Spo11681.1 (mRNA) | SpinachBase

Overview


Name	Spo11681.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ras-related protein Rab-18
Location	chr5 : 31187244 .. 31193022 (+)
Sequence length	1415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCAAACGTCACATTCATAACAAGTAAACAAATAGTGGTGACCAAATTCAAGACCCCGCCTCGAAAATAACGGGTTTTGAACTTGAAAACTTAAAACAAGCCGTAAGTTTCACGCGCCAACACTTCCTGAGTTCCTTCTTCTCTTCATCTTCCTCCTCAGGGTGCCAGGTGCTTGTTTCTGTATCACGACACGTCATCCAAACGGTATTCGAAGTTTCTCTCTCCTCCATTACAGAATCAGTACAGAGGAAGAAAGCCACCCAACAATTCCCTTACTTTCTCGCCGTTTTCTCTCAACTATAAAATAAGATATTCGTTTTCCCGTTAGTTAGCTCATCTTTTTGCTGGAATAAAAAGCAGCAATTACAGAGAGAAAGAAAGAAAGGAAGGAAGAAAGTGTAGGAGAGAGAAAAGATGGTTTCGAGCTCGAATAATAGTAATAATACAACTAACTATGATCTATCATTCAAGGTGTTGTTAATCGGTGATTCTGGAGTTGGCAAGAGTAGTTTGCTTGTTAGCTTCATTTCTAACGCCGTTAATCATGATGATCTTTCTCCTACTATTGGTAATTTCATCCCTTTTTTATTTTATTTTTTAAGATCATACTTGCCGACAATTCTACTTTCTGTCATTTACTGATTTTTAGTCTTGTGTTTCTATTAATTGGATTGCTGTTGAATTACCTTGATTTTCGATGTAGATTTCGATATCGAATTCCACTTTGTGGATCTGGATTTTGTGTTTCTGGATGAATTGCTTGCTTGTTTGTTGGTATAATTTGAGATAAAGTGGGTTAATACAATAGTACACTTTCCGTTACCGGGTTGGTTATCGTCAAGTTAAAGGAACTGACTAAAATAGAAAGCCTGACCAACTTAGGGGAACGGATTCTTAGCAATTTTGCATTTTTGTTACTGACATATTATGTGTTAGCACTTAAGAGGTTGTATTTGGGTTACTTATAGGTTTAGAAATCTTCCTCCTGGAGTAGTTTTAGTAACTTATGTTGATGAGTTGACAAATTCTATGCTTTTGTAATTCTTGTTTTGTTATTTAAGGATTTGTTGTAATTTATTTGTATATAAAGAATTTGCTTAAGATTTCTCTGTTTCCCAAACTAAGAGTGTTGTGGAATTAAAACATCGATGTAAGCTTGCTTGCTTGGTAAAATACTGATTGCTGATTTTCTTTACTCGAATTAAGCTCTCGGGATGAGCAAAAAATACCTTGGGTTTTAGAAAATTGGTGCTAGGTATCTTGTTTCTAGAATATAAACTTCTGAGCTACAATCGCATCCACTGTCTTTGGTGCCTTTCTTTTTACTCAATTTGACATTAAGCTTGGTTTTTTAATCTTAATATGTTGTGTAGGGGTTGATTTTAAGATCAAGACGTTCACTGTTGGTGGGAAGAGGTTAAAACTTACAATATGGGATACTGGTAAGTGGGATACCTTAATTAGTTAATTGTATGTTGTGGTATCTGGTATCATTTGTGTCCTTGATAGTCACCCCTGAGCATAATGGTCCAGATCTTTAAAAATTCACCGCAAACAAACATCTAAACCTATAGTTATACTGTTAGACTGTTAGTGTATTGAATATATTGCCAACTCTTACGATAAACTAATCCCAAGAGCAGTCATAATTTATGTGTTCTCTGTTGCAGCTGGACAGGAGAGGTTCAGAACACTAACAAGTTCGTACTACAGAGGTGCCCAAGGGATAATTCTTGGTATGTTCTGTTGTTTCTGAATATTATCATTTTTCCGAAATATTTAAGCTCCTAGTTCAATGATATTAAAGGTTCATTTGTATACATACTTAAAAGAGGTCAATCATAAGACTGGTTTTATTTCTTTTCTGGATCAAACCATTTCAGATCCTTGTCGAGGCTATTCTGAGATAGAATTATGCCAATCTCTGCCAGTACTCATAAAGCTTCCTTTACCAATGTTATTGATGTACATCATCATTTTTGCCAAATTTACCATCTTAGTACTCCTTCCGTCCTTTATAGATTACCCAATATACTATTTTTTGATATCCCTATGAGTTTACCCCATATCTATATTGGTATGCTTTTCCACTTGCTCTCTCTCTCTCTACCGGGCGCCACATGTTCACACTTTTATCAACCCACGTGCAATTTTTTTTCCAAATCTTAATAAAGTGAAATTGGGGCATGGGGCCTAGTTTGATTGACGGAGGGAGTAGTTAGCTTGTTATGAAACTTGTTCTTTAGTTAGCATCATTACTTGTGGAAACAAAAGAAATGGTGGAATATTGTATCAAATTAGGCGAATCAATATAGGAAAACTTGCTTCTAATTCCTGTCCTCTATGGGCTCTATTTTCATCATTCATGGAGATGCTAACTTATTCCTCAAATATCTTATGTTCACCCATTCATATGTTGCCATAGCGAGCATGCAAAAGGTTCATAACTAAATAGCACATACTTGATAGTTGACACTCCCAGCATGAGTTGGCCGTTCAATCTAGCGTCACCAATTTCACGGGCATTACTCTACAGATTAAAACCATTTCTAATCACCACTGGCTAAATTTATGAAGGACAGTTTCAGATCCTCGATTTTGACTTTTCCTCGTACTCTTGTATTTTCCTTGTTGTCATTGTAGTGTATGATGTCACAAGAAGAGAAACTTTTACCAACTTGTCTGATGTTTGGGCTAAAGAGGTTGAGCTTTACTCTACCAATCAAGATTGTGTCAAGATGCTTGTGGGAAATAAAGTTGATAAGGTATATCTAAATTTATTTATTTATTTCAAATATTTGGGCTTGAACTGCAACATTTACATACTGTAGATTATTCGTTTTCTAATTTAAGAGCTTGAGTATTAGATTAACCCTTCCTAGCCAAGACTCGAGATTCTGAGTAATCTTATTTCAGTTAGGTAACATAATTAGATAGATCCTTCCTAGCCTTCATCCTTTAATGCTAACATAGTGGTCTCTTGTACTGTAATAAGGCTGGTATGGTAGTTGATTACGTTATTCACTTGGTGTTCATAACCATCATTAGTAATCTGAATTTTGGATAATATTTAAAAAAAAAATATAAAATAACAAGTCAAAGGAGGATTTCTGAATTTAGTGTTAAGACGGACAAAAAGGCCTTATAACTTGCATCCAAGACGGTTATTTTTGCTTTACACTCTTCTAGTATTATAATTCCTTTAAAAAGATTGATGCTTGTCAGATATAAATAACTCAATGTGCTTGATTTTAGGATTCTGAAAGAGCTGTGACTAGGGAAGAAGGGGTGGCTCTTGCACAACAGTTGGGTAGTTTATTTCTTGAATGCAGCGCCAAAACTCGAGAAAACGTGGAACAGTGCTTTGAAGAGCTTGCTTTGAAGGTAATTATGTTCTCTCCACCCTTGAGTGTTGCTGTTATATATATGTGCAAGGTGTTTTTAACTTTTGAAGCATCTTTAGGACTTCAATGTGTGTCTCAAAACTTTGGAATTATTAGTTTATGCTTACTATTATAAAATGTTAAGGTGGCCAACAATTAGGTTTCATACAAAGCAATTGCTCATTCAATTACGGTTGGTTCCACTCATATATGATATTTCATGGTTACAGATCAAGCTTGAGAATTTTAGGGGTCTAGTCATAAAATGATCTTGTTTAGTGTTTGTTTCGTTGGATACTTGAAATTATTCATCTTAGAAAGTCTCACATTCCATGGGATTTTTCCAAGACTACTCTGGTAGGGTCTTTGAAGTATACTTTTACTTTCTCTGTTTAATTGGGCAACTTCACACACCTTTTTTTTTTTGTAAGTAGAACTTCCTGAAAAGTTATAATGTTTGCATTGGAAGCTGAGCTTCTTTCTTTGCCATTTAATCTCAGAAGTTTCATTTTAAAAGATTTCAAAATAAAATATTGCTAAATCGATCGTAAAAAAAAAAAATCCATGTATACTTATTGGGCGTACATGTAGCCTTAACTAGCTCAAAAATTAGCTTGTAACACAGTAAATTGACCCTAAGGACTTGAAACGAATGTGCAATCTTGCACTTGCCTTTTGTAGCAAATTTACTGCTAATGTTGATTTTCTTGTCAAATAACTATTGAATCTGGTAACTAAAATAAAATCCATTTCAATATTTCAATCAATTATGGATAAAGAATGAACAATGATAGTTAGGGGATTGAGAGAGAAAACAACAAAACTAATGATTATTTCTAGGGAACTTTTTGGCTTTGCATAATAGTACTTTACAAAGAAACTCCGAATATAACTTTTGCTTTAATCTTCTGCGCGGAACCACCTATACAGCATTGCAATACTAGATACTCCTCGACTTAATTTCTTTCTCTTTAAAATGTTTAAACTTAAAAATGTCCAAAATAGCCTCATGTGATTCTCTGTGCAACTATATAAGCATTTCAAAGTCATAACTCCATCAAAATTGTCACTGGAAATGTCCCTGAAAAGAATCATAGTGCTAGTCTGCTAGAATGATCCAGCTTTCCGTTAAAAACTTGAAATAATTACTGAGTAGAAGAAGCTGGTCAGTGAAGGCATTTGAAGTTGTAATTTCATTTGCGATTAGTATGTCAATATAGAAAAGTAATATAAGGTGGTTTTGTTGAAAAATGTCTTTAATTAAACTTAAAAATCCGCCATGGTAATTAATCGATACCATTCAGAAAAACAATGAATAGCCTGATAGGGGGTATGTTGGGAAGAGTGTATTTTTTAATCTGATAGGGAACATTAATCTGTATTTTTTTAGTCCTCTTTCCATAATCCGCATGTTTAGACACTCGACTGCCCAACCCTTGACTTTAGCATTTTACAAAACTTATCATAGTACGAAGTATAATACTTTAAGTTGATACTTATATATATTTTGTGTACATTTTTAGTAGCTTACAAGATTATCCCTAGCTTTTGGTTTATTTTACAAGTATATTACTTGGTATTAGTAAAATACCATTTTGCGTTGAAAATGTTCATGTAAAAGTTGATCCCACGTATAGCAGTTAAATAGGCAATGTGTTGGGAGTCAAAAGACAAGAAGATGAATAACTCAAAGACCTTGTTATTCCTAGGAAATACTAGAATTGTTGTTAGTCATGTCGATGACCAAATCAAATTAACAATGTGTAAGTGGAGAGAAGGGGTGGGTGGGGTCTGTGGGGAAAGTAGGAGAGGGAAGGGAAGGAAAGGAAAAGGAAAAGGATTATATAAACCAGTATGTGTATGTTACAAATTTACATCAACTGTTTAAAACTAATGAAACTGTGATAGATTTGACTTTTAGCTGACTGTTTACAGACTATGGAAGTTCCGAGTCTCTTGGAAGAAGGGTCTACTGTGGGAAAAAGGAATATCTTGAAACAGAAACAAGATCAAAGGGCGTCTCCTCAAGGTGGTTGTTGTGCTTGATCAGTTGCAACTTCATTATTGGCGGAATGTTGCGGTCAAATTATGTACATGATAATTCATTTTTCACTTTTCACTTTTCTGCTGTTCTGGTTTGGTTTTTACTCGGCTTCTTTAGTTGTGTATCGTGATTTATAGCAGTTAAATAACAATGGTTACAAGTTTGTGTATATACCAACGAAGGTTTTTACGTATCCTTGGTAATTCAAGGGTTATATGATGGTCATTCGGTCCATGTATGATTGATCCTCATATGAAAGGAACGCACCAAACATGCTAAATATGAATATGTTTATGATAAATATGTTAGGGTAAATACTTATTTTGTCCTAATTGTACTCACCAATACCAG

