Spo10133.1 (mRNA)

Overview
NameSpo10133.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionAlba DNA/RNA-binding protein
LocationSpoScf_01452 : 20096 .. 24344 (+)
Sequence length1154
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCTTGGTGGCCGAGCACAAATCATGTTTCTAGTTTTAGAGGAGAGAGAAAATAAGAAAGAAAGAGTCAAGGGTTTACGGTTTGTGTACCAGTTTAACAACAACAACAACAACAACAACCTACCAGTCACCCTGAAACCCCAGTTTTCCTGAAGAAGAAAAAAAACAAGCGAAAATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGGTAATTATTTTCGTATTTTGATGGGGTTTTCTTATTGTTTTTGATGAAATCTTATCTGGGTTTTTATTTAATTTTTAGTATTATTTTGTTAATTGGTTGCAAATGGGACTAATTTGCTCGTTTTTATTTTAATTTTTGAAAATGTTGGTGTGTATGTAATTATTGATGATACCCAGATAAGGAAATGCGGTATACATTGGCAGGACGTGTTACTGGGTATAACTATGATAAATTTGTCAGGATTTTTGTATTATAGGTGGGAACAATGTTGTGTGAAATGAATTTGGAGTTTCCTGTCATTGATGATTAGGAGTAGTCATTAATCAGGGTGGAATAGGTTTAATTTGGAATCTGGTTATTGCGATAGAGCTGATTTACACTGATTCAAAGGTAGACGACAAAATCAGGATGGGTTAGTGATATTTCAAAAATTTATGCATTATGTAGTGGTTATGATTTAAAAAATTTAGTGCTGGGTTCGCTAATTTTGCTGCTCTGAGTACTCGTATGGTACTCGAGCTTCGTGGGTGCATTCTTTAGTTTTGTGTCTAGTTAAATATGTGATGTGGGTTTATAGATGTAACTAAAATTACCAATGAACTGCATTTGTTAACCTGTGCTATGATATCTTAATGGCTGTGGAATTAATGTGGACGATATTATTTTTGTAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGGTATGTCTCTTATTTGTTTGATCTATTCCATAATATGCTTTCTTGTTCTGCTTTATTTTGTAGAAAAAATTGAAAGAAAGATGATGAGGGTCATATGTGGTCCTCTCTTTTTATTTGTTCTTGTAATGTTTTAAAGGTTTAGCCTTTTTATGCTGGTGGCTTGTGTTTAACCTGAGAGCCGGGATTTCTTGGCAAAATAAAATGGTTACTCGTTTAAACCTTAATTTTTTCAGTTTTAATAAACGGCTGATAAGCTCAAGGTTTAACAGCTGCACTTAGGCTCCGTTTGGTAGAGCGTAAAACGTTTTTAATGTAAAATGATTTTCCATGGAAAACATTTTTCAAGGGAAAACACAACTCCAAACTAGTTTTCCTTTGTTTGGTACCTTAAAGGAAAATTGGAGAAGATGGTGAAGATTGAAGGGAAAAAAAGGAGAGGGAGTTAAGGAGGAAAGAAGGAAAAGTGGTTTCTCTCCATCTCAAATGGATGTGGAAAAGGGTTTTCCACATTTGAGGGAGTCATGGAAAATTGTTTTCCATCCCTTGCCCAACCAATCAAAGTAAAATGATTGAAAAGGGGAAAATCGTTTTCCATGAAAACGTTTTACGCCCTACCAAACGGAGCCTTATAGTTAGACTGTTTGCTTCAGCACAGCTACCAAGGCCAATCTAGTGTATCCAAAGTAGAATATATTGAAGGTTCTTCTGATTAGTTCAGCTACTTAGCTAGATTGTTTGGTAACATACATTTAAGTGACAGGTATACAGACATGGAAATACGGGTAACTGAAGATACAGGACAAATATACAGATATAGGCAATGTATTTTTAAATCTAGGTAAATAAAAAAATATTGTAGAAATTTGGGTAACTCTTTTCCTCTCAAATTTTGTATGCGCCCAATATGTTTTGTGTATTAACTTTTTGCAAACATGCAAGAGTGTAATTAATGAGTTAACCTGAACCTATGGTATGTTAACATAGTGGAAAAGGAAGTTATACAGATGAATATGCATTTATTAACCGTAGAGGCCAATGTTTTGATACAACCATGAAAAGGTGGATGAATCAAAGAAAGTTAGATTAGATAGTTTACTTAGTTATCAGTTAAAGGAATAATAATGTACACGCACTTGCACAAAATCATCTATACGGGGTTGAGATGTGCAGAACTCCAATATGTGTCAGATTACGATCACGTCTCCTAAAAGTCTGTGCAACATAGTTATATCAGTTCTTTTTGGTTGGCTATTTCTTGCTTCTTATGGTATTTGTTTGACCCCTTTGCAAACTAGCATGATACTCATGTTAGCCTTTTTGTGTATTGACTTTCCACACTCTCCTAACTATTTTAATAGTTTGTCTTTTGGGAAAGGGTTGTGTTGGTTAAGCCGTTAAGGCGTGAGTACAATGAAGCCAATATGTGCCAGTGTTAGAGCTTGTATTAGGAAATACTGAAATTTCAAAGGCTTTGCTAATATGTTGAAAACTTGTGTGAGTTTACAGAAAAAGGTGACTGAAATCGTGAAATTTAGGTTTGCCCACGAGTAAACATCTGGTCTTGGTGCACTTGGGAGTTTGTGGTTATTAGTTTTCTCCTGCAATTGTTGGAGCCAAATACCATTACCATAATACTTTTGAAGTTTTGATTTACCTGCAATTGCGGTATTCAGATACCATTATCATAATACTTTTTAAGTGAAACATATTCAAAATGAGCTGCAGGCCTTTTATTTGCCTTGGTTCGCTTGGTGCATAATTACGTATTATAAATGAAGCCTAATTGATTCCTAGTGGGTACATGCTGTCAGTCCATTTGCACTTCAAATATTTTACTAACTCTGTACCCTGTGGGCTTGGTTCTGTATAAAACCTTTGTACCAATAGCCTGTTATTCCTCTGAATGATCTAATTCTAACGATTTAGTGCTTGTTTTCTTAGATCAGGGAAGTATTTCTTCCCAAAAAGTTACCAAGTACACTCATGGCCAATTAGTTTCACTTGCTAAGAATTCAATTTATATGTCAACCAAACAACTGCTTACTTGCTTGATGTTCTGTGCAGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAGTTAGTAACTTATTTCCTTTTCACTTGTCTCACTCTTGCACTCAGTTGTTAATGTTGTTTGGGATCTTCTTCTCGGTATGTATTGTAAATTATGGTCAAATATTGATACTACGCTATTTATCTTTGATAGAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGGTATTTAGCCAACACAGCTGTTATTTTGTACATTTGTTCCTTGTGTTGTAGGAAATAACACAATTGTTAGTGGAAGATGTCCATTTCCTGAGGAAAATGAAGTACTCTGAATGAAATTGTCTAGATTTAGTTGCCACATTGGCCTAAATAGGCATATTAGAAAACCAGTTACTGGAAGAGGGATTATTATTATTCAGTTGTGTTGATTCTATTTTTATATTCTCGTGTAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAGGATGTCCAAGCTCTACAGTTTTATCTATCAGACTATCAGTCTCTATTGTGTGTTTGCTGCTGGGTTGTCTTGATTTCTGCCAAGTAAATTGTACTAACAGATTTAGCTACAAAGGCTTTCCCTATCAATTTTGTAACACAAGGAAACAAATCTTGTACTGGCTTCTCACACTGCAAATTGTCATTTATTATTTATGTTATGCTTATAGGATTTTTGATTGTCGCATTCACTTTAATTACTATCAAGTACTGGTAAAAGTTCGTCGATAGTTATGGCTTGCAAAGATCGTCACTCTTAGAGAACTTGATTGTATTTGTTGTTAATCCAATATGCAGGGTAATGTAATTCATACTTCTGCAATAATTGAGAACACAGGTTCACGCGTTCACCTACAGCGCTGCAACTTTGAACAATAGCGACACACGAATTCCTAACGCCCAATTTCTGTCCTTTTAGCCCACGATGCACACTACACAAACATAGCTCACCAAATCAAAAACAGTGGCTCAATAAAAAC

mRNA sequence

AGGCTTGGTGGCCGAGCACAAATCATGTTTCTAGTTTTAGAGGAGAGAGAAAATAAGAAAGAAAGAGTCAAGGGTTTACGGTTTGTGTACCAGTTTAACAACAACAACAACAACAACAACCTACCAGTCACCCTGAAACCCCAGTTTTCCTGAAGAAGAAAAAAAACAAGCGAAAATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAGGATGTCCAAGCTCTACAGTTTTATCTATCAGACTATCAGTCTCTATTGTGTGTTTGCTGCTGGGTTGTCTTGATTTCTGCCAAGTAAATTGTACTAACAGATTTAGCTACAAAGGCTTTCCCTATCAATTTTGTAACACAAGGAAACAAATCTTGTACTGGCTTCTCACACTGCAAATTGTCATTTATTATTTATGTTATGCTTATAGGATTTTTGATTGTCGCATTCACTTTAATTACTATCAAGTACTGGTAAAAGTTCGTCGATAGTTATGGCTTGCAAAGATCGTCACTCTTAGAGAACTTGATTGTATTTGTTGTTAATCCAATATGCAGGGTAATGTAATTCATACTTCTGCAATAATTGAGAACACAGGTTCACGCGTTCACCTACAGCGCTGCAACTTTGAACAATAGCGACACACGAATTCCTAACGCCCAATTTCTGTCCTTTTAGCCCACGATGCACACTACACAAACATAGCTCACCAAATCAAAAACAGTGGCTCAATAAAAAC

Coding sequence (CDS)

ATGGAGCAGGTTGCAGAGGCCGTTAGCAATCTCACCATCACAGATTCACCCAACAACAATGAAAATAACAACAACAATGAGAACAACAACAACAACAACCACAACAACAGCAGCAGCAATTTCAACAACAACAAGAAAAACCGTATTCAAGTTTCCAACACTAAAAAACCCCTTTTTTTCTACGTGAATCTTGCCAAGAGATACATGCAACAGCACACAGAGGTGGAGCTCTCTGCTCTTGGAATGGCCATCGCAACAGTTGTCACAATTGCTGAGATTTTGAAGAACAACGGATTTGCTGTTGAGAAGAAAATAACCACTTCAACAGTCGACATCAATGAATCAGGTGGGAGGCCTGTCCAGAAAGCTAAGATCGAGATTGTACTGGAGAAGTCAGAGAAATTCGATGAGCTGATGGCCGCTGCTGCAGCAGAGGCTGCTGAAGAAGAGGAGCAGGCGTAG

Protein sequence

MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10133Spo10133gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10133.1Spo10133.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10133.1.exon.1Spo10133.1.exon.1exon
Spo10133.1.exon.2Spo10133.1.exon.2exon
Spo10133.1.exon.3Spo10133.1.exon.3exon
Spo10133.1.exon.4Spo10133.1.exon.4exon
Spo10133.1.exon.5Spo10133.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10133.1.utr5p.1Spo10133.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10133.1.CDS.1Spo10133.1.CDS.1CDS
Spo10133.1.CDS.2Spo10133.1.CDS.2CDS
Spo10133.1.CDS.3Spo10133.1.CDS.3CDS
Spo10133.1.CDS.4Spo10133.1.CDS.4CDS
Spo10133.1.CDS.5Spo10133.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10133.1.utr3p.1Spo10133.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|902189027|gb|KNA11277.1| (hypothetical protein SOVF_136710 [Spinacia oleracea])

HSP 1 Score: 253.1 bits (645), Expect = 3.200e-64
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNE-NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60
           MEQVAEAVSNLTITDSPNNNENNNNNE NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF
Sbjct: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60

Query: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120
           FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP
Sbjct: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Sbjct: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|731320146|ref|XP_010670649.1| (PREDICTED: uncharacterized protein At2g34160-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 208.0 bits (528), Expect = 1.200e-50
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           MEQV E VSNLT+TDS   ++N NN  NNNNNN      NFNNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEQVTEGVSNLTVTDS---SDNTNNTTNNNNNN------NFNNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120

Query: 121 QKAKIEIVLEKSEKFDELMAAAAAEAAE-EEEQA 154
           QKAKIEIVLEKSE FDELMAAAAAE A+ EEEQA
Sbjct: 121 QKAKIEIVLEKSENFDELMAAAAAEEADAEEEQA 145
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|728807761|gb|KHF97780.1| (hypothetical protein F383_15777 [Gossypium arboreum])

HSP 1 Score: 170.2 bits (430), Expect = 2.700e-39
Identity = 110/155 (70.97%), Postives = 118/155 (76.13%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS  +N                     NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDSSPSN---------------------NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG AVEKKI TST+D+  ESGGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTIDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLAKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|590579644|ref|XP_007013844.1| (Alba DNA/RNA-binding protein [Theobroma cacao])

HSP 1 Score: 169.5 bits (428), Expect = 4.600e-39
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL ITDS  +                        NKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNITDSSAS------------------------NKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNG AVEKKI TSTVD+  ESGGRP
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTVDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAA+A E  + EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAASAEEVLDNEEQS 130
[Close]
BLAST of Spo10133.1 vs. NCBI nr
Match: gi|823154438|ref|XP_012477094.1| (PREDICTED: uncharacterized protein At2g34160-like [Gossypium raimondii])

HSP 1 Score: 169.1 bits (427), Expect = 6.100e-39
Identity = 110/155 (70.97%), Postives = 119/155 (76.77%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS                    S+SN NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDS--------------------SASN-NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINES-GGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG A+EKKI TST+D+ E  GGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAIEKKIMTSTIDMREELGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136710 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.200e-64
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNE-NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60
           MEQVAEAVSNLTITDSPNNNENNNNNE NNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF
Sbjct: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLF 60

Query: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120
           FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP
Sbjct: 61  FYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA
Sbjct: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT73_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042840 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.200e-51
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           MEQV E VSNLT+TDS   ++N NN  NNNNNN      NFNNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEQVTEGVSNLTVTDS---SDNTNNTTNNNNNN------NFNNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINESGGRPV 120

Query: 121 QKAKIEIVLEKSEKFDELMAAAAAEAAE-EEEQA 154
           QKAKIEIVLEKSE FDELMAAAAAE A+ EEEQA
Sbjct: 121 QKAKIEIVLEKSENFDELMAAAAAEEADAEEEQA 145
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MFW9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15777 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.900e-39
Identity = 110/155 (70.97%), Postives = 118/155 (76.13%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS  +N                     NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDSSPSN---------------------NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG AVEKKI TST+D+  ESGGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTIDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLAKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A061GPW4_THECC (Alba DNA/RNA-binding protein OS=Theobroma cacao GN=TCM_038396 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.200e-39
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL ITDS  +                        NKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNITDSSAS------------------------NKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDI-NESGGRP 120
           YVNLAKRYMQQH EVELSALGMAIATVVTIAEILKNNG AVEKKI TSTVD+  ESGGRP
Sbjct: 61  YVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLAVEKKIMTSTVDMREESGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAA+A E  + EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAASAEEVLDNEEQS 130
[Close]
BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RBL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G274000 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.200e-39
Identity = 110/155 (70.97%), Postives = 119/155 (76.77%), Query Frame = 1 

		  

Query: 1   MEQVAEAVSNLTITDSPNNNENNNNNENNNNNNHNNSSSNFNNNKKNRIQVSNTKKPLFF 60
           ME + E V+NL I DS                    S+SN NNNKKNRIQVSNTKKPLFF
Sbjct: 1   MEGITEGVNNLNIMDS--------------------SASN-NNNKKNRIQVSNTKKPLFF 60

Query: 61  YVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKNNGFAVEKKITTSTVDINES-GGRP 120
           YVNLAKRYMQQ+ EVELSALGMAIATVVTIAEILKNNG A+EKKI TST+D+ E  GGRP
Sbjct: 61  YVNLAKRYMQQYNEVELSALGMAIATVVTIAEILKNNGLAIEKKIMTSTIDMREELGGRP 120

Query: 121 VQKAKIEIVLEKSEKFDELMAAAAAE-AAEEEEQA 154
           VQKAKIEI+L KSEKFDELMAAAAAE A E EEQ+
Sbjct: 121 VQKAKIEILLGKSEKFDELMAAAAAEDALENEEQS 134
[Close]
BLAST of Spo10133.1 vs. ExPASy Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.100e-35
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   ++ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVT+ EIL
Sbjct: 9   NNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQ 153
           KNNGFAVEKKI TSTVDI +++ GRPVQKAKIEI L KSEKFDELMAAA  E  + E Q
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQ 127
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 156.0 bits (393), Expect = 1.900e-38
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   +  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+T+VELSALGMAIATVVT+AEIL
Sbjct: 9   NNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAA--AAEAAEEEE 153
           KNNGFAVEKKI TSTVDI ++S GRPVQKAKIEI L KSEKFDELMAAA    EAAE +E
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKEAAEAQE 128
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.800e-36
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 1 

		  

Query: 35  NNSSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEIL 94
           NN +   ++ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIATVVT+ EIL
Sbjct: 9   NNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEIL 68

Query: 95  KNNGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEEQ 153
           KNNGFAVEKKI TSTVDI +++ GRPVQKAKIEI L KSEKFDELMAAA  E  + E Q
Sbjct: 69  KNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQ 127
[Close]
BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 131.7 bits (330), Expect = 3.800e-31
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 1 

		  

Query: 37  SSSNFNNNKKNRIQVSNTKKPLFFYVNLAKRYMQQHTEVELSALGMAIATVVTIAEILKN 96
           +++    +KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVTI+EILKN
Sbjct: 28  TTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKN 87

Query: 97  NGFAVEKKITTSTVDI-NESGGRPVQKAKIEIVLEKSEKFDELMAAAAAEAAEEEE 152
           NG A EKK+ TSTV + +E+ G+ VQKAKIEIVL KS+KFD L+         EEE
Sbjct: 88  NGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEE 143
The following BLAST results are available for this feature:
BLAST of Spo10133.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189027|gb|KNA11277.1|3.2e-6499.3hypothetical protein SOVF_1367... [more]
gi|731320146|ref|XP_010670649.1|1.2e-5085.7PREDICTED: uncharacterized pro... [more]
gi|728807761|gb|KHF97780.1|2.7e-3970.9hypothetical protein F383_1577... [more]
gi|590579644|ref|XP_007013844.1|4.6e-3968.8Alba DNA/RNA-binding protein [... [more]
gi|823154438|ref|XP_012477094.1|6.1e-3970.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo10133.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVH3_SPIOL2.2e-6499.3Uncharacterized protein OS=Spi... [more]
A0A0J8CT73_BETVU8.2e-5185.7Uncharacterized protein OS=Bet... [more]
A0A0B0MFW9_GOSAR1.9e-3970.9Uncharacterized protein OS=Gos... [more]
A0A061GPW4_THECC3.2e-3968.8Alba DNA/RNA-binding protein O... [more]
A0A0D2RBL2_GOSRA4.2e-3970.9Uncharacterized protein OS=Gos... [more]
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BLAST of Spo10133.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2416_ARATH3.1e-3576.4Uncharacterized protein At2g34... [more]
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BLAST of Spo10133.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G29250.11.9e-3880.1Alba DNA/RNA-binding protein[more]
AT2G34160.11.8e-3676.4Alba DNA/RNA-binding protein[more]
AT3G04620.13.8e-3168.1Alba DNA/RNA-binding protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3D3.30.110.20coord: 45..152
score: 8.4
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 47..107
score: 3.9
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 46..140
score: 3.79
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPIRPIRSF030333UCP030333_Albacoord: 1..153
score: 2.8
NoneNo IPR availablePRODOMPD010497coord: 55..131
score: 0
NoneNo IPR availableunknownCoilCoilcoord: 132..152
scor
NoneNo IPR availablePANTHERPTHR31947FAMILY NOT NAMEDcoord: 36..153
score: 1.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003676 nucleic acid binding