTAGGCATTACGGAGTAGTATAATTATTCTTAATCAACATGTATTATTTTTAACGGGCGCTTTCGAGCTGAATAACAATTTGAGTTTGGTTCATTTAGTTACCAAACAATAAATTCAAGCTTAAGCTTGATTCATTAACAAACGAATCGAGCCGGATCTAAATAATCAGGACACATGAGGACATGAATTGGTGTAAATTCACTTGAACATATAAATTAATAACTTAAAAAAGAAGAAGCATAAATCATATTTTTTTTTTGACAACTAACTACACAATCATAAGCTTAGTACCTCAAGGCTCAAGCCACATAAATGGTGTAGATTTACTATAATGAAATGGACCATCATAATAGCTATGAATATGATTGCCTGCTAAACTGTAAACACCCATGTCCTTACCCCTGCTATTTGATTCATACATATGTCTATGGCGATCCGCCTTAAAATCATCTGTAAAATAAATGGAGTTAGGTTTAAAGACTTTATCAACAGAGACATTAACGGAATAAGAAGAGTTTGAACCCACGAAAATTGCTATATCCTCCAAGTGAACTACTCTGTCAGCCGTCCCATTGTGAATATTTAGCTCAAATACCTCGAATGACATGGTTCGATAGATTTGATCACACAATCTTTTCCGTCTACAAACAAGCAATAATCGATCCGAAGATTCAACCAAGTAGTTAATTGTAAGTCCATGAGCTGCTTCCCTTTCCTTGATCAATCGGCCATGAGGTTCACCCGATTGGTCGAATTCAAAGCAACACTAGTGGAAAAACAATCATTTGCATCACCACATTTGCCTCGCACATTTAAACATGTGACGCAATTGACAGTTCTAAGCTTTAAAATTAGTCATTTGCGTCGCAGAATTATTAATCTGCGACGCAAATGACTCTAAAATGTTCTCAGAGTCATTTGCGTCGCAGATTAGTAATAATGCGACGCAAAATATTACCTCCTTTGCGTCGCAGAATTACTAATCTGCGACGCAAATGACTCTTTAAGTCACCTGCGTCGCAGATTAGTAATTCTGCGACGCAGAGGAGGTAAAAAAAATTCGGAAGTTTTTAATTATTCCTCACCCACGCGTACTGCACCCTAATTTGTCGAAGAACAAAACAAACAGGCGCAGCTACCTTCACGACTTCACCCTCATCCTCCATCGATCTTCGATCTTCTTCACCCTCATCCTCCATCGATCTTCTTCACCCTACACCAGGCGCAGCTACATTTAGAGAGAGTTTCGCTGGAACCGTAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGGTACACTTACTTACCCTCAATTTCCATCTTCTTCACCCTAATTCTTCAATTGATTCCCTTATTTACTCAATCAGGTACACTTTCATTGAATTTTGTGGTTACTTTTTTGTTTAATTTGAAAGATTTAGGGTTTCTTTTTTTGGGTTTGGGATTTGGTGAGAAATTACGTGAATTAGGTCACTAATTTCCAATAATTTAGAACAATGAGGGGGTGAGTGTGCGTAATATTTTGCTAGGGATTATGAATTTGTTTTTGTTAATTTTGCGCAGATTTTTTTTGTTCTGACATTGTGTTCATTTGAATGTTCTGTTGCAGTGGTTTGGCTGAATTGAGTCTCGTTTGGGAGTAAGAAGATTTACTCCGATGGTAAGTTTCATTCCTCATGTTTCCAAAATGTATGAGACTATAGTAAGACTTTGAATTATTGTTGTTTGTTCTTGATTAAGCTATACATTTTGGCTTGCAAATGTTAATCAGCTTGAAGTTGTATGAATTCAGATAGAAGTTTGTATCTTTCTTCTTTACTTACTGACTTTGAATAACTCTCTTTGTTTCCTTTTTTTCTTCTTCTTAATTTTAGTTTTCATCCGAAATTTGCATTGTTTGTTTTAGAATGATTGATTGTTGTGATATATTGTGATTTCTTTGCTAGATTTTTTAATCTTTCCCCCCTTAATTTCCTGGTATATTTCTTGTTGATTTCATAGATGTTTTTATTGATTTGGATTGGTTAGTTAGTGTTATAGTTGAGAATAATGGTTGGTTATTGATCTGGTTAGCGCTTTTAGAGTTTTGTTGGAAAGTTGAGAATTTTTGGTTTAATTTCTGAAGTAGACTAGAAATGTGTCATGAGGAAGGGGAATAAGGTGCAGTGATATACAATGTCCTCTTAATAATATCAGTTAATGGCGACCAATTTGACCATAGACTGGTCGTTCCAGACTCCAGAACGAACTTGCTTAAAGTTATAGTAAAAAGCCTAGAACATCAGTTAGGACAGATTTGTGGCTTAGTGTCGCACGAACGCTGTAAATTCATAATTTAGTGTGCTTCAATTTTAATTTCTCGGCTTTTTTTTTCTCGGTTCAAATTTTTATTTTTATTTCATATTGTAATTTGTTTGATTTTGGTCTGACAATGGAGTTTTTTTATGTAACAGGCGAATATGCCGGAGAAATTGAACCAGTGTAAGCTTGATGCTCGCCGTGAACAATGCCTTTCGCAAGGTCCTGCATTCATTTTCTTTTCTTTTTTTGATTTTTACAGTTGTGTATTTTTCTTGCATAAATTAA

mRNA sequence

ATAAGTTTAGATCAGTATACTCATATTTACAAATTGAAAACCTCTCTTCTCTCTACTCTCTTCTCTCTCTTCGAATCCTAAGACTCCCAACTCTGTCGCCCTAAGCAGCCGAGTAGATTGACGTCTTGTCGTTGCCCGATTGAAGGAGAAGCTGCTCCGGTGGCACTGGAAACAACTCAACATCTCTAATCCCATTGGTTCTCGATTTCAGTGATAATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGTTGTGTATTTTTCTTGCATAAATTAA

Coding sequence (CDS)

ATGAGGTATGTGAAACCACTATGCTTGTTTCAAGATTTGGTTAAGACGACAAATGCACTCGAACGAGGTCGATTTTTGGGCTTAGATGTTGGTGGTAAATACGTCGGACTTGCAGTTTCAGACCCAGATAACAAAATTGCAATACCTGTAAGTGTTTTACTCCGAAAGAAATCCAATATTAACATGATGGCTGCTGATTTCACAAGTTTGATATCAGAGTTTTCTCTATCAGGCTTTGTTGTTGGTTGCCCTTTCGATAGACAGCGTCCAAGTGCAGATGCTGCGCAAGTGAAAGTTTTTGTAGATGATCTGTGCAACACTGGGAAACTAGAAGGTGTGAAATATACATATTGGAACGAGTGCTATACGTCAAAGAATGTCGACTTACTTTTGAAGCCACTGTCGTTACATCCAGTGGAATTAAAAACTATGCTTGACAAATTTGCCGCCGTGGGAATTTTGCAGGCCACAGCCGCCGCCGCCGCCGCCTCCATTGGAGAATGCCCACTGAATAGGAATCGATCCCTGTCTCCATCAGTTGTGTATTTTTCTTGCATAAATTAA

Protein sequence

MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQATAAAAAASIGECPLNRNRSLSPSVVYFSCIN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18740Spo18740gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18740.1Spo18740.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18740.1.utr5p.2Spo18740.1.utr5p.2five_prime_UTR
Spo18740.1.utr5p.1Spo18740.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18740.1.CDS.7Spo18740.1.CDS.7CDS
Spo18740.1.CDS.6Spo18740.1.CDS.6CDS
Spo18740.1.CDS.5Spo18740.1.CDS.5CDS
Spo18740.1.CDS.4Spo18740.1.CDS.4CDS
Spo18740.1.CDS.3Spo18740.1.CDS.3CDS
Spo18740.1.CDS.2Spo18740.1.CDS.2CDS
Spo18740.1.CDS.1Spo18740.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18740.1.exon.8Spo18740.1.exon.8exon
Spo18740.1.exon.7Spo18740.1.exon.7exon
Spo18740.1.exon.6Spo18740.1.exon.6exon
Spo18740.1.exon.5Spo18740.1.exon.5exon
Spo18740.1.exon.4Spo18740.1.exon.4exon
Spo18740.1.exon.3Spo18740.1.exon.3exon
Spo18740.1.exon.2Spo18740.1.exon.2exon
Spo18740.1.exon.1Spo18740.1.exon.1exon


Homology
[Close]
BLAST of Spo18740.1 vs. NCBI nr
Match: gi|902148557|gb|KNA05257.1| (hypothetical protein SOVF_192110 isoform B [Spinacia oleracea])

HSP 1 Score: 314.3 bits (804), Expect = 1.400e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155
[Close]
BLAST of Spo18740.1 vs. NCBI nr
Match: gi|902148556|gb|KNA05256.1| (hypothetical protein SOVF_192110 isoform A [Spinacia oleracea])

HSP 1 Score: 314.3 bits (804), Expect = 1.400e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155
[Close]
BLAST of Spo18740.1 vs. NCBI nr
Match: gi|731341874|ref|XP_010682115.1| (PREDICTED: uncharacterized protein LOC104897013 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.5 bits (680), Expect = 3.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 1   MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 61  DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 121 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 154
[Close]
BLAST of Spo18740.1 vs. NCBI nr
Match: gi|870856210|gb|KMT07887.1| (hypothetical protein BVRB_6g145830 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.5 bits (680), Expect = 3.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 163 MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 222

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 223 DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 282

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 283 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 316
[Close]
BLAST of Spo18740.1 vs. NCBI nr
Match: gi|224053911|ref|XP_002298037.1| (hypothetical protein POPTR_0001s09310g [Populus trichocarpa])

HSP 1 Score: 234.6 bits (597), Expect = 1.400e-58
Identity = 114/155 (73.55%), Postives = 135/155 (87.10%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YV+PL LF +L+KT+ A+ +GRFLGLDVG KYVGLAVSDP NKIA P+SVLLRKKSNI
Sbjct: 1   MKYVRPLSLFHELLKTS-AINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
            +MA DF SLISE SL GF+VG PFDRQR + DA +VK+FVDDLC TGKLEGVK+TYW+E
Sbjct: 61  ELMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LL+KPL LHPV  K+++DKFAAVGILQ
Sbjct: 121 CFTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQ 154
[Close]
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDB2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192110 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.900e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155
[Close]
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFD2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192110 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.900e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI
Sbjct: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE
Sbjct: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ
Sbjct: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 155
[Close]
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Z4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 163 MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 222

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 223 DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 282

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 283 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 316
[Close]
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EXD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145830 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.400e-68
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+++KPL LFQDL+KT NALERGR LGLDVG KYVGLA+SDP+NKIA P+SVLLRKK NI
Sbjct: 1   MKHMKPLSLFQDLLKT-NALERGRLLGLDVGDKYVGLALSDPENKIATPLSVLLRKKFNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           +MMAADFTSLISEFSLSGF+VGCP+DR RPS  A QVKVFVDDLC TGKLEGVKYTYWNE
Sbjct: 61  DMMAADFTSLISEFSLSGFIVGCPYDRLRPSPHAVQVKVFVDDLCKTGKLEGVKYTYWNE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LLLKPL+LHPVELKTMLDKFAAVGILQ
Sbjct: 121 CFTSKNVELLLKPLTLHPVELKTMLDKFAAVGILQ 154
[Close]
BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Match: B9GKI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09310g PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.000e-58
Identity = 114/155 (73.55%), Postives = 135/155 (87.10%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YV+PL LF +L+KT+ A+ +GRFLGLDVG KYVGLAVSDP NKIA P+SVLLRKKSNI
Sbjct: 1   MKYVRPLSLFHELLKTS-AINQGRFLGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
            +MA DF SLISE SL GF+VG PFDRQR + DA +VK+FVDDLC TGKLEGVK+TYW+E
Sbjct: 61  ELMATDFQSLISELSLGGFIVGYPFDRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
           C+TSKNV+LL+KPL LHPV  K+++DKFAAVGILQ
Sbjct: 121 CFTSKNVELLVKPLDLHPVHAKSIMDKFAAVGILQ 154
[Close]
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_NITHX (Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_2279 PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 9.400e-10
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 1 

		  

Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  L RK    +  AA   ++  E + +GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F     N  +L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFAR---NLARLTDLAIGLWDERLSTVAVERELIGMDMSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D+ AA+ ILQ
Sbjct: 137 KRAKVIDEHAAIFILQ 147
[Close]
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRASB (Putative pre-16S rRNA nuclease OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=BBta_4721 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.400e-10
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 1 

		  

Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  + RK    +  AA   ++ SE  + GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAISSERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L N   L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAN---LTDLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
               ++D  AA+ ILQ
Sbjct: 137 RRAEVIDTHAAIFILQ 147
[Close]
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_EUBE2 (Putative pre-16S rRNA nuclease OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-9
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1 

		  

Query: 24  RFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSN-INMMAADFTSLISEFSLSGFVVG 83
           R +GLDVG K VG+A+SDP    A P   + RK++N +    A    +ISE+ ++  VVG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 84  CPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPVELK 143
            P  +        + K   +      +  G+  T W+E  T+   D +L+   +     K
Sbjct: 62  YP--KNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRENRK 121

Query: 144 TMLDKFAAVGILQ 156
           T++D+ AAV IL+
Sbjct: 122 TVIDQLAAVFILR 132
[Close]
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRASO (Putative pre-16S rRNA nuclease OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO4497 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.100e-9
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 1 

		  

Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVSDPD ++A  V  + RK    +  AA   ++ +E  + GFV
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKAD--AARLLAICAERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L     L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAG---LTDLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D  AA+ ILQ
Sbjct: 137 KRAEVIDTHAAIFILQ 147
[Close]
BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Match: YQGF_BRADU (Putative pre-16S rRNA nuclease OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=blr5094 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.100e-9
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 1 

		  

Query: 21  ERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNINMMAADFTSLISEFSLSGFV 80
           ERG  +GLD+G K +G+AVS+PD ++A  V  + RK       AA   ++ +E  + GFV
Sbjct: 17  ERGGLVGLDLGTKTIGVAVSNPDRRLATGVETIQRKA--FKQDAARLLAIAAERKVVGFV 76

Query: 81  VGCPFDRQRPSADAAQ-VKVFVDDLCNTGKLEGVKYTYWNECYTSKNVDLLLKPLSLHPV 140
           +G P +        AQ  + F  +L N   L  +    W+E  ++  V+  L  + +   
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNLAN---LTTLPIGLWDERLSTAAVERELIGMDVSRA 136

Query: 141 ELKTMLDKFAAVGILQ 156
           +   ++D+ AA+ ILQ
Sbjct: 137 KRAEVIDEHAAIFILQ 147
[Close]
BLAST of Spo18740.1 vs. TAIR (Arabidopsis)
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.900e-46
Identity = 92/155 (59.35%), Postives = 117/155 (75.48%), Query Frame = 1 

		  

Query: 1   MRYVKPLCLFQDLVKTTNALERGRFLGLDVGGKYVGLAVSDPDNKIAIPVSVLLRKKSNI 60
           M+YVKPL L  + +KT  ++  GRFLGLDVG KYVGLA+SDP N +A P+SVLLRKKSNI
Sbjct: 1   MKYVKPLSLLGNALKTKVSVP-GRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNI 60

Query: 61  NMMAADFTSLISEFSLSGFVVGCPFDRQRPSADAAQVKVFVDDLCNTGKLEGVKYTYWNE 120
           ++MA DF +L+  FS+SG VVG PF +     D   V +F+++L  T KL+ VKYTYW+E
Sbjct: 61  DLMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDE 120

Query: 121 CYTSKNVDLLLKPLSLHPVELKTMLDKFAAVGILQ 156
             +SK V+L+LKPL+LHPV+ KTMLDK AAV ILQ
Sbjct: 121 RLSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQ 154
The following BLAST results are available for this feature:
BLAST of Spo18740.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902148557|gb|KNA05257.1|1.4e-82100.hypothetical protein SOVF_1921... [more]
gi|902148556|gb|KNA05256.1|1.4e-82100.hypothetical protein SOVF_1921... [more]
gi|731341874|ref|XP_010682115.1|3.4e-6884.5PREDICTED: uncharacterized pro... [more]
gi|870856210|gb|KMT07887.1|3.4e-6884.5hypothetical protein BVRB_6g14... [more]
gi|224053911|ref|XP_002298037.1|1.4e-5873.5hypothetical protein POPTR_000... [more]
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BLAST of Spo18740.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QDB2_SPIOL9.9e-83100.Uncharacterized protein OS=Spi... [more]
A0A0K9QFD2_SPIOL9.9e-83100.Uncharacterized protein OS=Spi... [more]
A0A0J8C2Z4_BETVU2.4e-6884.5Uncharacterized protein OS=Bet... [more]
A0A0J8EXD0_BETVU2.4e-6884.5Uncharacterized protein OS=Bet... [more]
B9GKI3_POPTR1.0e-5873.5Uncharacterized protein OS=Pop... [more]
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BLAST of Spo18740.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YQGF_NITHX9.4e-1031.6Putative pre-16S rRNA nuclease... [more]
YQGF_BRASB9.4e-1032.3Putative pre-16S rRNA nuclease... [more]
YQGF_EUBE21.2e-931.5Putative pre-16S rRNA nuclease... [more]
YQGF_BRASO6.1e-930.8Putative pre-16S rRNA nuclease... [more]
YQGF_BRADU6.1e-930.8Putative pre-16S rRNA nuclease... [more]
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BLAST of Spo18740.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G52905.13.9e-4659.3Polynucleotidyl transferase, r... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 23..162
score: 14
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 24..156
score: 8.9
IPR006641YqgF/RNase H-like domainGENE3D3.30.420.140coord: 22..156
score: 5.6
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 23..127
score: 5.0
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 23..156
score: 5.31
NoneNo IPR availablePANTHERPTHR33317FAMILY NOT NAMEDcoord: 1..155
score: 6.1
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE/ RIBONUCLEASE H-LIKE PROTEINcoord: 1..155
score: 6.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0016740 transferase activity