mRNA sequence

GAGCAAACGTCACATTCATAACAAGTAAACAAATAGTGGTGACCAAATTCAAGACCCCGCCTCGAAAATAACGGGTTTTGAACTTGAAAACTTAAAACAAGCCGTAAGTTTCACGCGCCAACACTTCCTGAGTTCCTTCTTCTCTTCATCTTCCTCCTCAGGGTGCCAGGTGCTTGTTTCTGTATCACGACACGTCATCCAAACGGTATTCGAAGTTTCTCTCTCCTCCATTACAGAATCAGTACAGAGGAAGAAAGCCACCCAACAATTCCCTTACTTTCTCGCCGTTTTCTCTCAACTATAAAATAAGATATTCGTTTTCCCGTTAGTTAGCTCATCTTTTTGCTGGAATAAAAAGCAGCAATTACAGAGAGAAAGAAAGAAAGGAAGGAAGAAAGTGTAGGAGAGAGAAAAGATGGTTTCGAGCTCGAATAATAGTAATAATACAACTAACTATGATCTATCATTCAAGGTGTTGTTAATCGGTGATTCTGGAGTTGGCAAGAGTAGTTTGCTTGTTAGCTTCATTTCTAACGCCGTTAATCATGATGATCTTTCTCCTACTATTGGGGTTGATTTTAAGATCAAGACGTTCACTGTTGGTGGGAAGAGGTTAAAACTTACAATATGGGATACTGCTGGACAGGAGAGGTTCAGAACACTAACAAGTTCGTACTACAGAGGTGCCCAAGGGATAATTCTTGTGTATGATGTCACAAGAAGAGAAACTTTTACCAACTTGTCTGATGTTTGGGCTAAAGAGGTTGAGCTTTACTCTACCAATCAAGATTGTGTCAAGATGCTTGTGGGAAATAAAGTTGATAAGGATTCTGAAAGAGCTGTGACTAGGGAAGAAGGGGTGGCTCTTGCACAACAGTTGGGTAGTTTATTTCTTGAATGCAGCGCCAAAACTCGAGAAAACGTGGAACAGTGCTTTGAAGAGCTTGCTTTGAAGACTATGGAAGTTCCGAGTCTCTTGGAAGAAGGGTCTACTGTGGGAAAAAGGAATATCTTGAAACAGAAACAAGATCAAAGGGCGTCTCCTCAAGGTGGTTGTTGTGCTTGATCAGTTGCAACTTCATTATTGGCGGAATGTTGCGGTCAAATTATGTACATGATAATTCATTTTTCACTTTTCACTTTTCTGCTGTTCTGGTTTGGTTTTTACTCGGCTTCTTTAGTTGTGTATCGTGATTTATAGCAGTTAAATAACAATGGTTACAAGTTTGTGTATATACCAACGAAGGTTTTTACGTATCCTTGGTAATTCAAGGGTTATATGATGGTCATTCGGTCCATGTATGATTGATCCTCATATGAAAGGAACGCACCAAACATGCTAAATATGAATATGTTTATGATAAATATGTTAGGGTAAATACTTATTTTGTCCTAATTGTACTCACCAATACCAG

Coding sequence (CDS)

ATGGTTTCGAGCTCGAATAATAGTAATAATACAACTAACTATGATCTATCATTCAAGGTGTTGTTAATCGGTGATTCTGGAGTTGGCAAGAGTAGTTTGCTTGTTAGCTTCATTTCTAACGCCGTTAATCATGATGATCTTTCTCCTACTATTGGGGTTGATTTTAAGATCAAGACGTTCACTGTTGGTGGGAAGAGGTTAAAACTTACAATATGGGATACTGCTGGACAGGAGAGGTTCAGAACACTAACAAGTTCGTACTACAGAGGTGCCCAAGGGATAATTCTTGTGTATGATGTCACAAGAAGAGAAACTTTTACCAACTTGTCTGATGTTTGGGCTAAAGAGGTTGAGCTTTACTCTACCAATCAAGATTGTGTCAAGATGCTTGTGGGAAATAAAGTTGATAAGGATTCTGAAAGAGCTGTGACTAGGGAAGAAGGGGTGGCTCTTGCACAACAGTTGGGTAGTTTATTTCTTGAATGCAGCGCCAAAACTCGAGAAAACGTGGAACAGTGCTTTGAAGAGCTTGCTTTGAAGACTATGGAAGTTCCGAGTCTCTTGGAAGAAGGGTCTACTGTGGGAAAAAGGAATATCTTGAAACAGAAACAAGATCAAAGGGCGTCTCCTCAAGGTGGTTGTTGTGCTTGA

Protein sequence

MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11681	Spo11681	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11681.1	Spo11681.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11681.1.exon.1	Spo11681.1.exon.1	exon
Spo11681.1.exon.2	Spo11681.1.exon.2	exon
Spo11681.1.exon.3	Spo11681.1.exon.3	exon
Spo11681.1.exon.4	Spo11681.1.exon.4	exon
Spo11681.1.exon.5	Spo11681.1.exon.5	exon
Spo11681.1.exon.6	Spo11681.1.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11681.1.utr5p.1	Spo11681.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11681.1.CDS.1	Spo11681.1.CDS.1	CDS
Spo11681.1.CDS.2	Spo11681.1.CDS.2	CDS
Spo11681.1.CDS.3	Spo11681.1.CDS.3	CDS
Spo11681.1.CDS.4	Spo11681.1.CDS.4	CDS
Spo11681.1.CDS.5	Spo11681.1.CDS.5	CDS
Spo11681.1.CDS.6	Spo11681.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11681.1.utr3p.1	Spo11681.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo11681.1 vs. NCBI nr
Match: gi|902210112|gb|KNA16348.1| (hypothetical protein SOVF_089760 [Spinacia oleracea])

HSP 1 Score: 424.5 bits (1090), Expect = 1.100e-115
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


		  
Query: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60
           MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF
Sbjct: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60

Query: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120
           TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY
Sbjct: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120

Query: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180
           STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK
Sbjct: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180

Query: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA
Sbjct: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 216

[Close]

BLAST of Spo11681.1 vs. NCBI nr
Match: gi|731368753|ref|XP_010696319.1| (PREDICTED: ras-related protein RABC2a [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 386.7 bits (992), Expect = 2.600e-104
Identity = 200/216 (92.59%), Postives = 205/216 (94.91%), Query Frame = 1


		  
Query: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60
           M SSSNN N ++NYDLSFKVLLIGDSGVGKSSLLVSFIS A+  DDLSPTIGVDFKIK  
Sbjct: 1   MSSSSNNQNTSSNYDLSFKVLLIGDSGVGKSSLLVSFISKAL--DDLSPTIGVDFKIKML 60

Query: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120
           TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY
Sbjct: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120

Query: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180
           STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK
Sbjct: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180

Query: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
            M+VPSLLEEGSTVGKRNILKQKQDQRA+  GGCCA
Sbjct: 181 IMDVPSLLEEGSTVGKRNILKQKQDQRAAAPGGCCA 214

[Close]

BLAST of Spo11681.1 vs. NCBI nr
Match: gi|698493917|ref|XP_009793192.1| (PREDICTED: ras-related protein RABC2a-like [Nicotiana sylvestris])

HSP 1 Score: 361.7 bits (927), Expect = 9.000e-97
Identity = 183/212 (86.32%), Postives = 196/212 (92.45%), Query Frame = 1


