Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTGAAATAATACTCCTGCAATCTGATCTCATCTTTAGATATAGATGGCATTGGCCGGTGGTATTATGCACAATATGTCCCTGTTGTTACTGGAATTTTTGGCCCACGAATTCGAAGCCGTAGCTTAGCACAACACATGAAACCTAATACTATAAATATATAGGATATATATTTTCTGTGTACATTAATTTTCAGGATATTTAAGGTTATGAATTGCTAAACATAGCCTTACCATCATTTCTATATAATAATAATGAGCTAATTTAAAAATAAGTGGCAAGGAAACACAGAAAAGGGTAGCCTTTGATATTTAGGCTATAATAATACAATTATTTTAGAGAGTTTTTTTTTTCTGTTTGTGATTCTGAAATAAGCTAGGTACAAAAACACAATGATTTCGTCTTCACCTCTAGCTGTATTCGTGTTTTATGCTACTCTCATGTTGATTGGTGCCTTTGCCTCAGACTCAGGTAATCTCTCTTTCTCTTACGTACGTCCCCTTGTCAGTTGTCTCGATCAACTGCTACATGATAATAATTGGTTACATGAAACAGAGTACAAATATTCAGAAACAGATAAATGGGGAAGCATTGACCCACGCTATGCAGTTTGCTCGACAGGCAAGAGGCAATCCCCCATTAATATAAAAACCAATGACGTGGTTGTGAACAAAACAATGCAACACTTGACCAGAAACTACCATGTTTACAATGCTACATTGTGCACTGATGGCATTGATGTTCAGGTAATCTAATTTTTCCTTAATTTCTAAATTCTATCTTCATTCCTCAAGTTTATTAAACAATAAACATGATATGTGATCCAGGTTTCTTTTAGTGCAAGAGGAGACTTGATAATTGATGGCGAGACTTACAAATTGAAGCAGATGCATTGGCATACTCCTTCTGAGCACCGCCTTAACGGTGTCCAGTAAGACTTAAGTTATGAGTTTTTGACATACGGAGTAGTATTTTTTAAAAATGAAATTGACGAATTTTTGTTTGAATTTACGTACGTGGGAGCGTTATGAAGATATGCGGCAGAGCTACACCAAGTACATGCAGCTGATGATGGCAAGCGGGCAGTTGTCGGGGTCTTTTTCAAGTATGGCAAACCTGATCCTGTTCTCACCATGGTACGTAGTATGCATATATATATATACATAATATATTTTCTTATACACCTAAATCCTAATGTGCTATTGTTTTTTTGGTTTGATGTGAATGGATTTCAGCTAAAACCAGAATTGGATGAACTAGCTAAGGAACCTTGTCAACGTAAAGAAAGAAAGGTTGATATCCCAATGTTTGACTCAAGCTTCTTGAAGAGATGGCCCCGCAAATATTACAGATATCCTGGGTCTCTTACTACTCCTCCCTGTGATGAGAATGTCATTTGGAATGTTCTTTCCAAGGTATCTACATTATTAATTAACACATTCCCTTGTGTATCTTCAAACCAACAATTATCTACATTACTTCATACGCCATAATCTTACTCCCCCGTTTCGAACTGATTGTCATATACGAGGTACACAATATCAACAAACTCCAAACATGCATACATGCCACCGTGTCACAATTATAATTGCGACTTTTATCCTTATAAATAACCTTTTATAGTGAAATATTTCATTTCCATGATGATCGATGGCCAGTTGAGACAAAATTAGTAAAAGTGAAGGCCGTTAGATGTACACTTGCAACAATAAGAACTCGGCGGTTAGGCTGTTAAATTTGTTATCATATTTCCCTAATTCTAGACATTAATTATTAACTTTTCTTTACTTAATACAATTTAAATTGTGAGTGACTATTTTATACAAGTTCCCTTATAAAATAAAATAGAGAATTACTAGCTCAAATAATTGGTCTTATTCTATTTTGACTGTTGACTAAATTTTTTAGGTGAAAACGATTTCAAAGGATCAAGTTGAAGCTTTAAAGGCTCCTCTTTGTGAGGCCTATAAAATCAAGAATGCTAGGCCTACACAACCGCTTAATGGAAGGAAAGTCCAAACTTATGA AGTGAAATAATACTCCTGCAATCTGATCTCATCTTTAGATATAGATGGCATTGGCCGGTGGTATTATGCACAATATGTCCCTGTTGTTACTGGAATTTTTGGCCCACGAATTCGAAGCCGTAGCTTAGCACAACACATGAAACCTAATACTATAAATATATAGGATATATATTTTCTGTGTACATTAATTTTCAGGATATTTAAGGTTATGAATTGCTAAACATAGCCTTACCATCATTTCTATATAATAATAATGAGCTAATTTAAAAATAAGTGGCAAGGAAACACAGAAAAGGGTAGCCTTTGATATTTAGGCTATAATAATACAATTATTTTAGAGAGTTTTTTTTTTCTGTTTGTGATTCTGAAATAAGCTAGGTACAAAAACACAATGATTTCGTCTTCACCTCTAGCTGTATTCGTGTTTTATGCTACTCTCATGTTGATTGGTGCCTTTGCCTCAGACTCAGAGTACAAATATTCAGAAACAGATAAATGGGGAAGCATTGACCCACGCTATGCAGTTTGCTCGACAGGCAAGAGGCAATCCCCCATTAATATAAAAACCAATGACGTGGTTGTGAACAAAACAATGCAACACTTGACCAGAAACTACCATGTTTACAATGCTACATTGTGCACTGATGGCATTGATGTTCAGGTTTCTTTTAGTGCAAGAGGAGACTTGATAATTGATGGCGAGACTTACAAATTGAAGCAGATGCATTGGCATACTCCTTCTGAGCACCGCCTTAACGGTGTCCAATATGCGGCAGAGCTACACCAAGTACATGCAGCTGATGATGGCAAGCGGGCAGTTGTCGGGGTCTTTTTCAAGTATGGCAAACCTGATCCTGTTCTCACCATGCTAAAACCAGAATTGGATGAACTAGCTAAGGAACCTTGTCAACGTAAAGAAAGAAAGGTTGATATCCCAATGTTTGACTCAAGCTTCTTGAAGAGATGGCCCCGCAAATATTACAGATATCCTGGGTCTCTTACTACTCCTCCCTGTGATGAGAATGTCATTTGGAATGTTCTTTCCAAGGTGAAAACGATTTCAAAGGATCAAGAAAGTCCAAACTTATGA ATGATTTCGTCTTCACCTCTAGCTGTATTCGTGTTTTATGCTACTCTCATGTTGATTGGTGCCTTTGCCTCAGACTCAGAGTACAAATATTCAGAAACAGATAAATGGGGAAGCATTGACCCACGCTATGCAGTTTGCTCGACAGGCAAGAGGCAATCCCCCATTAATATAAAAACCAATGACGTGGTTGTGAACAAAACAATGCAACACTTGACCAGAAACTACCATGTTTACAATGCTACATTGTGCACTGATGGCATTGATGTTCAGGTTTCTTTTAGTGCAAGAGGAGACTTGATAATTGATGGCGAGACTTACAAATTGAAGCAGATGCATTGGCATACTCCTTCTGAGCACCGCCTTAACGGTGTCCAATATGCGGCAGAGCTACACCAAGTACATGCAGCTGATGATGGCAAGCGGGCAGTTGTCGGGGTCTTTTTCAAGTATGGCAAACCTGATCCTGTTCTCACCATGCTAAAACCAGAATTGGATGAACTAGCTAAGGAACCTTGTCAACGTAAAGAAAGAAAGGTTGATATCCCAATGTTTGACTCAAGCTTCTTGAAGAGATGGCCCCGCAAATATTACAGATATCCTGGGTCTCTTACTACTCCTCCCTGTGATGAGAATGTCATTTGGAATGTTCTTTCCAAGGTGAAAACGATTTCAAAGGATCAAGAAAGTCCAAACTTATGA MISSSPLAVFVFYATLMLIGAFASDSEYKYSETDKWGSIDPRYAVCSTGKRQSPINIKTNDVVVNKTMQHLTRNYHVYNATLCTDGIDVQVSFSARGDLIIDGETYKLKQMHWHTPSEHRLNGVQYAAELHQVHAADDGKRAVVGVFFKYGKPDPVLTMLKPELDELAKEPCQRKERKVDIPMFDSSFLKRWPRKYYRYPGSLTTPPCDENVIWNVLSKVKTISKDQESPNL Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo24138.1 vs. NCBI nr
Match: gi|902127670|gb|KNA04143.1| (hypothetical protein SOVF_202430 [Spinacia oleracea]) HSP 1 Score: 471.5 bits (1212), Expect = 8.600e-130 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1
BLAST of Spo24138.1 vs. NCBI nr
Match: gi|731345056|ref|XP_010683725.1| (PREDICTED: alpha carbonic anhydrase 1, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 339.3 bits (869), Expect = 5.100e-90 Identity = 162/229 (70.74%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Spo24138.1 vs. NCBI nr
Match: gi|870855035|gb|KMT06783.1| (hypothetical protein BVRB_7g159420 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 315.5 bits (807), Expect = 7.900e-83 Identity = 147/188 (78.19%), Postives = 165/188 (87.77%), Query Frame = 1
BLAST of Spo24138.1 vs. NCBI nr
Match: gi|731345052|ref|XP_010683723.1| (PREDICTED: alpha carbonic anhydrase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 235.3 bits (599), Expect = 1.000e-58 Identity = 114/184 (61.96%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo24138.1 vs. NCBI nr
Match: gi|870855033|gb|KMT06781.1| (hypothetical protein BVRB_7g159400 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 235.3 bits (599), Expect = 1.000e-58 Identity = 114/184 (61.96%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202430 PE=4 SV=1) HSP 1 Score: 471.5 bits (1212), Expect = 6.000e-130 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C3Z0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159420 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 5.500e-83 Identity = 147/188 (78.19%), Postives = 165/188 (87.77%), Query Frame = 1
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EUA9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159400 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 7.300e-59 Identity = 114/184 (61.96%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Match: W9RFT7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015378 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 7.800e-53 Identity = 115/236 (48.73%), Postives = 153/236 (64.83%), Query Frame = 1
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Match: A0A022RF51_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011347mg PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.700e-52 Identity = 100/239 (41.84%), Postives = 155/239 (64.85%), Query Frame = 1
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Match: ATCA1_ARATH (Alpha carbonic anhydrase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=2) HSP 1 Score: 186.0 bits (471), Expect = 4.500e-46 Identity = 90/196 (45.92%), Postives = 126/196 (64.29%), Query Frame = 1
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Match: ATCA7_ARATH (Alpha carbonic anhydrase 7 OS=Arabidopsis thaliana GN=ACA7 PE=2 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.200e-40 Identity = 82/214 (38.32%), Postives = 129/214 (60.28%), Query Frame = 1
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Match: ATCA2_ARATH (Alpha carbonic anhydrase 2 OS=Arabidopsis thaliana GN=ACA2 PE=2 SV=2) HSP 1 Score: 159.5 bits (402), Expect = 4.600e-38 Identity = 81/190 (42.63%), Postives = 115/190 (60.53%), Query Frame = 1
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Match: NEC3_NICLS (Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.100e-36 Identity = 88/226 (38.94%), Postives = 133/226 (58.85%), Query Frame = 1
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Match: ATCA4_ARATH (Alpha carbonic anhydrase 4 OS=Arabidopsis thaliana GN=ACA4 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 8.000e-35 Identity = 78/193 (40.41%), Postives = 112/193 (58.03%), Query Frame = 1
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Match: AT3G52720.1 (alpha carbonic anhydrase 1) HSP 1 Score: 186.0 bits (471), Expect = 2.600e-47 Identity = 90/196 (45.92%), Postives = 126/196 (64.29%), Query Frame = 1
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Match: AT1G08080.1 (alpha carbonic anhydrase 7) HSP 1 Score: 167.2 bits (422), Expect = 1.200e-41 Identity = 82/214 (38.32%), Postives = 129/214 (60.28%), Query Frame = 1
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Match: AT2G28210.1 (alpha carbonic anhydrase 2) HSP 1 Score: 159.5 bits (402), Expect = 2.600e-39 Identity = 81/190 (42.63%), Postives = 115/190 (60.53%), Query Frame = 1
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Match: AT4G20990.1 (alpha carbonic anhydrase 4) HSP 1 Score: 148.7 bits (374), Expect = 4.500e-36 Identity = 78/193 (40.41%), Postives = 112/193 (58.03%), Query Frame = 1
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Match: AT1G08065.1 (alpha carbonic anhydrase 5) HSP 1 Score: 148.3 bits (373), Expect = 5.900e-36 Identity = 77/216 (35.65%), Postives = 118/216 (54.63%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24138.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24138.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24138.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo24138.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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