Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGTCAAACCGTTGCGAGTATTCTGGAACGGAGGGAGTACTTTGTTTCCATGCTTTTTCATTACTTCTACACACACCGACATCTACACTCACACTACACTCACACTACACTCACGGCTCACCCTCCATATATGATATATATAACACATACATGCGCGGCAATCTTTTTAGGAACGGAGGAGTAATAAGTTAAGAATCAATCAATCTTCATTTCTTGTTTTTTATATACATATATATACACATACACATACACATACACATACACATACGAACAATAATCTTTGAATTCATTTTGCTGGTTTAAAAATGAAAATGTTGTTGATAATTTTGAGTCTTTTTTACATGGTTTCATGTATCAATAGTATTAGTTTATGGCCACCATCTCCTGGCTACTATCCTAGCAAGAAGTTTAGGTCTGTGAGTTTCTGGAGAGGTTATAGAAATTTATGGGGTCCCCAACATCAAAAGCTTTATCAAAATGCTTTGACTATTTGGCTTGATCGAACTTCAGGTACGTAGTTACTTTCTCTGTATCCTTAACTCCCTAACAATAATGTAATTTTACTATTGATGTTACGTTTTAATCTCCAACTAATTAATTAGTATGTATTTTCTAAATATATTCTAATCTCTCTGTTATATTTTTGTAATTATAGGAAGCGGGTTTAAGTCGACTCGCCCGTTTAGATCGGGTTATTTTGGTACATCAATCAAGCTTCAACAAGGGTACACTGCAGGAGTAATAACAACATTCTATGTAAGATTATTCACCTTAATTAGTTAATGAAACTTTTACTTGCTAGTTACACTTCCGTATGTTATTGTGACTCTAAAGTTAAAACGGCTACCCATCTCTTGTAGGTGAGTCGTAGTTGTAGACTGCATTACTGATTGCTTAGTGTTAGATCGAAATAATTCTTTAAACATCACAATCTAAGTGGCTACTTTATCAGAAACTAAAATTATACGTAGTATATACTTTATCAACATAGAGTTGGACCAAGTGGTAAGCAGCTTGACGCTTAAGGGAGGTCTCGAGTTCGAGCCTCGCCGTATGCATAAACTCTTGTTGGGAGACTCACCCACCATAAACAAGGTGTGCGACACGGGTCGGATCCGGATGTAGTCGAAGTTAAGCTCCGGTGAACCGGGTGAGCTATGCGTAAAAAAAAGTATATATACTTTGGTTCATTTTGTTTGATTGATATTTGGAATTTAGCCAATTCACGTAATTCAGACATACAAGTGTCCTATGCAAAATGCAAACTCCATAATTTAGCAAAGTTTATTAATTGAGGTGTTTGGTCCATTCAGAACACGTACAAATTAGTTCAAGATTCCATCCATATATATGTAGTACTTCTATATATTATAGGCATACCAACCACCCATTACAAAATTTATTCTTATATCCCACAATAATTCATCCACTAAAACTTAATCATAAGCCGTTCCACGACAAATTAAGAAAACATACAAAGAATTTTTGGTTTCCAATTTTATAATTATTCTTGCTGTCGGTTTCTTTTTTCATTTTTATTTTTTTAGAATAGAATTTTTAGAAATTTCCTTTAGTACTAGTATATATAAAGTAGCATTTCGTAACTTTTAGATTTAATATATAAGTTGTACTTTTTTGTACCAATTAGACATCCCCTCAAAAAAAGAAGCACCATTTTAGACATAAGATTAAACTTACATTACGCTTATATACCATTTTAGTTAATACGGAGTATCATAATTTTATGAGCTTTGTTAGTACTACTTGATTGATCTACACACTAACAACATTTAAGTTGCTGCGTTTTATATAAATCAATTAGATTCCGTGCATGTACAAATATTCAAGTAGGACTAATAAAACTAATTTTGTGTATACATATTAAGTCCGTGTTTACGCACAACTGTAATACATGTTTAACCTAGCGCGTATGTAGAACGCAGCAACATAAATAGTGTTTGTGTGTTCAAACAAGCCGACATATGATGGTGCATGAACTAGAACTTTATAAGTTTATATACTCTTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCTCTAAGCCCACAGCCCCAACACGAGGCACGGCCTACTGCCCTCGGTCATCCGGAGCCTTGTAGGCGTTGTAGCCACTTTGTAGCCNTAAAAAAAAAAAAAAAAAAAAAAGGAACTTTATATACTCTTAAATGCACAAAAAAATATTCTTGATCTAATGGCTCAAATTGGTTCACCCAAAAGAAAAAAAAATAGGAAAATGGATAATTACAATAATTATACTACAATTGGCATATTTATTTCTTCAATTCCTTAAGCTAGTGAAAATACTACTACGTAGTTGCTAGTGTGACCCAAATAGGGAATAACATCAAAAACTTTTGTGTGCCTCCGATTTACCGTATTATTTTATTGTACATCCAATATAGCGTGTAAATCATGAAAAATAGAATTTACTTTAGGTAAAAGTGGCTCAGGTCAAAGATAAAAGTGAACTCGGCCAAAGATATAAGTGAGTTTACTTGATAACTGAAGTTAACTTACTCAAGGAAAAATATAATACTAACCAGTGAAAAATGTAACCCTAATAAAAAACACTGAAGTGACTCTTATCAAAATGATATGCTTGTTACAAATTATAACTAGGACCAATACAAGATCAACAATGAGAATACACCAATACATAAGTGTATTATGGGTAGTAGGCTAAGTGGGGCTTGAACCCACACCATGTACAATTTTGACATTGTTGTACCGCTTGAGCTAATAGCCTTGAAATAAGGTAATTTATAACTTCAAATAAAAAAAACTAATAACATCAATAAGGGTAACTAAAAGAACAGAATAGGTGCTAAAAGAAAAAAAATATATATAGACTATTGGACTATAAAAACAAGAAAAGAAGGACAAAGAAAGTTTTGAACAAATGAATGAAATGAGGAAAGACTCCTCCAGAGAGGAAAGAGAGAAAAAAATTAAAAAAAATGTTGATGTGAACACGCGGCATAAATTTTGTTGGGCAAATAACCTTCATCTTTTGGGCTGCCACACAATATTACCTTAGATTGTTTTTTCTGAAAAGTTTGTGGAATCACATCTATTCAATTCCTAGATAAGATTGGTATAGTAATCCGACTATTCACCAATATCAATTATCTCGGCTTTAATACTATTATTTGAATTAGTAATGTGACAACTAGCGAAATTATTGTATAAAATTTGTAATTAGTGATTACGTGTTGGCATTGATTCGCAGCTTTCGAACAACGAAGCTCACCCGGGGCACCATGATGAAGTAGACATGGAATTTCTAGGGACAACATTTGGAAAACCATATGTATTACAAACAAATGTTTACATAAGGGGAAGTGGAGATGGCAATATTATTGGAAGGGAGATGAAATTTCATCTTTGGTTCGATCCAACTAAAGGATTTCATCATTATGCTATTTTCTGGAGTCCTAAAGAGATCGTGTGAGTTTACTTTTCTACCCTTACTATTTCAACGCCCCTTCTAAAAAAAGTACAAATTTTGCATTCAATTGAATTATTATGGACTCAATTATTAATTTTTTAAATATAATTTATAATTTATTTTTCCTGATTTTTGCAATCATCTCCATCCTTTTGTGTATACGTTGTGGGGGTTGAGATCTAGCTGGGATTTTGGGGGCGGCTACCCTTAATTGGAGTTAGTTTGGAGTAATTATATTTTTACCATTTCTGTTTTACTATTGTACAATTATACGTACACCATGATTAGTCATTTTTCGGGAATATAATTGAAATTTTATTATATAACGGTGAAAAGACAAAAAGAAAACCGTAAATAAAAACTCTTATACTTGAGAGAAGTGGTATAAGTAGAACGCTGTAAATATACACTAACTAAATGTAGTACTCTGTATGTAAAAATAAACTGGTAAAGTTACTAGTTTATCGTACACTTTATAATTAATAAATGTTAACTTTTCTAGAAGCAATTTATACGAAGTATTTTTACGGAGTATATGACAAAAATAGTACTCCGTAGTGAAATAATATAATGATCAATTTTGACCAATAGTAAACAATTGTAACGATTAAAAGTAGGTATTTATCTATTAAAAATTGATTTAATATAATAAGCAATGTACGTATAATAAAATTATATGATCCATTAGATTACTTAGTTTAGTGTTTTGCTATTATTGGACACAGATTTTTGGTAGATGATATTCCTATAAGAAGATACCAAAGAAAAAGTGATGCTACATTTCCACTAAGGCCAATGTGGGCGTATGGATCAATATGGGACGCCTCATCGTGGGCAACTGAAGATGGTAAATACAAAGCAGATTATAGGTACCAACCATTTGTGGGTCAATTTACGAACTTCAAAGCCGGCGGTTGTTCTGCCTACTCTTCCCTCTCGTGTCGTCCAGTTTCCGTTTCTCCTTATCGATCCGGCGGCCTTACTCGAAAGCAATATTCCGTCATGAGATGGGTTCAAAGACATTACATGTTTTATGACTATTGCAAGGACCATAAAACAAACCCTTCACTTACTCCCGAATGTTGGTTACGGGGTCGTCGTTGA AAAAGTCAAACCGTTGCGAGTATTCTGGAACGGAGGGAGTACTTTGTTTCCATGCTTTTTCATTACTTCTACACACACCGACATCTACACTCACACTACACTCACACTACACTCACGGCTCACCCTCCATATATGATATATATAACACATACATGCGCGGCAATCTTTTTAGGAACGGAGGAGTAATAAGTTAAGAATCAATCAATCTTCATTTCTTGTTTTTTATATACATATATATACACATACACATACACATACACATACACATACGAACAATAATCTTTGAATTCATTTTGCTGGTTTAAAAATGAAAATGTTGTTGATAATTTTGAGTCTTTTTTACATGGTTTCATGTATCAATAGTATTAGTTTATGGCCACCATCTCCTGGCTACTATCCTAGCAAGAAGTTTAGGTCTGTGAGTTTCTGGAGAGGTTATAGAAATTTATGGGGTCCCCAACATCAAAAGCTTTATCAAAATGCTTTGACTATTTGGCTTGATCGAACTTCAGGAAGCGGGTTTAAGTCGACTCGCCCGTTTAGATCGGGTTATTTTGGTACATCAATCAAGCTTCAACAAGGGTACACTGCAGGAGTAATAACAACATTCTATCTTTCGAACAACGAAGCTCACCCGGGGCACCATGATGAAGTAGACATGGAATTTCTAGGGACAACATTTGGAAAACCATATGTATTACAAACAAATGTTTACATAAGGGGAAGTGGAGATGGCAATATTATTGGAAGGGAGATGAAATTTCATCTTTGGTTCGATCCAACTAAAGGATTTCATCATTATGCTATTTTCTGGAGTCCTAAAGAGATCGTATTTTTGGTAGATGATATTCCTATAAGAAGATACCAAAGAAAAAGTGATGCTACATTTCCACTAAGGCCAATGTGGGCGTATGGATCAATATGGGACGCCTCATCGTGGGCAACTGAAGATGGTAAATACAAAGCAGATTATAGGTACCAACCATTTGTGGGTCAATTTACGAACTTCAAAGCCGGCGGTTGTTCTGCCTACTCTTCCCTCTCGTGTCGTCCAGTTTCCGTTTCTCCTTATCGATCCGGCGGCCTTACTCGAAAGCAATATTCCGTCATGAGATGGGTTCAAAGACATTACATGTTTTATGACTATTGCAAGGACCATAAAACAAACCCTTCACTTACTCCCGAATGTTGGTTACGGGGTCGTCGTTGA ATGAAAATGTTGTTGATAATTTTGAGTCTTTTTTACATGGTTTCATGTATCAATAGTATTAGTTTATGGCCACCATCTCCTGGCTACTATCCTAGCAAGAAGTTTAGGTCTGTGAGTTTCTGGAGAGGTTATAGAAATTTATGGGGTCCCCAACATCAAAAGCTTTATCAAAATGCTTTGACTATTTGGCTTGATCGAACTTCAGGAAGCGGGTTTAAGTCGACTCGCCCGTTTAGATCGGGTTATTTTGGTACATCAATCAAGCTTCAACAAGGGTACACTGCAGGAGTAATAACAACATTCTATCTTTCGAACAACGAAGCTCACCCGGGGCACCATGATGAAGTAGACATGGAATTTCTAGGGACAACATTTGGAAAACCATATGTATTACAAACAAATGTTTACATAAGGGGAAGTGGAGATGGCAATATTATTGGAAGGGAGATGAAATTTCATCTTTGGTTCGATCCAACTAAAGGATTTCATCATTATGCTATTTTCTGGAGTCCTAAAGAGATCGTATTTTTGGTAGATGATATTCCTATAAGAAGATACCAAAGAAAAAGTGATGCTACATTTCCACTAAGGCCAATGTGGGCGTATGGATCAATATGGGACGCCTCATCGTGGGCAACTGAAGATGGTAAATACAAAGCAGATTATAGGTACCAACCATTTGTGGGTCAATTTACGAACTTCAAAGCCGGCGGTTGTTCTGCCTACTCTTCCCTCTCGTGTCGTCCAGTTTCCGTTTCTCCTTATCGATCCGGCGGCCTTACTCGAAAGCAATATTCCGTCATGAGATGGGTTCAAAGACATTACATGTTTTATGACTATTGCAAGGACCATAAAACAAACCCTTCACTTACTCCCGAATGTTGGTTACGGGGTCGTCGTTGA MKMLLIILSLFYMVSCINSISLWPPSPGYYPSKKFRSVSFWRGYRNLWGPQHQKLYQNALTIWLDRTSGSGFKSTRPFRSGYFGTSIKLQQGYTAGVITTFYLSNNEAHPGHHDEVDMEFLGTTFGKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTKGFHHYAIFWSPKEIVFLVDDIPIRRYQRKSDATFPLRPMWAYGSIWDASSWATEDGKYKADYRYQPFVGQFTNFKAGGCSAYSSLSCRPVSVSPYRSGGLTRKQYSVMRWVQRHYMFYDYCKDHKTNPSLTPECWLRGRR Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo10466.1 vs. NCBI nr
Match: gi|902204783|gb|KNA14975.1| (hypothetical protein SOVF_102160 [Spinacia oleracea]) HSP 1 Score: 632.5 bits (1630), Expect = 3.800e-178 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
BLAST of Spo10466.1 vs. NCBI nr
Match: gi|902238817|gb|KNA25336.1| (hypothetical protein SOVF_007540 [Spinacia oleracea]) HSP 1 Score: 597.0 bits (1538), Expect = 1.800e-167 Identity = 273/281 (97.15%), Postives = 276/281 (98.22%), Query Frame = 1
BLAST of Spo10466.1 vs. NCBI nr
Match: gi|731368695|ref|XP_010696289.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 549.7 bits (1415), Expect = 3.200e-153 Identity = 250/295 (84.75%), Postives = 273/295 (92.54%), Query Frame = 1
BLAST of Spo10466.1 vs. NCBI nr
Match: gi|595806115|ref|XP_007202396.1| (hypothetical protein PRUPE_ppa009437mg [Prunus persica]) HSP 1 Score: 514.2 bits (1323), Expect = 1.500e-142 Identity = 235/295 (79.66%), Postives = 258/295 (87.46%), Query Frame = 1
BLAST of Spo10466.1 vs. NCBI nr
Match: gi|645272432|ref|XP_008241393.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Prunus mume]) HSP 1 Score: 512.7 bits (1319), Expect = 4.400e-142 Identity = 232/293 (79.18%), Postives = 257/293 (87.71%), Query Frame = 1
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R639_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_102160 PE=3 SV=1) HSP 1 Score: 632.5 bits (1630), Expect = 2.600e-178 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0P9_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_007540 PE=3 SV=1) HSP 1 Score: 597.0 bits (1538), Expect = 1.200e-167 Identity = 273/281 (97.15%), Postives = 276/281 (98.22%), Query Frame = 1
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7S2_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178970 PE=3 SV=1) HSP 1 Score: 549.7 bits (1415), Expect = 2.300e-153 Identity = 250/295 (84.75%), Postives = 273/295 (92.54%), Query Frame = 1
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Match: M5W9X3_PRUPE (Xyloglucan endotransglucosylase/hydrolase OS=Prunus persica GN=PRUPE_ppa009437mg PE=3 SV=1) HSP 1 Score: 514.2 bits (1323), Expect = 1.000e-142 Identity = 235/295 (79.66%), Postives = 258/295 (87.46%), Query Frame = 1
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Match: A0A151RNA4_CAJCA (Xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Cajanus cajan GN=KK1_034507 PE=3 SV=1) HSP 1 Score: 511.1 bits (1315), Expect = 8.900e-142 Identity = 231/295 (78.31%), Postives = 256/295 (86.78%), Query Frame = 1
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 2.900e-138 Identity = 222/296 (75.00%), Postives = 256/296 (86.49%), Query Frame = 1
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=1 SV=2) HSP 1 Score: 400.6 bits (1028), Expect = 1.500e-110 Identity = 182/293 (62.12%), Postives = 227/293 (77.47%), Query Frame = 1
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 1.000e-58 Identity = 115/276 (41.67%), Postives = 154/276 (55.80%), Query Frame = 1
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 3.400e-54 Identity = 108/283 (38.16%), Postives = 165/283 (58.30%), Query Frame = 1
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.900e-54 Identity = 108/276 (39.13%), Postives = 150/276 (54.35%), Query Frame = 1
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Match: AT2G36870.1 (xyloglucan endotransglucosylase/hydrolase 32) HSP 1 Score: 492.7 bits (1267), Expect = 1.700e-139 Identity = 222/296 (75.00%), Postives = 256/296 (86.49%), Query Frame = 1
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Match: AT3G44990.1 (xyloglucan endo-transglycosylase-related 8) HSP 1 Score: 400.6 bits (1028), Expect = 8.600e-112 Identity = 182/293 (62.12%), Postives = 227/293 (77.47%), Query Frame = 1
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Match: AT1G14720.1 (xyloglucan endotransglucosylase/hydrolase 28) HSP 1 Score: 213.4 bits (542), Expect = 1.900e-55 Identity = 108/283 (38.16%), Postives = 165/283 (58.30%), Query Frame = 1
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Match: AT1G32170.1 (xyloglucan endotransglucosylase/hydrolase 30) HSP 1 Score: 209.5 bits (532), Expect = 2.800e-54 Identity = 105/245 (42.86%), Postives = 144/245 (58.78%), Query Frame = 1
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Match: AT4G14130.1 (xyloglucan endotransglucosylase/hydrolase 15) HSP 1 Score: 207.2 bits (526), Expect = 1.400e-53 Identity = 112/271 (41.33%), Postives = 152/271 (56.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10466.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10466.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10466.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10466.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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