		  
Query: 5   SNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGG 64
           +    + ++YDLSFK+LLIGDSGVGKSSLLVSFISNAV  DDL+PTIGVDFKIKT TVGG
Sbjct: 2   ATTGQSNSSYDLSFKILLIGDSGVGKSSLLVSFISNAV--DDLAPTIGVDFKIKTLTVGG 61

Query: 65  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 124
           KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYS NQ
Sbjct: 62  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSNNQ 121

Query: 125 DCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEV 184
           DCVKMLVGNKVDK+SERAVTREEG+ALA++LGSLFLECSAKTRENV+ CFEELALK MEV
Sbjct: 122 DCVKMLVGNKVDKESERAVTREEGIALAKELGSLFLECSAKTRENVQHCFEELALKIMEV 181

Query: 185 PSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           PSLLEEGSTVGKRNILKQKQ+Q     GGCC+
Sbjct: 182 PSLLEEGSTVGKRNILKQKQEQNTQQGGGCCS 211

[Close]

BLAST of Spo11681.1 vs. NCBI nr
Match: gi|697133350|ref|XP_009620727.1| (PREDICTED: ras-related protein RABC2a-like [Nicotiana tomentosiformis])

HSP 1 Score: 360.9 bits (925), Expect = 1.500e-96
Identity = 183/212 (86.32%), Postives = 196/212 (92.45%), Query Frame = 1


		  
Query: 5   SNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGG 64
           +    + ++YDLSFK+LLIGDSGVGKSSLLVSFISNAV  DDL+PTIGVDFKIKT TVGG
Sbjct: 2   ATTGQSNSSYDLSFKILLIGDSGVGKSSLLVSFISNAV--DDLAPTIGVDFKIKTLTVGG 61

Query: 65  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 124
           KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYS NQ
Sbjct: 62  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSNNQ 121

Query: 125 DCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEV 184
           DCVKMLVGNKVDK+SERAVTREEG+ALA++LGSLFLECSAKTRENV+ CFEELALK MEV
Sbjct: 122 DCVKMLVGNKVDKESERAVTREEGIALAKELGSLFLECSAKTRENVQHCFEELALKIMEV 181

Query: 185 PSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           PSLLEEGSTVGKRNILKQKQ+Q     GGCC+
Sbjct: 182 PSLLEEGSTVGKRNILKQKQEQNTQLGGGCCS 211

[Close]

BLAST of Spo11681.1 vs. NCBI nr
Match: gi|823220572|ref|XP_012442986.1| (PREDICTED: ras-related protein RABC2a [Gossypium raimondii])

HSP 1 Score: 357.8 bits (917), Expect = 1.300e-95
Identity = 180/212 (84.91%), Postives = 199/212 (93.87%), Query Frame = 1


		  
Query: 5   SNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGG 64
           S++  ++ +YDLSFK+LLIGDSGVGKSSLLVSFIS +   +DL+PTIGVDFKIK  TVGG
Sbjct: 3   SSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISTSA--EDLAPTIGVDFKIKLLTVGG 62

Query: 65  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 124
           KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ
Sbjct: 63  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 122

Query: 125 DCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEV 184
           DCVKMLVGNKVD+DSERAVTREEGVALA++LGS+FLECSAKTRENVEQCFEELALK ME+
Sbjct: 123 DCVKMLVGNKVDRDSERAVTREEGVALAKELGSMFLECSAKTRENVEQCFEELALKIMEI 182

Query: 185 PSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           PSLLEEGS+VGKRN+LKQK + +ASP GGCC+
Sbjct: 183 PSLLEEGSSVGKRNMLKQKPEYQASPGGGCCS 212

[Close]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA09_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_089760 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 7.900e-116
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


		  
Query: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60
           MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF
Sbjct: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60

Query: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120
           TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY
Sbjct: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120

Query: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180
           STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK
Sbjct: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180

Query: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA
Sbjct: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 216

[Close]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAU6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179280 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.800e-104
Identity = 200/216 (92.59%), Postives = 205/216 (94.91%), Query Frame = 1


		  
Query: 1   MVSSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTF 60
           M SSSNN N ++NYDLSFKVLLIGDSGVGKSSLLVSFIS A+  DDLSPTIGVDFKIK  
Sbjct: 1   MSSSSNNQNTSSNYDLSFKVLLIGDSGVGKSSLLVSFISKAL--DDLSPTIGVDFKIKML 60

Query: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120
           TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY
Sbjct: 61  TVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELY 120

Query: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180
           STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK
Sbjct: 121 STNQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALK 180

Query: 181 TMEVPSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
            M+VPSLLEEGSTVGKRNILKQKQDQRA+  GGCCA
Sbjct: 181 IMDVPSLLEEGSTVGKRNILKQKQDQRAAAPGGCCA 214

[Close]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G412800 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 9.000e-96
Identity = 180/212 (84.91%), Postives = 199/212 (93.87%), Query Frame = 1


		  
Query: 5   SNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGG 64
           S++  ++ +YDLSFK+LLIGDSGVGKSSLLVSFIS +   +DL+PTIGVDFKIK  TVGG
Sbjct: 3   SSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISTSA--EDLAPTIGVDFKIKLLTVGG 62

Query: 65  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 124
           KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ
Sbjct: 63  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 122

Query: 125 DCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEV 184
           DCVKMLVGNKVD+DSERAVTREEGVALA++LGS+FLECSAKTRENVEQCFEELALK ME+
Sbjct: 123 DCVKMLVGNKVDRDSERAVTREEGVALAKELGSMFLECSAKTRENVEQCFEELALKIMEI 182

Query: 185 PSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           PSLLEEGS+VGKRN+LKQK + +ASP GGCC+
Sbjct: 183 PSLLEEGSSVGKRNMLKQKPEYQASPGGGCCS 212

[Close]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PTQ5_GOSAR (Ras-related RABC2a-like protein OS=Gossypium arboreum GN=F383_05546 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.000e-94
Identity = 178/212 (83.96%), Postives = 199/212 (93.87%), Query Frame = 1


		  
Query: 5   SNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGG 64
           S++  ++ +YDLSFK+LLIGDSGVGKSSLLVSFIS +   +DL+PTIGVDFKIK  +VGG
Sbjct: 3   SSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISASA--EDLAPTIGVDFKIKLLSVGG 62

Query: 65  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 124
           KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVEL+STNQ
Sbjct: 63  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELFSTNQ 122

Query: 125 DCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEV 184
           DCVKMLVGNKVD+DSERAVTREEGVALA++LGS+FLECSAKTRENVEQCFEELALK ME+
Sbjct: 123 DCVKMLVGNKVDRDSERAVTREEGVALAKELGSMFLECSAKTRENVEQCFEELALKIMEI 182

Query: 185 PSLLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           PSLLEEGS+VGKRN+LKQK + +ASP GGCC+
Sbjct: 183 PSLLEEGSSVGKRNMLKQKSEYQASPGGGCCS 212

[Close]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Match: K4CQN4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.900e-94
Identity = 180/215 (83.72%), Postives = 197/215 (91.63%), Query Frame = 1


		  
Query: 3   SSSNNSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTV 62
           S++    + ++YDLSFK+LLIGDSGVGKSSLLVSFISNAV  DDL+PTIGVDFKIKT TV
Sbjct: 4   STATTGQSNSSYDLSFKILLIGDSGVGKSSLLVSFISNAV--DDLAPTIGVDFKIKTLTV 63

Query: 63  GGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYST 122
            GK+LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYS 
Sbjct: 64  SGKKLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSN 123

Query: 123 NQDCVKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTM 182
           NQDCVKMLVGNKVD++SERAVTREEG+ALA++LG LFLECSAKTRENV+ CFEELALK M
Sbjct: 124 NQDCVKMLVGNKVDRESERAVTREEGIALAKELGGLFLECSAKTRENVQNCFEELALKIM 183

Query: 183 EVPSLLEEGSTVGKRNILKQKQDQRASP-QGGCCA 217
           EVPSLLEEGSTVGKRNILKQKQ+Q+     GGCC+
Sbjct: 184 EVPSLLEEGSTVGKRNILKQKQEQQTQQGGGGCCS 216

[Close]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Match: RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.800e-90
Identity = 165/210 (78.57%), Postives = 190/210 (90.48%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+  + YDLSFK+LLIGDSGVGKSSLLVSFIS++V  +DL+PTIGVDFKIK  TVGGKR
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQLTVGGKR 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE+ELYSTNQ+C
Sbjct: 63  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           V+MLVGNKVD++SER V+REEG+ALA++L  +FLECSA+TR+NVEQCFEELALK MEVPS
Sbjct: 123 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           LLEEGS+  KRNILKQK + + + Q GCC+
Sbjct: 183 LLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

[Close]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Match: RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.400e-80
Identity = 149/209 (71.29%), Postives = 172/209 (82.30%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+    +D  FKVLLIGDSGVGKSSLL+SF SN    DDLSPTIGVDFK+K  T+G K+
Sbjct: 3   SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTF--DDLSPTIGVDFKVKYLTIGEKK 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNLSD+WAKE++LYSTNQDC
Sbjct: 63  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           +KMLVGNKVDK+SERAV+++EG+  A++ G LFLECSAKTR NVEQCFEEL LK +E PS
Sbjct: 123 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCC 216
           L  EGS+ GK+NI KQ   Q  S     C
Sbjct: 183 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Match: RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.200e-79
Identity = 153/210 (72.86%), Postives = 180/210 (85.71%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+  + YDLSFK+LLIGDSGVGKSSLL+SFIS++V  +DL+PTIGVDFKIK   V GKR
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSV--EDLAPTIGVDFKIKQMKVRGKR 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN DC
Sbjct: 63  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           +KMLVGNKVD++SER V+REEG+ALA+ L  LF ECSA+TRENV  CFEELALK MEVPS
Sbjct: 123 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           LLEEGS     + +K+K D RA  QG CC+
Sbjct: 183 LLEEGS-----SSVKRKPDYRAH-QGRCCS 204

[Close]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.500e-51
Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 1


		  
Query: 17  SFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKRLKLTIWDTAG 76
           + K+L+IG+SGVGKSSLL+ F  +  +  +L+ TIGVDFK+KT  + G R KL IWDTAG
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTIAIDGNRAKLAIWDTAG 67

Query: 77  QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDCVKMLVGNKVD 136
           QERFRTLT SYYRGAQG+ILVYDVT+R+TFT L + W  E+E Y T  D VKMLVGNK+D
Sbjct: 68  QERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKID 127

Query: 137 KDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPSLLEEGSTVGK 196
           KD+ R V R EG+  A++   LF+E SAKTR+ V+  FEEL  K ++ P L E  S++  
Sbjct: 128 KDN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE--SSIQN 187

Query: 197 RNI-LKQKQDQRASPQGGCCA 217
             + L   + QR    GG C+
Sbjct: 188 HGVQLSDNEPQRQGACGGYCS 203

[Close]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.500e-51
Identity = 104/183 (56.83%), Postives = 131/183 (71.58%), Query Frame = 1


		  
Query: 13  NYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKRLKLTIW 72
           ++D +FKVLL+GDSGVGKS +L  F S  +  +  + TIGVDFK+K  T  GKR KLTIW
Sbjct: 5   SHDYTFKVLLVGDSGVGKSCILTRFTSG-IFEESTTSTIGVDFKVKYLTADGKRCKLTIW 64

Query: 73  DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDCVKMLVG 132
           DTAGQERFRTLTSSYYRGAQGII VYDVTRR+TF +L   W +E ++YST +  +KM+V 
Sbjct: 65  DTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVA 124

Query: 133 NKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPSLLEEGS 192
           NKVD  ++R V+ EEG   A++ G LF+E SA+    V Q FEEL LK ++ P LLE  +
Sbjct: 125 NKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTA 184

Query: 193 TVG 196
             G
Sbjct: 185 VGG 186

[Close]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Match: AT5G03530.1 (RAB GTPase homolog C2A)

HSP 1 Score: 332.8 bits (852), Expect = 1.600e-91
Identity = 165/210 (78.57%), Postives = 190/210 (90.48%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+  + YDLSFK+LLIGDSGVGKSSLLVSFIS++V  +DL+PTIGVDFKIK  TVGGKR
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDLAPTIGVDFKIKQLTVGGKR 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNL DVW KE+ELYSTNQ+C
Sbjct: 63  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           V+MLVGNKVD++SER V+REEG+ALA++L  +FLECSA+TR+NVEQCFEELALK MEVPS
Sbjct: 123 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           LLEEGS+  KRNILKQK + + + Q GCC+
Sbjct: 183 LLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

[Close]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18)

HSP 1 Score: 299.3 bits (765), Expect = 1.900e-81
Identity = 149/209 (71.29%), Postives = 172/209 (82.30%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+    +D  FKVLLIGDSGVGKSSLL+SF SN    DDLSPTIGVDFK+K  T+G K+
Sbjct: 3   SSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTF--DDLSPTIGVDFKVKYLTIGEKK 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNLSD+WAKE++LYSTNQDC
Sbjct: 63  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           +KMLVGNKVDK+SERAV+++EG+  A++ G LFLECSAKTR NVEQCFEEL LK +E PS
Sbjct: 123 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCC 216
           L  EGS+ GK+NI KQ   Q  S     C
Sbjct: 183 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Match: AT3G09910.1 (RAB GTPase homolog C2B)

HSP 1 Score: 296.6 bits (758), Expect = 1.300e-80
Identity = 153/210 (72.86%), Postives = 180/210 (85.71%), Query Frame = 1


		  
Query: 7   NSNNTTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKR 66
           +S+  + YDLSFK+LLIGDSGVGKSSLL+SFIS++V  +DL+PTIGVDFKIK   V GKR
Sbjct: 3   SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSV--EDLAPTIGVDFKIKQMKVRGKR 62

Query: 67  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDC 126
           LKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN DC
Sbjct: 63  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 122

Query: 127 VKMLVGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPS 186
           +KMLVGNKVD++SER V+REEG+ALA+ L  LF ECSA+TRENV  CFEELALK MEVPS
Sbjct: 123 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 182

Query: 187 LLEEGSTVGKRNILKQKQDQRASPQGGCCA 217
           LLEEGS     + +K+K D RA  QG CC+
Sbjct: 183 LLEEGS-----SSVKRKPDYRAH-QGRCCS 204

[Close]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Match: AT4G17530.1 (RAB GTPase homolog 1C)

HSP 1 Score: 171.0 bits (432), Expect = 7.900e-43
Identity = 97/203 (47.78%), Postives = 128/203 (63.05%), Query Frame = 1


		  
Query: 14  YDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKRLKLTIWD 73
           YD  FK+LLIGDSGVGKS LL+ F  ++     +S TIGVDFKI+T    GK +KL IWD
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS-TIGVDFKIRTVEQDGKTIKLQIWD 64

Query: 74  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDCVKMLVGN 133
           TAGQERFRT+TSSYYRGA GII+ YDVT  E+F N+   W  E++ Y+ +++  K+LVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQ-WLNEIDRYA-SENVNKLLVGN 124

Query: 134 KVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPSLLEEGST 193
           K D  S++ V+ E   A A +LG  FLE SAK   NVE+ F  +   T  + + +     
Sbjct: 125 KCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAM---TAAIKTRMASQPA 184

Query: 194 VGKRNILKQKQDQRASPQGGCCA 217
            G +    Q + Q  + Q GCC+
Sbjct: 185 GGSKPPTVQIRGQPVNQQSGCCS 201

[Close]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Match: AT3G11730.1 (Ras-related small GTP-binding family protein)

HSP 1 Score: 170.2 bits (430), Expect = 1.400e-42
Identity = 97/205 (47.32%), Postives = 123/205 (60.00%), Query Frame = 1


		  
Query: 11  TTNYDLSFKVLLIGDSGVGKSSLLVSFISNAVNHDDLSPTIGVDFKIKTFTVGGKRLKLT 70
           +  YD  FK+LLIGDS VGKS LL+ F  +A     +S TIGVDFKI+T    GK +KL 
Sbjct: 2   SNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYIS-TIGVDFKIRTIEQDGKTIKLQ 61

Query: 71  IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQDCVKML 130
           IWDTAGQERFRT+TSSYYRGA GII+VYD T  E+F N+   W  E++ Y+ N+   K+L
Sbjct: 62  IWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRYA-NESVCKLL 121

Query: 131 VGNKVDKDSERAVTREEGVALAQQLGSLFLECSAKTRENVEQCFEELALKTMEVPSLLEE 190
           +GNK D    + V+ E G ALA +LG  FLE SAK   NVEQ F  +A +  +       
Sbjct: 122 IGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTN 181

Query: 191 GSTVGKRNILKQKQDQRASPQGGCC 216
            +       ++ K        GGCC
Sbjct: 182 ANKTSGPGTVQMKGQPIQQNNGGCC 203

The following BLAST results are available for this feature:

BLAST of Spo11681.1 vs. NCBI nr
BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
BLAST of Spo11681.1 vs. TAIR (Arabidopsis)

BLAST of Spo11681.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902210112\|gb\|KNA16348.1\|	1.1e-115	100.	hypothetical protein SOVF_0897...	[more]
gi\|731368753\|ref\|XP_010696319.1\|	2.6e-104	92.5	PREDICTED: ras-related protein...	[more]
gi\|698493917\|ref\|XP_009793192.1\|	9.0e-97	86.3	PREDICTED: ras-related protein...	[more]
gi\|697133350\|ref\|XP_009620727.1\|	1.5e-96	86.3	PREDICTED: ras-related protein...	[more]
gi\|823220572\|ref\|XP_012442986.1\|	1.3e-95	84.9	PREDICTED: ras-related protein...	[more]

BLAST of Spo11681.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RA09_SPIOL	7.9e-116	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BAU6_BETVU	1.8e-104	92.5	Uncharacterized protein OS=Bet...	[more]
A0A0D2SGR0_GOSRA	9.0e-96	84.9	Uncharacterized protein OS=Gos...	[more]
A0A0B0PTQ5_GOSAR	1.0e-94	83.9	Ras-related RABC2a-like protei...	[more]
K4CQN4_SOLLC	2.9e-94	83.7	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo11681.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RAC2A_ARATH	2.8e-90	78.5	Ras-related protein RABC2a OS=...	[more]
RABC1_ARATH	3.4e-80	71.2	Ras-related protein RABC1 OS=A...	[more]
RAC2B_ARATH	2.2e-79	72.8	Ras-related protein RABC2b OS=...	[more]
RB18B_DANRE	1.5e-51	54.2	Ras-related protein Rab-18-B O...	[more]
YPTV3_VOLCA	7.5e-51	56.8	GTP-binding protein yptV3 OS=V...	[more]

BLAST of Spo11681.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G03530.1	1.6e-91	78.5	RAB GTPase homolog C2A	[more]
AT1G43890.1	1.9e-81	71.2	RAB GTPASE HOMOLOG B18	[more]
AT3G09910.1	1.3e-80	72.8	RAB GTPase homolog C2B	[more]
AT4G17530.1	7.9e-43	47.7	RAB GTPase homolog 1C	[more]
AT3G11730.1	1.4e-42	47.3	Ras-related small GTP-binding ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 19..180 score: 1.7
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 18..176 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 10..215 score: 5.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..200 score: 5.57
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 60..82 score: 1.4E-35coord: 159..181 score: 1.4E-35coord: 42..58 score: 1.4E-35coord: 18..39 score: 1.4E-35coord: 124..137 score: 1.4
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 10..215 score: 1.0E
None	No IPR available	PANTHER	PTHR24073:SF536	RAS-RELATED PROTEIN RABC2A	coord: 10..215 score: 1.0E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 15..184 score: 4.4
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 20..185 score: 9.9
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 18..184 score: 8.6
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 23..216 score: 1.
None	No IPR available	PROFILE	PS51419	RAB	coord: 13..216 score: 32

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity