Spo11276.1 (mRNA)

Overview
NameSpo11276.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01478 : 40157 .. 44938 (+)
Sequence length930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTGGTCCCCAAAGTTCGCCATCATGGTTGCTTTTTACCTCCTGGTTAGCAATTCTCCTACCCTTTTCTATTCGAAAAAATTGAAAGTGCAAGAAATTCCGTTATTTTTGTGTGTGTGAGGGGAGGGGGGGTGTTAACTGCCCATGATTTTATTCATTGCCTCTGTTTCCGTATGAATTATACTAACAACAAAGCCAGCTGTCTGTTATACTATGATTTTACATGAATGCCCATGCAGCGGTGATGCAAGTCGGACACAACTCTGAATTGTTTTTAATCTTTGCGATAAGCTTTAGCTTTGTAATCCTAACTCTCATGTTTTCCCTTCCTTTACCCATGTCAGACAGGTTTCTGTTCGGTTGCTTTGGTATATAATTTCACTTAACCATGATACATAATTCTATGTTATAACGAGCTTATCACTTTTGATGAATCTTAGCAAGTAGAAATATACTTCGCAAGCTATTTCAGTACCTCACATCATGTTCATCACTGCTGGAATGTTTTCTACTGTCGTTCTCATTTTAGCAGGTTAAATTTGCAGGACACAAGCAATCACTGTTGTTCTTCATGATCTACCAGAAACTTCTTTGGCTCATGGAAGCCTTACTGCAAGAAATTTTCCCATCCCTGAGCTCCACGGGCACCATGACAGAGATTGCAGATCTTTGCATCAGCAAGTTTGCTACTTGTGGACCTCATCCTTACACAGTGTGTCTTATTCTCAAAATTAACACGTTGTAGATGTTGGCCATTATATATTATTCAATGCAATGTAACAGGCATCTGTGCGTTCTCTTTCCCGAGAAGTTGAGACAACATCTCCCTTTGGCCTCTACATGCCCTTAGCCCCTTGCCTGCAGTTAACCAGGTAGGCAGGTAATATTAGGATTTTATCCTTCGTGAAATTTTACTAAAACATGCTTTAAGTAAATTTGATTTATGAGGTGTATGTGAACTTTTTTTCTTGCTTTTCAGACAGGGAGCTTTTAGAGGACATTTATTAAAGCTCACACCAGCTAGTTTTTTGCAGCTTAAAATAGTCATCGGGTATATGCTTTCCAATATTTAAAATCTTTCAAGTAATTTTTTTCCTCAATCATTTTGTTGCTCCTCTATAAACATAGATAAGTTGAGGAATTCAATCAACTACCTAGTGGAAATCTACCTAGATGTATAAATCAAACAAGATATTAGTTTATATACATGTTGGCAGTATGTTACCTGTGTTACTTCACTTGGGTTTATTATTTGACTTAATTAGCTTTTGTGTAGGTTTGCTATAATCTATTCTAATATTTAATAGCAGGCCAGTTGGAGAACCACGTGTCCCCCCCTTGGAATTTAAAATTTTTATTACATTTTTTTTTAAGTTAACAGCCAAAAAATCAACGAAAAAAATCAGATCTTCTACCCTCTTCTCCGACCTTCAATTCTCTCCTCCAACGGTCCAACCTTCACACCTGCAAAATCATAAACCGGAAAACCCGAATATGCATCAATTCAAGAATAAATTATCTCCAAGCTCAAAACCAATCTCAAATTATGAGTTTAATTTCAAAAAAATTGATATTTGGGAACTGTTATCTTCTTCTATTTCATGAGTTATGGCAGTCATGACCAAACAATTCAAGCTTCATATTTTGATAAAATACCCACAAGAACCACGCATGTAAACCCATAAATCATAAACCACCCATTATCTTCTACTCACTTTCTCCTACCTCATGCTAATCGTTTTACCACAGCATGGTTTCTTCGTCTTCATCGGATGAACCATGGCCAATTACTAAGTCTCTTCAACTCCTCTTGAGTTCAATTGAAATTGATAACACTGAAATTAATTGATTAATTTCAAGTTCACACTGATGAATCATTGCATGGCTTCTTGGTCTTGCTGGGAAATTGATTTTGTCTCTCGGTATCTCCACTCTTTCTCTTCCCATACTTGCTTTTCATCTCCATTCAATCTTCCATCTTTATTAATTAGATTTTTTTTTCTTTTTATTTCTGAATTCCAACAAAATGCCTTTTACTGGAAACCCAATTCAACACCATCAACCACCGCAGCAACAACCACAACGGTGTAACGATTATATACATATTCTAACAGTTTATTTTTGGGTAAGTTTGGTTTAGTTGTTTTGTTGCCCTTATTTTATTCCATGAAAATAAATCAATTGTCTCTTATAGAAAAGGTGACGATTCAATTGGATAATTATTTTTTAATTAATTAAATGGGTAACTGCTTCTCTGAACGTTCTAAAAAAATTATCCTAGGATACATTCTATAAACATAATACATAGTATGTCACTAGAAATCTGGGAAAAAAAGTCATTACTACATTGTTCATCACTTGATAATGTAAGTTACTCCATTGTTGCGTTTTTCTTATATTCCATTCTCTATATTGATTTGCTTCGATGACACGTACGTGTTTCAAGGGATATGAATTTCTATAGTATCAGCATTTCCAAATTTAACATAATCTCAATGTCTTCCTGCAGAGCAAATTAAGTGTTGTACCATTGATCAAAGTGGTCCTACTGTTTCCGATTATTAGGTAAGTATTTAGACTATATTCTTATCTTCTTCCTTGCAAAGTTGGAATTTTTTTTTTTTCCTTCTAATTCCCTCAAATGGGTGAATAAACTATTGGTTAAATTAGAATTTAGTTGAGTTTTAAAATAGAAATTTGTGTAATTGCGATGCATATAATAGTATAAGATGATTTCTTTGTGTTAAGTAATTACACAAATAATTGGTTTTTGTGATAATTGATGCATATAATTGTTATGGAAATTTCTCTCATTTAAAATGGTTTTGCAGAATGATTGATTACGTTAAAGTGGTGCAATTTCAGTATAGGGGGAAGGATATAGATGTTAGAACTGAAGTTCATAAGTGTTGCCTACTTGTGATGCCTTGATGAATTTTGAGGATATTTCCAGGAAAATGGGACCTATGATAAATTTTCATTATCCTACATTTCCTTATGTGTTTAAGATAATACATTGCGATCTCCGAATGGATGGAGATTTGATAACCATGTTCAATAGGTTGCCTACTCCATTAAACAAATTGGTGATACATTTTAGATAATAAAATTCCAATAAGACTGACTAACCTGTTCGTGAACTCCATTAGCTTTCCCTGATGTTACTTCAGCAATAGAATAACTAACACCCGGCCCTACAACAAGGCTTATGCTGTAATACCACCATTTTCCAGGATTTCCAACAATAATTTATGTTCAGAAAAGCGAGTTTAGTTTTCCTAAATTTTAATTTTTAATTTTTAGTTGAGTTTAGAAATGTAGTTCAATGTAGAATTCATCTCAAACTTTAATGAGAACAGATGATGGATTAAAGAATTCAAAGGAGTGCACATAAGAATTATCAAAACATTGCCTGTTCTCATATGGTCATCATTGGTGTTGTTTCCCCTATTTTTGAATTGGTATTTTAGCCTCAGCGTTGAAGGGATTAATGCCTTTGTTCTTTATCGAGTTTGAAATGCTGATTATATGCCCTTGTATTGTATTCAAAATCATGTTGTTGTATTTTGGGTTTATCTCCTATTTTCTTTCATTAGAAAAGTTCTACTAAAACAGTGAAGTTATAGCCTTGCGTCTAATCAACACTCATGTTTTAGCAATGTGTGGTACTCTTCTTTGGATCTTTTCCTTGCTCTTTGTGTTAATAGAATGCCATAAAGTATTCTTGGAATTTTAAGCTTTCTTAGGTGGCATGCTACTTTTGGCATGACTGCATCATCTATTTATTTTGATAGTCTTACTATGGGAGTTTGTAATTGGGGTTGAAGTTTTGGATTCTATTAATGGTCTCTTGAGTTGAAACAAATTTCTTGAACCTTGGAAAAAGGGTCAGTACTCAGTAGAGAGGGGTGATTAGTTTGTATCGTGAATGTATTTTCTCAAACTGCAGTGTTACTCTAAATCTTCACCAAAGAAATTGAAATTTCAAAGCAAGTACTAAAATCTTGACTACATTAGTCATTGACAGATTTGGTTGCCTAAATTTATTTATTTTAAAGTGCTATCATGTTATTCTTCTATACCCCTTTTACTTATGCATTACTTGTCAAGTTAACCTAAATGCAGGAGCATCCCATTCTCCACAGAAGTGAAAAATACATCACAATTTGAGGACAAGAAAGGGTAAATCTGTTGTGCAACAGAAAATTTACATGGTATAACTACTATTAAAATTTTGCAGGATTTTGGTTTGTGTAATACTCATAAGTCAAAACTAGCATGTAATTGCTACATTACTTTGCAGCATAAGCAGGATGTCCCCATGAAGGAAAATCAGCTACTTTGTACGGAGTATATGACTTCTTTTCATTAAAATTCAATTATTGGTGGTGCAACTCCAAGCACAGAATTGTTTCCTTCATGTTTTGGTCTTTGAAATCATCAGGAAACATCAATATTACATCACTTGCAGAATTTGTTCTACAGTTCAACAACCAAATATGTTAACCTAGGATTATTCTTGCGTCCACAATAATATTAGTGTGGACCGAAAATCAATAGTTTTATGTAGCACTTTTTTTACACGTTCATATAGTAACTATAATAAATTAAACACCAAAATTCTTAGACATAGTAACCATTTTTTGAAGCATAGTATCCCTATGTTTTTAAAAGCGAATTGTGACTTAAAATCACATTATTCAAGCATAACATGTATTGACGACACTAATTTGATATTTTTTTTCCATAATAATCTTAATAAAATGCCAAAATAAAT

mRNA sequence

ATGGAAGTTGGTCCCCAAAGTTCGCCATCATGGTTGCTTTTTACCTCCTGGACACAAGCAATCACTGTTGTTCTTCATGATCTACCAGAAACTTCTTTGGCTCATGGAAGCCTTACTGCAAGAAATTTTCCCATCCCTGAGCTCCACGGGCACCATGACAGAGATTGCAGATCTTTGCATCAGCAAGTTTGCTACTTGTGGACCTCATCCTTACACAGCATCTTTAACCAGGTAGGCAGACAGGGAGCTTTTAGAGGACATTTATTAAAGCTCACACCAGCTAGTTTTTTGCAGCTTAAAATAGTCATCGGAGCAAATTAAGTGTTGTACCATTGATCAAAGTGGTCCTACTGTTTCCGATTATTAGGAGCATCCCATTCTCCACAGAAGTGAAAAATACATCACAATTTGAGGACAAGAAAGGGTAAATCTGTTGTGCAACAGAAAATTTACATGCATAAGCAGGATGTCCCCATGAAGGAAAATCAGCTACTTTGTACGGAGTATATGACTTCTTTTCATTAAAATTCAATTATTGGTGGTGCAACTCCAAGCACAGAATTGTTTCCTTCATGTTTTGGTCTTTGAAATCATCAGGAAACATCAATATTACATCACTTGCAGAATTTGTTCTACAGTTCAACAACCAAATATGTTAACCTAGGATTATTCTTGCGTCCACAATAATATTAGTGTGGACCGAAAATCAATAGTTTTATGTAGCACTTTTTTTACACGTTCATATAGTAACTATAATAAATTAAACACCAAAATTCTTAGACATAGTAACCATTTTTTGAAGCATAGTATCCCTATGTTTTTAAAAGCGAATTGTGACTTAAAATCACATTATTCAAGCATAACATGTATTGACGACACTAATTTGATATTTTTTTTCCATAATAATCTTAATAAAATGCCAAAATAAAT

Coding sequence (CDS)

ATGGAAGTTGGTCCCCAAAGTTCGCCATCATGGTTGCTTTTTACCTCCTGGACACAAGCAATCACTGTTGTTCTTCATGATCTACCAGAAACTTCTTTGGCTCATGGAAGCCTTACTGCAAGAAATTTTCCCATCCCTGAGCTCCACGGGCACCATGACAGAGATTGCAGATCTTTGCATCAGCAAGTTTGCTACTTGTGGACCTCATCCTTACACAGCATCTTTAACCAGGTAGGCAGACAGGGAGCTTTTAGAGGACATTTATTAAAGCTCACACCAGCTAGTTTTTTGCAGCTTAAAATAGTCATCGGAGCAAATTAA

Protein sequence

MEVGPQSSPSWLLFTSWTQAITVVLHDLPETSLAHGSLTARNFPIPELHGHHDRDCRSLHQQVCYLWTSSLHSIFNQVGRQGAFRGHLLKLTPASFLQLKIVIGAN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11276Spo11276gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11276.1Spo11276.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11276.1.exon.1Spo11276.1.exon.1exon
Spo11276.1.exon.2Spo11276.1.exon.2exon
Spo11276.1.exon.3Spo11276.1.exon.3exon
Spo11276.1.exon.4Spo11276.1.exon.4exon
Spo11276.1.exon.5Spo11276.1.exon.5exon
Spo11276.1.exon.6Spo11276.1.exon.6exon
Spo11276.1.exon.7Spo11276.1.exon.7exon
Spo11276.1.exon.8Spo11276.1.exon.8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11276.1.CDS.1Spo11276.1.CDS.1CDS
Spo11276.1.CDS.2Spo11276.1.CDS.2CDS
Spo11276.1.CDS.3Spo11276.1.CDS.3CDS
Spo11276.1.CDS.4Spo11276.1.CDS.4CDS
Spo11276.1.CDS.5Spo11276.1.CDS.5CDS
Spo11276.1.CDS.6Spo11276.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11276.1.utr3p.1Spo11276.1.utr3p.1three_prime_UTR
Spo11276.1.utr3p.2Spo11276.1.utr3p.2three_prime_UTR
Spo11276.1.utr3p.3Spo11276.1.utr3p.3three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo11276.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11276.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11276.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11276.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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