Spo01222.1 (mRNA) | SpinachBase

Overview


Name	Spo01222.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Arginine/serine-rich splicing factor, putative
Location	chr2 : 58050339 .. 58054932 (+)
Sequence length	1608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGCCTTTTTTCTTTTTCCTTCATAGGTCTATATAACTAACTAAAGTCGCCATTCACTACCATCTCTTTTATTACTCCGTAAAAAAAAAAATCCCCAGACAATTATCGACTGTTTGCAATTAGGGTTTTTCTCTCTCGTCCTTCCTCTTCCATTGAGTTGATCGAAGGTAAGCTAATCAATTCTCCAAGTTAACGTTTGCAATCACATCAAATTCTGATGTTCGCTTTAATTTCAGTTTAATAGAAGGGTAGTTCACTAATTTTGCTGATAATTTTCGTAGTTTAGCGTTTCAACCGAAGTACGATGAGGCCTGTTTTCGTCGGGAATTTTGAGTATGATACTCGTCAAAATGATCTCGAGCGACTTTTCTCCAAGTACGGCAGAGTTGATCGCGTTGATATGAAATCTGGTAAGTTTCATTTCGTTGTCGATTTTTTTTTTTAAATACGAAGTATAAATCTGTTGGTGGTTGAAGTTCCTGAACTTTCTTCTATGAGTTTCTGGTTCCGTTTCCAAATTAGTTTCAAATGCACCTTTGATTTTGGTTTCAAAGTTTCAATTTAGAGAAACGAAAATGTACAGGATAATGGGTTTTTCCTGATAGAGTTTGGAGCTTTTGTGTTTTTAGGGTATTTTGATTTGAGCTTAGTTAAGCTTCCGTCTTACCTTTTGGTATTTAATATTTCTGTTGTGTGCTACATTGGACTATTTGAGACGAGTTTCTGCAACTGGGAGTAAAGAGTGGTGCATTAGACCCAAGGATTTGGTGTAAGTTGTGAGATTGCTATCACGCATGCAAATATGCTAACTATGGGAGATATTACCTGTCGTTTCACTGACTCTGGAAAATCTTTTTAGTCATCTTTTATTGGTATGCTGTCAATGTCACACTTGAAGTTCATCACTGCAGCTTAAGAGTTCCATTTACTGAAGTGTATGAGGCTTTTCTGAAGTGTATGAGTTTCATTTATGAGTATATATCAAGTTGTTCGAAACACCATGACTCAAAATTCAGGGCATAGTGATTTTATCTAACAAGTCGATGCAATTGCAAGGATTTCAGGACATGCTAATTTGTTACTCCGGAAATACCATCTTTTTAGCTGGATTGGTTTGTTAATTCTTGTCAAATTTTTTTTATGTTGCCCATTTATGAGCATATTTAGCATGTCACATTGTTTTCTGTTCTCTTCAATCCGTAGTTCAAGTTAATGCCATGGCGAGCTAAATATTTTTAAGTGAAATGTTTTTTACCTGTAGTACATTGTCAAATTTCCAGCAGGAGTACTTGAGAACTTAAGATGACCTAGAGAGTTGGAGCAACTTAGTCTGTGTTAAGTTACTTGTTTCAATTATCAGACTTGTGCCCTAGTGCTTCTGTAGATAATGTCCAATATTCATTATGAGTTTATATGAACATTATGTTTGTCAATGGAGAGTTGGGGTAACTTAGTCTTTTATTGGTTAATCATTTAATTTGCACAATTGTTTTGTTGTGCATCTTAGAAATTTGACCAGTAGTCGTAGTCCTCATATGTTGGCTATTCAAGTTCCAGTTTTGTGTGCTCATAGTTCTTGACCATATGGTTCCTTTGTTTGATGGTTGGAGCTTTATTGTGATATATAGTGTGAAATTATATTGGAGTGTATTGATGAGTGTGACATGGCCCCACTTGGGAATTCACTGTCTGATTTTCATTTTTGGCTTGAGTTTTTTAACGACGGAGTCTATATATAATTGGTTTCATTCCCTCTGTTGGGGTTAAACGACTTCTCTGTTCTGGACCTTTAAGCTTTGTCCTGATCATTTCTATGTTTTACTAGCTGTAGTATTGCATTATAATGGCCTTTTTTTTTTTTTTTTTTTAACGTATGGATAATTATAGCATCCTTCTCTTTAATATACTGCCATCGTTACTTCCATCCTTTGACTGGGTATGGCTAAATAGATTATATTACGGTGTCAATGCTCAATCTTCCACTGGGCAGGATTTGATGTCAGCCGCAAGTATACAGTTTGTTTGGAGATATACTCCATATTAAGTGTTTCTTTTGACGCAGGAATCTGAGCTTCCATCTGGATTCTACAACACTGCACAAATTCCTTCTAGTGGAAAGGAAGCTTTCGTGTTGTGTGCTTTCCACAAATCAGATAGAAACGCACTGCATTTTCTTCAACCTGATCATCCATCCTTCACTCTACATTGCTTTGAGTTATCTTTTTTCCAAGAATGGTCATCCTTGGCTCAGTCAAATCATGCCATGCACACCACATTTCATCATTCAGAGCTCAATGATTTATGTCTTGCCATGCCTTCTTATCCTGAAATCGTGCTGTATGAATTGGAGAAGAATGCTTTGCAATGACAGTCTGAAACTTTGGATTTAGATTTTTATATTGCCAACCATATGCCAACCTTGATTTAGTCATCCTGCACGCTTCTACATCCTTAAGTTCATCAGACCTACACATTTGTTCAGGTGTTGTATTTTTCAAGTTACTGCCTGGCAAAAAAATCATCATTTGGCTGAAGTAACTCCTATGCCATAGCTGTAGTGCCAACCAACACCATGTAGCTCTTCTGCTTACTATTTTCTTTTTGTGTGTGCAGGGTTTGCTTTTGTTTACTTCGTTGATGAGCGTGATGCGGACGATGCCATTCGTGCTCTAGACAATGTTCCGTTTGGCCATGACAAACGCAGGCTGTCAGTGGAGTGGGCCAGGGTATGTTACTGTTTGGCATGCACAGTTCCCTTGCTAAAGTACCCTTTTTTCGACCTGTGCAATTAACTTGTTAAAGTACCCTTTTTCGACCTCAGAAAGTAATTTAGGATTGCAACTCTCCAGTATCCTATCCTAGAAACTTACTCTCTTTACTGATTTGGTGTATTATTTCATTTCTGTCTCTTTTTTTCCTGAAGGGTCCCTATATTTGTTCTACTTTTTTTTGGTTCTGTTTTTTCTCTGCTAGGCAAACCTTGACCGATTCTCCAGTATCCATTTAACTAGATACTTCGAAAATAGGGGTATTTAAATTGATTTCTATAGTACATGTAGGTATAGGACTGTTTTACTTATGTGGTTTGCAATTTTTTGCTGCAGGGTGAAAGGGGCAAGGCCCGTGATGGATCCAAGGGAACAAGTCAGAGAGTTACTAAGACCTTATTTGTCATAAACTTTGATCAAATAAGAACACGTGACCGGGATCTAGAGAGACACTTTGAACCTTATGGAAAGATTTTGAGCGTCCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACTCAGGAAGATGCAACTAAGGCTCTTGAATGCACCAACATGAGGTTATTTATATTTCTTTTTACTTAAATTGATAATTGGGTGTATACTAGACATCAACATCATGCTTACTTGCCAACTTTGCAGCAAGCTGTTGGACAGGGTAATCTCAGTTGAATATGCCCTCCGTGATGACGACGAAAGAGATGACAGGCGTGCGCCGCGTGGCAGTCCAAGAGGTTATGGCCGGAGTCCTCTGCGTCGCTCACCAAGTCCACATTTTCGTCGCAATCGGCCAAGTCCTGACTATGGTCGACCTCGTAGCCCTGTTTATGATCGATATGATGGTCCAGCTTACGAGAGGCGTCGTAGTCCTGATTATATTCGATACCGCAGGTAGGTCTTTGTACCAACTTTTTTTTTTTGAAAAGTCAAGGACTAATACATGTAAACAACCTTCTCACTATCAAGAATCGAAAGAAGATGTGGACTAATACCATGATAAAAAAAAAAAGACTAATTAGGTTTTGTACCATATAATGTACACAAGTTTCTATTAAGCTGAATTTTCTACTTATTACCCTTTTGTTGTTATCACAGCCGATCACCAATTCGGAGGTCAAGAACTTGAAAGCTTCAAGCACTCATCACCAATTCGGATATGGAAATACTAGTCTAGTGTTCTCTTGAAATGAATCTAGTTTGAGAAATTTAGAATTTTGCAGTGTACTTACCTGTAATCAATATTCTGTGGAATACTTTGTTCTATATCTCTGTGAAAACATCAATGTGTTTGATTTACATTGTGAAATATTTATGGTGTTGATCTATATCTATGGTTTTGGTATCTTTATGCATTCTCGTTTTTTACTTTTCCTGTATTACAAATAATGGGGTTGTAATTTAAAGGCGAAATTCCGAAGTGTATGTGCTAATTCTGAGATCTTATCATTGGATGACTATTTGAAACTGCAATTGACATTCATTCATCCACAAAAAGTTCTTCATGCATGATGCATGTAATACAATGTTACAAACCTACATAAAAAGTCAGTAATTCTAAACAGATGGTGATCGAAGTTCCTGTTGAAGTGCTTTATCAAGCCACATTTCTGCATCTTCCATCATCCCAGGACTGAGCCTGACCATCAGAATACAAAACTCTTTCTCATTGAGCATCCCATCTCTATCAAGATCACCTTCTCTCACCATAGCTGCCGCGTCTTCACTACTCATCTCTCCCATTCCAAGCAAAGCCGAGTTCTTCCTCAAACTCTCGGACGTGATCATCCGTTTCTCGGGGTCAGCTAACAGCCTAAACCCAC

mRNA sequence

TTTGGGCCTTTTTTCTTTTTCCTTCATAGGTCTATATAACTAACTAAAGTCGCCATTCACTACCATCTCTTTTATTACTCCGTAAAAAAAAAAATCCCCAGACAATTATCGACTGTTTGCAATTAGGGTTTTTCTCTCTCGTCCTTCCTCTTCCATTGAGTTGATCGAAGCGTTTCAACCGAAGTACGATGAGGCCTGTTTTCGTCGGGAATTTTGAGTATGATACTCGTCAAAATGATCTCGAGCGACTTTTCTCCAAGTACGGCAGAGTTGATCGCGTTGATATGAAATCTGGGTTTGCTTTTGTTTACTTCGTTGATGAGCGTGATGCGGACGATGCCATTCGTGCTCTAGACAATGTTCCGTTTGGCCATGACAAACGCAGGCTGTCAGTGGAGTGGGCCAGGGGTGAAAGGGGCAAGGCCCGTGATGGATCCAAGGGAACAAGTCAGAGAGTTACTAAGACCTTATTTGTCATAAACTTTGATCAAATAAGAACACGTGACCGGGATCTAGAGAGACACTTTGAACCTTATGGAAAGATTTTGAGCGTCCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACTCAGGAAGATGCAACTAAGGCTCTTGAATGCACCAACATGAGCAAGCTGTTGGACAGGGTAATCTCAGTTGAATATGCCCTCCGTGATGACGACGAAAGAGATGACAGGCGTGCGCCGCGTGGCAGTCCAAGAGGTTATGGCCGGAGTCCTCTGCGTCGCTCACCAAGTCCACATTTTCGTCGCAATCGGCCAAGTCCTGACTATGGTCGACCTCGTAGCCCTGTTTATGATCGATATGATGGTCCAGCTTACGAGAGGCGTCGTAGTCCTGATTATATTCGATACCGCAGCCGATCACCAATTCGGAGGTCAAGAACTTGAAAGCTTCAAGCACTCATCACCAATTCGGATATGGAAATACTAGTCTAGTGTTCTCTTGAAATGAATCTAGTTTGAGAAATTTAGAATTTTGCAGTGTACTTACCTGTAATCAATATTCTGTGGAATACTTTGTTCTATATCTCTGTGAAAACATCAATGTGTTTGATTTACATTGTGAAATATTTATGGTGTTGATCTATATCTATGGTTTTGGTATCTTTATGCATTCTCGTTTTTTACTTTTCCTGTATTACAAATAATGGGGTTGTAATTTAAAGGCGAAATTCCGAAGTGTATGTGCTAATTCTGAGATCTTATCATTGGATGACTATTTGAAACTGCAATTGACATTCATTCATCCACAAAAAGTTCTTCATGCATGATGCATGTAATACAATGTTACAAACCTACATAAAAAGTCAGTAATTCTAAACAGATGGTGATCGAAGTTCCTGTTGAAGTGCTTTATCAAGCCACATTTCTGCATCTTCCATCATCCCAGGACTGAGCCTGACCATCAGAATACAAAACTCTTTCTCATTGAGCATCCCATCTCTATCAAGATCACCTTCTCTCACCATAGCTGCCGCGTCTTCACTACTCATCTCTCCCATTCCAAGCAAAGCCGAGTTCTTCCTCAAACTCTCGGACGTGATCATCCGTTTCTCGGGGTCAGCTAACAGCCTAAACCCAC

Coding sequence (CDS)

ATGAGGCCTGTTTTCGTCGGGAATTTTGAGTATGATACTCGTCAAAATGATCTCGAGCGACTTTTCTCCAAGTACGGCAGAGTTGATCGCGTTGATATGAAATCTGGGTTTGCTTTTGTTTACTTCGTTGATGAGCGTGATGCGGACGATGCCATTCGTGCTCTAGACAATGTTCCGTTTGGCCATGACAAACGCAGGCTGTCAGTGGAGTGGGCCAGGGGTGAAAGGGGCAAGGCCCGTGATGGATCCAAGGGAACAAGTCAGAGAGTTACTAAGACCTTATTTGTCATAAACTTTGATCAAATAAGAACACGTGACCGGGATCTAGAGAGACACTTTGAACCTTATGGAAAGATTTTGAGCGTCCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACTCAGGAAGATGCAACTAAGGCTCTTGAATGCACCAACATGAGCAAGCTGTTGGACAGGGTAATCTCAGTTGAATATGCCCTCCGTGATGACGACGAAAGAGATGACAGGCGTGCGCCGCGTGGCAGTCCAAGAGGTTATGGCCGGAGTCCTCTGCGTCGCTCACCAAGTCCACATTTTCGTCGCAATCGGCCAAGTCCTGACTATGGTCGACCTCGTAGCCCTGTTTATGATCGATATGATGGTCCAGCTTACGAGAGGCGTCGTAGTCCTGATTATATTCGATACCGCAGCCGATCACCAATTCGGAGGTCAAGAACTTGA

Protein sequence

MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRRSRT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo01222	Spo01222	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo01222.1	Spo01222.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01222.1.exon.1	Spo01222.1.exon.1	exon
Spo01222.1.exon.2	Spo01222.1.exon.2	exon
Spo01222.1.exon.3	Spo01222.1.exon.3	exon
Spo01222.1.exon.4	Spo01222.1.exon.4	exon
Spo01222.1.exon.5	Spo01222.1.exon.5	exon
Spo01222.1.exon.6	Spo01222.1.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01222.1.utr5p.1	Spo01222.1.utr5p.1	five_prime_UTR
Spo01222.1.utr5p.2	Spo01222.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01222.1.CDS.1	Spo01222.1.CDS.1	CDS
Spo01222.1.CDS.2	Spo01222.1.CDS.2	CDS
Spo01222.1.CDS.3	Spo01222.1.CDS.3	CDS
Spo01222.1.CDS.4	Spo01222.1.CDS.4	CDS
Spo01222.1.CDS.5	Spo01222.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01222.1.utr3p.1	Spo01222.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo01222.1 vs. NCBI nr
Match: gi|731311198|ref|XP_010694041.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 441.4 bits (1134), Expect = 1.000e-120
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVFVGNFEYDTRQ+DLERLFSKYGRV+RVDMKSGFAFVYF DERDADDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYDTRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDADDAIRGLDNAPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKIL 120
           G+DKRRLSVEWARGERGKARDG KG+S R TKTLFVINFD +RTRDRDLERHFEPYGK+L
Sbjct: 61  GYDKRRLSVEWARGERGKARDGPKGSSSRPTKTLFVINFDPVRTRDRDLERHFEPYGKVL 120

Query: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGSPRG 180
           SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR    GSPRG
Sbjct: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR---HGSPRG 180

Query: 181 YGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRRSR 240
           YGRSP RRSPSPH+RR+RPSPDYGRPRSPVYDRYDGPAYERRRSP+Y+RYRSRSPIRRSR
Sbjct: 181 YGRSPYRRSPSPHYRRSRPSPDYGRPRSPVYDRYDGPAYERRRSPEYVRYRSRSPIRRSR 238

Query: 241 T 242
           T
Sbjct: 241 T 238

[Close]

BLAST of Spo01222.1 vs. NCBI nr
Match: gi|902190563|gb|KNA11655.1| (hypothetical protein SOVF_132890 isoform A [Spinacia oleracea])

HSP 1 Score: 413.3 bits (1061), Expect = 2.900e-112
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


		  
Query: 35  SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL 94
           SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL
Sbjct: 44  SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL 103

Query: 95  FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR 154
           FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR
Sbjct: 104 FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR 163

Query: 155 VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY 214
           VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY
Sbjct: 164 VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY 223

Query: 215 DGPAYERRRSPDYIRYRSRSPIRRSRT 242
           DGPAYERRRSPDYIRYRSRSPIRRSRT
Sbjct: 224 DGPAYERRRSPDYIRYRSRSPIRRSRT 250

[Close]

BLAST of Spo01222.1 vs. NCBI nr
Match: gi|902190564|gb|KNA11656.1| (hypothetical protein SOVF_132890 isoform B [Spinacia oleracea])

HSP 1 Score: 409.1 bits (1050), Expect = 5.500e-111
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


		  
Query: 37  FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV 96
           FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV
Sbjct: 28  FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV 87

Query: 97  INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI 156
           INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI
Sbjct: 88  INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI 147

Query: 157 SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG 216
           SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG
Sbjct: 148 SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG 207

Query: 217 PAYERRRSPDYIRYRSRSPIRRSRT 242
           PAYERRRSPDYIRYRSRSPIRRSRT
Sbjct: 208 PAYERRRSPDYIRYRSRSPIRRSRT 232

[Close]

BLAST of Spo01222.1 vs. NCBI nr
Match: gi|747045466|ref|XP_011094143.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Sesamum indicum])

HSP 1 Score: 372.9 bits (956), Expect = 4.300e-100
Identity = 187/242 (77.27%), Postives = 215/242 (88.84%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRP+F GNFEY+TRQ+DLERLFSKYGRV+RVDMKSGFAFVYF DERDA+DAIR LDN+PF
Sbjct: 1   MRPIFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNIPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKIL 120
           G+D+RRLSVEWA+GERG+ RDG +  +QR TKTLFVINFD +RTR  D+ERHFEPYGK+L
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDG-RAANQRPTKTLFVINFDPVRTRVYDIERHFEPYGKVL 120

Query: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRR-APRGSPR 180
           +VRIRRNFAFVQFETQEDATKALECT+MSK+LDRV+SVEYALRDDDER     +PR S  
Sbjct: 121 NVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGGMHDSPRRSYG 180

Query: 181 GYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRRS 240
             G SP RRSPSP +RR+RPSPDYGR RSPVYDRY+GP+Y+R RSP+Y R+RSRSP+RRS
Sbjct: 181 RRGDSPNRRSPSPDYRRSRPSPDYGRARSPVYDRYNGPSYDRARSPEYGRHRSRSPVRRS 240

Query: 241 RT 242
           RT
Sbjct: 241 RT 241

[Close]

BLAST of Spo01222.1 vs. NCBI nr
Match: gi|661887514|emb|CDP08645.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 371.3 bits (952), Expect = 1.300e-99
Identity = 191/243 (78.60%), Postives = 213/243 (87.65%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVF GNFEY+TRQ+DLERLFSKYGRV+RVDMKSGFAFVYF DERDA+DAIR LDN PF
Sbjct: 1   MRPVFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNAPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKG-TSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKI 120
           GHD+RRLSVEWA+GERG+ RD S+   +QR TKTLFVINFD IRTR RD+ERHFEPYGK+
Sbjct: 61  GHDRRRLSVEWAKGERGRHRDSSRSMVNQRPTKTLFVINFDPIRTRIRDIERHFEPYGKV 120

Query: 121 LSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR-RAPRGSP 180
           L+VRIRRNFAFVQFETQEDATKALECT+MSK+LDRV+SVEYALRDD ER DR  +PR   
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDRYDSPRRDY 180

Query: 181 RGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRR 240
            G G SP RRSPSP +RR R SPDYG  RSPVYD+Y+GP YERRRSP+Y R+RSRSP+RR
Sbjct: 181 GGRGGSPYRRSPSPVYRRGRASPDYGHVRSPVYDKYNGP-YERRRSPEYDRHRSRSPVRR 240

Query: 241 SRT 242
           SRT
Sbjct: 241 SRT 242

[Close]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D7A6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002630 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 6.900e-121
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVFVGNFEYDTRQ+DLERLFSKYGRV+RVDMKSGFAFVYF DERDADDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYDTRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDADDAIRGLDNAPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKIL 120
           G+DKRRLSVEWARGERGKARDG KG+S R TKTLFVINFD +RTRDRDLERHFEPYGK+L
Sbjct: 61  GYDKRRLSVEWARGERGKARDGPKGSSSRPTKTLFVINFDPVRTRDRDLERHFEPYGKVL 120

Query: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGSPRG 180
           SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR    GSPRG
Sbjct: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR---HGSPRG 180

Query: 181 YGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRRSR 240
           YGRSP RRSPSPH+RR+RPSPDYGRPRSPVYDRYDGPAYERRRSP+Y+RYRSRSPIRRSR
Sbjct: 181 YGRSPYRRSPSPHYRRSRPSPDYGRPRSPVYDRYDGPAYERRRSPEYVRYRSRSPIRRSR 238

Query: 241 T 242
           T
Sbjct: 241 T 238

[Close]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWM8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132890 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.000e-112
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


		  
Query: 35  SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL 94
           SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL
Sbjct: 44  SGFAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTL 103

Query: 95  FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR 154
           FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR
Sbjct: 104 FVINFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDR 163

Query: 155 VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY 214
           VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY
Sbjct: 164 VISVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRY 223

Query: 215 DGPAYERRRSPDYIRYRSRSPIRRSRT 242
           DGPAYERRRSPDYIRYRSRSPIRRSRT
Sbjct: 224 DGPAYERRRSPDYIRYRSRSPIRRSRT 250

[Close]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYR7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132890 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 3.800e-111
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


		  
Query: 37  FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV 96
           FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV
Sbjct: 28  FAFVYFVDERDADDAIRALDNVPFGHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFV 87

Query: 97  INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI 156
           INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI
Sbjct: 88  INFDQIRTRDRDLERHFEPYGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVI 147

Query: 157 SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG 216
           SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG
Sbjct: 148 SVEYALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG 207

Query: 217 PAYERRRSPDYIRYRSRSPIRRSRT 242
           PAYERRRSPDYIRYRSRSPIRRSRT
Sbjct: 208 PAYERRRSPDYIRYRSRSPIRRSRT 232

[Close]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Match: A0A068UJD0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027680001 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 8.800e-100
Identity = 191/243 (78.60%), Postives = 213/243 (87.65%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVF GNFEY+TRQ+DLERLFSKYGRV+RVDMKSGFAFVYF DERDA+DAIR LDN PF
Sbjct: 1   MRPVFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNAPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKG-TSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKI 120
           GHD+RRLSVEWA+GERG+ RD S+   +QR TKTLFVINFD IRTR RD+ERHFEPYGK+
Sbjct: 61  GHDRRRLSVEWAKGERGRHRDSSRSMVNQRPTKTLFVINFDPIRTRIRDIERHFEPYGKV 120

Query: 121 LSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDR-RAPRGSP 180
           L+VRIRRNFAFVQFETQEDATKALECT+MSK+LDRV+SVEYALRDD ER DR  +PR   
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDRYDSPRRDY 180

Query: 181 RGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRR 240
            G G SP RRSPSP +RR R SPDYG  RSPVYD+Y+GP YERRRSP+Y R+RSRSP+RR
Sbjct: 181 GGRGGSPYRRSPSPVYRRGRASPDYGHVRSPVYDKYNGP-YERRRSPEYDRHRSRSPVRR 240

Query: 241 SRT 242
           SRT
Sbjct: 241 SRT 242

[Close]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Match: A0A022QY30_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012753mg PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.700e-99
Identity = 187/242 (77.27%), Postives = 209/242 (86.36%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRP+F GNF Y+TRQ+DLER FSKYGRVDRVDMKSGFAFVYF DERDA+DAIR LDN+PF
Sbjct: 1   MRPIFCGNFGYETRQSDLERAFSKYGRVDRVDMKSGFAFVYFDDERDAEDAIRGLDNLPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYGKIL 120
           G+DKRRLSVEWA+GERG+ R+  K  +QR TKTLFVINFD +RTRD D+ERHFEPYGK+L
Sbjct: 61  GYDKRRLSVEWAKGERGRHRE-EKAANQRPTKTLFVINFDPVRTRDSDIERHFEPYGKVL 120

Query: 121 SVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDD-RRAPRGSPR 180
           +VRIRRNFAFVQFE QE+ATKALECT+MSK+LDRV+SVEYALRDDDER     +PR S  
Sbjct: 121 NVRIRRNFAFVQFENQEEATKALECTHMSKILDRVVSVEYALRDDDERGGAHESPRRSYG 180

Query: 181 GYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRRSPDYIRYRSRSPIRRS 240
             G SP RRSPSP +RRNRPSPDYGRPRSPVYDRY GP+Y+R RSP Y RYRSRSP RR 
Sbjct: 181 RRGDSPRRRSPSPAYRRNRPSPDYGRPRSPVYDRYTGPSYDRPRSPAYGRYRSRSPARRM 240

Query: 241 RT 242
           RT
Sbjct: 241 RT 241

[Close]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 332.0 bits (850), Expect = 5.300e-90
Identity = 180/264 (68.18%), Postives = 202/264 (76.52%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVFVGNFEY+TRQ+DLERLF KYGRVDRVDMKSG+AFVYF DERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQ-RVTKTLFVINFDQIRTRDRDLERHFEPYGKI 120
           G++KRRLSVEWA+GERG+ R  +K  S  + TKTLFVINFD IRT++ D+E+HFEPYGK+
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGSPR 180
            +VRIRRNF+FVQFETQEDATKALE T  SK+LDRV+SVEYAL+DDDERDDR   R SPR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGR-SPR 180

Query: 181 GYGRSPLRRSPSPHFRR-------NRPSPDYGRPRSPVYDRYDGP-AYERRRSPD----- 240
                  RR PSP + R        RPSPDYGR RSP YDRY GP AYERRRSPD     
Sbjct: 181 RSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRS 240

[Close]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 7.400e-84
Identity = 172/259 (66.41%), Postives = 199/259 (76.83%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MR V+VGNF+YDTR +DLERLFSK+GRV RVDMKSG+AFVYF DERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDKRRLSVEWAR---GERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYG 120
           G+ +R+LSVEWA+   GERGK RDG   ++QR TKTLFVINFD IRTR+RD+ERHFEPYG
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120

Query: 121 KILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGS 180
           K+L+VR+RRNFAFVQF TQEDATKAL+ T+ SKLLD+V+SVEYALR+  ER+DR      
Sbjct: 121 KVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDR------ 180

Query: 181 PRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPA-YERRRSPDYIRY------ 240
              Y  S  RRSPSP +RR RPSPDY R RSP YDRY GPA YERR+SPDY R       
Sbjct: 181 ---YAGSRRRRSPSPVYRR-RPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGR 240

[Close]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.200e-70
Identity = 152/248 (61.29%), Postives = 183/248 (73.79%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           M+PVF GNFEYD R+ DLERLF KYG+V+RVDMK+GFAFVY  DERDA+DAIRALD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDKRRLSVEWARGERG---KARDGSK--GTSQRVTKTLFVINFDQIRTRDRDLERHFEP 120
           G   RRL VEW + ERG   ++  GS+   +S R +KTLFVINFD   TR RDLE+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPR 180
           YGKI++VRIRRNFAF+Q+E QEDAT+AL+ +N SKL+D+VISVEYA++DDD R +  +P 
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 181 GSPRGYGRSP--LRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRR-SPDYIRYRS 240
              R   RSP   RRSPSP ++R R SPDYGR  SPV       AY + R SPDY R RS
Sbjct: 181 ---RRRDRSPERRRRSPSP-YKRERGSPDYGRGASPV------AAYRKERTSPDYGRRRS 238

[Close]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 264.6 bits (675), Expect = 1.000e-69
Identity = 154/248 (62.10%), Postives = 184/248 (74.19%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           M+PVF GNFEYD R++DLERLF KYG+V+RVDMK+GFAFVY  DERDA+DAIRALD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDKRRLSVEWARGERGKA--RDGSKGTSQ--RVTKTLFVINFDQIRTRDRDLERHFEPY 120
           G   RRL VEW + +RG A    GS+ +S   R +KTLFVINFD   TR RDLERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRG 180
           GKI++VRIRRNFAF+Q+E QEDAT+AL+ TN SKL+D+VISVEYA++DDD R +  +P  
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPE- 180

Query: 181 SPRGYGRSP--LRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRR-SPDYIR-YRS 240
             R   RSP   RRSPSP +RR R SPDYGR  SPV       A++R R SPDY R  RS
Sbjct: 181 --RRRDRSPDRRRRSPSP-YRRERGSPDYGRGASPV-------AHKRERTSPDYGRGRRS 237

[Close]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-13
Identity = 83/259 (32.05%), Postives = 109/259 (42.08%), Query Frame = 1


		  
Query: 4   VFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSG----FAFVYFVDERDADDAIRALDNVP 63
           V+VGN   D R+ ++E +F KYGR+  VD+KSG    FAFV F D RDA+DA+RA D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 64  FGHDKRRLSVEWARGE---------------------RGKARDGSKGTSQRVTKTLFVIN 123
           F  D RR+ VE+ RG                      RG    G  G  QR T    ++ 
Sbjct: 71  F--DGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 124 FDQIRTRDRDLERHFEPYGKILSVRIRRN-FAFVQFETQEDATKALECTNMSKLLDRVIS 183
                   +DL+ H    G +    + R+    V+F   ED   A+   + +K       
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 190

Query: 184 VEY-ALRDDDERDDRRAPRGSPRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDG 236
             Y  +R+D+         G   G G     RS SP   R R SP Y    SP   R   
Sbjct: 191 TAYIRVREDNS-------SGGGSGGGGRDRSRSRSPRAER-RASPKY----SPRRSRSRS 250

[Close]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 332.0 bits (850), Expect = 3.000e-91
Identity = 180/264 (68.18%), Postives = 202/264 (76.52%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MRPVFVGNFEY+TRQ+DLERLF KYGRVDRVDMKSG+AFVYF DERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDKRRLSVEWARGERGKARDGSKGTSQ-RVTKTLFVINFDQIRTRDRDLERHFEPYGKI 120
           G++KRRLSVEWA+GERG+ R  +K  S  + TKTLFVINFD IRT++ D+E+HFEPYGK+
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGSPR 180
            +VRIRRNF+FVQFETQEDATKALE T  SK+LDRV+SVEYAL+DDDERDDR   R SPR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGR-SPR 180

Query: 181 GYGRSPLRRSPSPHFRR-------NRPSPDYGRPRSPVYDRYDGP-AYERRRSPD----- 240
                  RR PSP + R        RPSPDYGR RSP YDRY GP AYERRRSPD     
Sbjct: 181 RSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRS 240

[Close]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 311.6 bits (797), Expect = 4.200e-85
Identity = 172/259 (66.41%), Postives = 199/259 (76.83%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           MR V+VGNF+YDTR +DLERLFSK+GRV RVDMKSG+AFVYF DERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDKRRLSVEWAR---GERGKARDGSKGTSQRVTKTLFVINFDQIRTRDRDLERHFEPYG 120
           G+ +R+LSVEWA+   GERGK RDG   ++QR TKTLFVINFD IRTR+RD+ERHFEPYG
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120

Query: 121 KILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRGS 180
           K+L+VR+RRNFAFVQF TQEDATKAL+ T+ SKLLD+V+SVEYALR+  ER+DR      
Sbjct: 121 KVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDR------ 180

Query: 181 PRGYGRSPLRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPA-YERRRSPDYIRY------ 240
              Y  S  RRSPSP +RR RPSPDY R RSP YDRY GPA YERR+SPDY R       
Sbjct: 181 ---YAGSRRRRSPSPVYRR-RPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGR 240

[Close]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35)

HSP 1 Score: 267.7 bits (683), Expect = 7.000e-72
Identity = 152/248 (61.29%), Postives = 183/248 (73.79%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           M+PVF GNFEYD R+ DLERLF KYG+V+RVDMK+GFAFVY  DERDA+DAIRALD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDKRRLSVEWARGERG---KARDGSK--GTSQRVTKTLFVINFDQIRTRDRDLERHFEP 120
           G   RRL VEW + ERG   ++  GS+   +S R +KTLFVINFD   TR RDLE+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPR 180
           YGKI++VRIRRNFAF+Q+E QEDAT+AL+ +N SKL+D+VISVEYA++DDD R +  +P 
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 181 GSPRGYGRSP--LRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRR-SPDYIRYRS 240
              R   RSP   RRSPSP ++R R SPDYGR  SPV       AY + R SPDY R RS
Sbjct: 181 ---RRRDRSPERRRRSPSP-YKRERGSPDYGRGASPV------AAYRKERTSPDYGRRRS 238

[Close]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 264.6 bits (675), Expect = 5.900e-71
Identity = 154/248 (62.10%), Postives = 184/248 (74.19%), Query Frame = 1


		  
Query: 1   MRPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMKSGFAFVYFVDERDADDAIRALDNVPF 60
           M+PVF GNFEYD R++DLERLF KYG+V+RVDMK+GFAFVY  DERDA+DAIRALD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDKRRLSVEWARGERGKA--RDGSKGTSQ--RVTKTLFVINFDQIRTRDRDLERHFEPY 120
           G   RRL VEW + +RG A    GS+ +S   R +KTLFVINFD   TR RDLERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKILSVRIRRNFAFVQFETQEDATKALECTNMSKLLDRVISVEYALRDDDERDDRRAPRG 180
           GKI++VRIRRNFAF+Q+E QEDAT+AL+ TN SKL+D+VISVEYA++DDD R +  +P  
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPE- 180

Query: 181 SPRGYGRSP--LRRSPSPHFRRNRPSPDYGRPRSPVYDRYDGPAYERRR-SPDYIR-YRS 240
             R   RSP   RRSPSP +RR R SPDYGR  SPV       A++R R SPDY R  RS
Sbjct: 181 --RRRDRSPDRRRRSPSP-YRRERGSPDYGRGASPV-------AHKRERTSPDYGRGRRS 237

[Close]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-14
Identity = 92/272 (33.82%), Postives = 123/272 (45.22%), Query Frame = 1


		  
Query: 2   RPVFVGNFEYDTRQNDLERLFSKYGRVDRVDMK-----SGFAFVYFVDERDADDAIRALD 61
           R ++VGN   D R+ ++E LFSKYG V ++D+K      G+AFV F D RDADDAI   D
Sbjct: 7   RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66

Query: 62  NVPFGHDKRRLSVEWARGER-----------GKARDG---------SKGTSQRVTKTLFV 121
              F  D   L VE A G R           G+ R G          +G S+R    + V
Sbjct: 67  GYDF--DGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVV 126

Query: 122 INFDQIRTRDRDLERHFEPYGKILSVRI----RRNFAFVQFETQEDATKALECTNMSKLL 181
                  +  +DL+ H    G++   ++    R     V + + ED   AL+ T      
Sbjct: 127 SGLPSSASW-QDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDTEFR--- 186

Query: 182 DRVISVEYA-LRDDDERDDRRAP-RGSPRGYGRSPLR-RSPSPHFRRNRPSPDYGRPRSP 241
               S EY  +R+ D R D R+P RG  R Y +S  R RSPS    R+R      + RSP
Sbjct: 187 -NAFSHEYVRVREYDSRRDSRSPSRG--RSYSKSRSRGRSPSRSRSRSR---SRSKSRSP 246

The following BLAST results are available for this feature:

BLAST of Spo01222.1 vs. NCBI nr
BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
BLAST of Spo01222.1 vs. TAIR (Arabidopsis)

BLAST of Spo01222.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731311198\|ref\|XP_010694041.1\|	1.0e-120	90.8	PREDICTED: serine/arginine-ric...	[more]
gi\|902190563\|gb\|KNA11655.1\|	2.9e-112	100.	hypothetical protein SOVF_1328...	[more]
gi\|902190564\|gb\|KNA11656.1\|	5.5e-111	100.	hypothetical protein SOVF_1328...	[more]
gi\|747045466\|ref\|XP_011094143.1\|	4.3e-100	77.2	PREDICTED: serine/arginine-ric...	[more]
gi\|661887514\|emb\|CDP08645.1\|	1.3e-99	78.6	unnamed protein product [Coffe...	[more]

BLAST of Spo01222.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8D7A6_BETVU	6.9e-121	90.8	Uncharacterized protein OS=Bet...	[more]
A0A0K9QWM8_SPIOL	2.0e-112	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QYR7_SPIOL	3.8e-111	100.	Uncharacterized protein OS=Spi...	[more]
A0A068UJD0_COFCA	8.8e-100	78.6	Uncharacterized protein OS=Cof...	[more]
A0A022QY30_ERYGU	5.7e-99	77.2	Uncharacterized protein OS=Ery...	[more]

BLAST of Spo01222.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SRS31_ARATH	5.3e-90	68.1	Serine/arginine-rich splicing ...	[more]
RS31A_ARATH	7.4e-84	66.4	Serine/arginine-rich splicing ...	[more]
RS40_ARATH	1.2e-70	61.2	Serine/arginine-rich splicing ...	[more]
SRS41_ARATH	1.0e-69	62.1	Serine/arginine-rich splicing ...	[more]
RSP3_CAEEL	1.4e-13	32.0	Probable splicing factor, argi...	[more]

BLAST of Spo01222.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G61860.1	3.0e-91	68.1	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G46610.1	4.2e-85	66.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G25500.1	7.0e-72	61.2	arginine/serine-rich splicing ...	[more]
AT5G52040.2	5.9e-71	62.1	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G02430.2	2.3e-14	33.8	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..61 score: 1.4E-15coord: 94..156 score: 9.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 93..159 score: 1.2E-17coord: 3..70 score: 5.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..74 score: 17.353coord: 92..163 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 2..76 score: 1.9E-19coord: 86..168 score: 2.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 2..167 score: 2.43
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 4..168 score: 7.7E-40coord: 191..219 score: 7.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding