Spo17924.1 (mRNA) | SpinachBase

Overview


Name	Spo17924.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase (2.7.7.6)
Location	chr2 : 19161043 .. 19163228 (+)
Sequence length	762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGTATTTGTGCAAATAGATATAATCCATGGAATCACAAAACCTATCAAAATGAAAGAATTGATGATACTAATTATAAGTCTATGAAAGAACCCTTTTTTTGTAATTTCTATGATGCAATTGGAGCTTATCGTCAGAAAAGAATTCATTTAGATAGCCCTTTGTGGCTCCGGTGGCAACTAGATCAACGCATTATTGCTTCAAAAGAAGCTCCCATTGAAGTTCACTATGAATCTTTGGGCACCTATCATGAGATTTATGCGCACTATCTAATAATAAGAAGTGTAAAAAAAGAAATTATTGATATATATATTCGAACTACTGTTGGTCATATTTCTCTTTATCGAGAAATTGAAGAAGCTATACAAGGATTTTATCAAGCCTGCTCATAAAGTACTTAATCATATTTGGCGAATTCGAGTCTTTCAGGTTCAACTAGGATTATAATTTTTGAATTTTTAGGTCAATTAAGATCAAGAAAAGGAAGTTTTCTAATCACTAACTCAATCCCATTCATTGTCGAATCCTACTCAGCAGAATATGGAGGTACTTATGGCAGAACGGGCCAATTTGGTCTTTCACAATAAAGCGATAGATGGAACTGCCATGAAACGACTTATTAGTAGATTAATAGATCATTTTGGAATGGCATATACGTCACACATCCTAGATCAACTAAAGACTCTGGGTTTCCAGCAAGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAGCAAAGTTTGATTTTGGAAAAACACCACCATTATGGGAATGTACACGCGGTAGAAAAATTACGTCAATCCATTGAGATATGGTATTCTACAAGTGAATATTTGCGACAAGAAATGAATCCCAATTTTAGGATGACTGACCCTTATAATCCAGTCCATATAATGTCTTTTTCGGGAGCTAGAGGAAATGTGTCTCAGGTACATCAATTAGTAGGTATGAGAGGATTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGGGAAGGACTCTCTTTAACAGAATATATAATTTCTTGTTACGGAGCCCGCAAAGGGGTTGTGGATACTGCTGTACGAACATCCGATGCTGGATATCTCACGCGCAGGCTTGTCGAAGTAGTTCAACATATTGTTGTGCGTAGAAGAGATTGTGGCACCATTCGAGGTATTTCTGTAAGTCCTCAAAACAGTACGATGCCGGAAAGAATTTTGATCCAAACATTAATTGGTCGTGTATTAGCAGACGATATATATATGGGTTCACGATGCATTGCCACCCGAAATCAAGATATCGGGGTTGGACTTGTCAATCGATTCATAACGCTTCGAACCCAACTAATATCCATCCGAACTCCTTTTACTTGTAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

mRNA sequence

ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTAGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGTGGCCAGCCAATGAGGGATGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAGGGTAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGACGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACACCGATGTGGATTGCCTCGTGAAATTGCAATAGAGCTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTTCGAACATAGGAGTTGCTAAGCGTAAAATTCGGGAAAAAGAGCCGATTGTATGGAAAATACTGCAGGAAGTTATGCAGGGGCATCCTGTATTATTAAATAGAGCACCTACTCTTCATAGATTAGGTATACAGGCGTTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCGTTAGTTTGTAAAGGATTCAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGCGATCCCATTTCCGTACCAACCCAAGATATGCTTATTGGACTCTATATATTAACGAGCGGGAATCGTCGAGGAGTGCGTCTTGGATCTGTCGATTATGTTATGGCCGGAGTCCTACTCACGGCGGCCTGGTTGAATTGGGAGAAGCTGTAG

Protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGVRLGSVDYVMAGVLLTAAWLNWEKL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17924	Spo17924	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17924.1	Spo17924.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17924.1.exon.1	Spo17924.1.exon.1	exon
Spo17924.1.exon.2	Spo17924.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17924.1.CDS.1	Spo17924.1.CDS.1	CDS
Spo17924.1.CDS.2	Spo17924.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo17924.1 vs. NCBI nr
Match: gi|11497515|ref|NP_054923.1| (RNA polymerase beta' subunit [Spinacia oleracea])

HSP 1 Score: 462.6 bits (1189), Expect = 4.400e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. NCBI nr
Match: gi|1020267075|gb|AMZ03426.1| (DNA-directed RNA polymerase subunit gamma (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 462.6 bits (1189), Expect = 4.400e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. NCBI nr
Match: gi|836613821|ref|YP_009143630.1| (RNA polymerase beta subunit (chloroplast) [Salicornia brachiata])

HSP 1 Score: 462.2 bits (1188), Expect = 5.700e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. NCBI nr
Match: gi|836642794|ref|YP_009143798.1| (RNA polymerase beta subunit (chloroplast) [Salicornia bigelovii])

HSP 1 Score: 462.2 bits (1188), Expect = 5.700e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. NCBI nr
Match: gi|910354308|ref|YP_009160793.1| (RNA polymerase beta (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 461.8 bits (1187), Expect = 7.500e-127
Identity = 226/229 (98.69%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNK+YKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKIYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A159ZRP9_9CARY (DNA-directed RNA polymerase subunit gamma OS=Bienertia sinuspersici GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 3.100e-127
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXT8_SALEU (DNA-directed RNA polymerase subunit OS=Salicornia europaea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXJ2_SALBI (DNA-directed RNA polymerase subunit OS=Salicornia bigelovii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QX55_9CARY (DNA-directed RNA polymerase subunit OS=Salicornia brachiata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.000e-127
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEP+VWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPVVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K865_9CARY (DNA-directed RNA polymerase subunit OS=Haloxylon ammodendron GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 5.200e-127
Identity = 226/229 (98.69%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNK+YKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKIYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.700e-129
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.200e-127
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH+ASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSGNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 456.4 bits (1173), Expect = 2.000e-127
Identity = 223/229 (97.38%), Postives = 227/229 (99.13%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQ EARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSGNRRG+
Sbjct: 502 SLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.600e-127
Identity = 222/229 (96.94%), Postives = 228/229 (99.56%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 325 MCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 384

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK KIREKEPIVW+IL
Sbjct: 385 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKNKIREKEPIVWEIL 444

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 445 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 504

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML+GLY+LTSGNRRG+
Sbjct: 505 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGI 553

[Close]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 3.400e-127
Identity = 222/229 (96.94%), Postives = 227/229 (99.13%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG+AK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LT GNRRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGI 550

[Close]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 450.3 bits (1157), Expect = 7.900e-127
Identity = 220/229 (96.07%), Postives = 226/229 (98.69%), Query Frame = 1


		  
Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK +IREK+PIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGV 230
           SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY+LTSG RRG+
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGI 550

[Close]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT5G60040.2 (nuclear RNA polymerase C1)

HSP 1 Score: 109.8 bits (273), Expect = 2.500e-24
Identity = 68/208 (32.69%), Postives = 108/208 (51.92%), Query Frame = 1


		  
Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 356 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 415

Query: 99  QTFVIRGLIRQHLASNI-----------GVAKRKIREKEPIVWKILQEVMQGHPVLLNRA 158
           +  V  G  +   A N+           G  +++I ++  I   + + + +G  VL NR 
Sbjct: 416 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 475

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 476 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 535

Query: 219 HMNLLSPAIGDPISVPTQDMLIGLYILT 223
             NL +P  G+ +   TQD L   +++T
Sbjct: 536 QNNLCTPKNGEILVASTQDFLTSSFLIT 563

[Close]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 107.5 bits (267), Expect = 1.300e-23
Identity = 70/245 (28.57%), Postives = 114/245 (46.53%), Query Frame = 1


		  
Query: 5   KLVQEAVDTLLDNGIRGQPMRDGHN-KVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 64
           +L+Q  + T  DN + GQP     + +  KS    ++ KEGR R  L+GKRVD+S R+VI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 65  VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLAS----------------------- 124
              P++++   G+P  IA+ L     +     + L                         
Sbjct: 365 TPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424

Query: 125 ---NIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 184
              ++   K+   +   + +K+ + +  G  VL NR P+LH++ I   +  ++      L
Sbjct: 425 QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRL 484

Query: 185 HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIG 223
           +  V   +NADFDGD+M +HVP S E +AE   LM     ++SP    P+    QD L+G
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLG 544

[Close]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-15
Identity = 55/191 (28.80%), Postives = 95/191 (49.74%), Query Frame = 1


		  
Query: 47  RETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASN----- 106
           ++ LLGKR D++ R+V+V  PSL L+  G+P  IA  L  +  +    ++ L ++     
Sbjct: 310 KDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTL 369

Query: 107 IGVAKRKIREKEPIVW----------KILQEVMQGHPVLLNRAPTLHRLGIQAFQP-ILV 166
           +   +  +R  + +V           KI + +M G  VL+NR P++H+  + A    IL 
Sbjct: 370 LDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILP 429

Query: 167 EGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVP 222
               + L+P+ C  F  DFDGD +  +VP S++A+ E   L+     L++   G  +   
Sbjct: 430 TTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489

[Close]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 72.4 bits (176), Expect = 4.500e-13
Identity = 67/232 (28.88%), Postives = 103/232 (44.40%), Query Frame = 1


		  
Query: 11  VDTLLD-----NGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVV 70
           VDT L         R   MR G +K+  S S   +    + R   + K   +S RSVI  
Sbjct: 273 VDTYLQVRGTAKAARNIDMRYGVSKISDSSSS--KAWTEKMRTLFIRKGSGFSSRSVITG 332

Query: 71  GPSLSLHRCGLPREIAIEL-FQTFVI---RGLIRQHLASNI------GVAKRKIRE--KE 130
                ++  G+P EIA  + F+  V    RG +++ +   +      G     +R+  K 
Sbjct: 333 DAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGSTTYSLRDGSKG 392

Query: 131 PIVWK----ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 190
               K    + + VM G  V +NR PT H+  +QA +  + E   + ++PL+C   +ADF
Sbjct: 393 HTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADF 452

Query: 191 DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYIL 222
           DGD + +  P SL A+AE   L      LLS   G  I     D L+ L ++
Sbjct: 453 DGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 502

The following BLAST results are available for this feature:

BLAST of Spo17924.1 vs. NCBI nr
BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
BLAST of Spo17924.1 vs. TAIR (Arabidopsis)

BLAST of Spo17924.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|11497515\|ref\|NP_054923.1\|	4.4e-127	99.5	RNA polymerase beta' subunit [...	[more]
gi\|1020267075\|gb\|AMZ03426.1\|	4.4e-127	99.5	DNA-directed RNA polymerase su...	[more]
gi\|836613821\|ref\|YP_009143630.1\|	5.7e-127	99.1	RNA polymerase beta subunit (c...	[more]
gi\|836642794\|ref\|YP_009143798.1\|	5.7e-127	99.1	RNA polymerase beta subunit (c...	[more]
gi\|910354308\|ref\|YP_009160793.1\|	7.5e-127	98.6	RNA polymerase beta (chloropla...	[more]

BLAST of Spo17924.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A159ZRP9_9CARY	3.1e-127	99.5	DNA-directed RNA polymerase su...	[more]
A0A0G2QXT8_SALEU	4.0e-127	99.1	DNA-directed RNA polymerase su...	[more]
A0A0G2QXJ2_SALBI	4.0e-127	99.1	DNA-directed RNA polymerase su...	[more]
A0A0G2QX55_9CARY	4.0e-127	99.1	DNA-directed RNA polymerase su...	[more]
A0A0K0K865_9CARY	5.2e-127	98.6	DNA-directed RNA polymerase su...	[more]

BLAST of Spo17924.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RPOC1_SPIOL	2.7e-129	99.5	DNA-directed RNA polymerase su...	[more]
RPOC1_BUXMI	1.2e-127	97.8	DNA-directed RNA polymerase su...	[more]
RPOC1_ATRBE	2.0e-127	97.3	DNA-directed RNA polymerase su...	[more]
RPOC1_COFAR	2.6e-127	96.9	DNA-directed RNA polymerase su...	[more]
RPOC1_ACOCL	3.4e-127	96.9	DNA-directed RNA polymerase su...	[more]

BLAST of Spo17924.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
ATCG00180.1	7.9e-127	96.0	DNA-directed RNA polymerase fa...	[more]
AT5G60040.2	2.5e-24	32.6	nuclear RNA polymerase C1	[more]
AT4G35800.1	1.3e-23	28.5	RNA polymerase II large subuni...	[more]
AT1G63020.1	1.3e-15	28.8	nuclear RNA polymerase D1A	[more]
AT2G40030.1	4.5e-13	28.8	nuclear RNA polymerase D1B	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 106..192 score: 1.8E-27coord: 52..101 score: 2.
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..222 score: 1.6E
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 197..224 score: 1.
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 3..50 score: 2.1
None	No IPR available	GENE3D	2.40.40.20		coord: 57..84 score: 7.9E-39coord: 125..196 score: 7.9
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..230 score: 4.2E
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..226 score: 5.72E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity