Spo12325.1 (mRNA)

Overview
NameSpo12325.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01190 : 64292 .. 66456 (-)
Sequence length534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGGTTTGTACCTTGATTTTTGTTTAACATTTTTTTTTCCAACTATGAAACCTAGGGATTATGCTCTATTGAAATTTGTAAAGAGCAATCCACCCGCATTATGAATGAATTTCTCCGAGGGCATAAAATCACCATGGTTAGTATGCTTGATTTTTTTTTTTTTTTTTTTTATAATAAAAATGGCCATTTTATAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGGTAATTTACAGGACTTATATTTTTTTGATTATCTTTGTCTATGAAAGGAGGAAAAGATACATTACTCTTTGACTTTAGATTGTAGTGGAGTACAAACAAAAATAGTTTATCTTTACTATAGTGAAACATACACTATTCAGTGACCTATATCTATTTGTATTTTGCAGCTTTCCTCAGCTAATATACATAACAGTTAACACCAGTATTCGGTCATTAAATTTATATTGTAAATTTGTAATAGTTCTTGATTTTTATGGATCTCAATTGACGATAGTCTCGAAGTTGGCGATACAATGATGACTGATTTATTATTTCAGGGTAAGATGTAAAATCTCCTGGGATGTATGGGCTAAACACTTGTTTGTGTAGGATGGAGGACCTTTTGACTTTAGCCATGACTCATGTGTTTGTGAAGTTTTGATTGTGTGGAAGGAGTTTTTGATTTGTGAATATAACTTATATAAGAAGGGCAGTAAGCCAGTAATAAAGTTGAATTAAACTGATTTCAATTAGATTAGATCGAATTTAAATGAAGAAGCTGAATAGAAGAAATTTTGGTCAAATTAAACTTAAACTAAATAAATTAGGTTGAATTAAATTGATACCGACTCAAGGGTAGAATTGGGGAAATAAAATTCAAGAAAGTGTGTGGAAGGGAAAACTGAAGACATCTGCTTAAAAGAACCCCAGATGAGACCCCGAGAAGGACATGTCTGGGGAAAAACCATGGTTGAACTGTTTAAAAGAACATATTATTGTGTGTTTAATCACATTGTAAGACACCGCTATGACACGGAGTAAGATAAAGAAACAGGGGGGTAAGGGAAAACTAAGAGACTAAGATATTCCATATTGGGATGGGGTATGCTTTGAATGAAAAGTAGTTCAGTGCCTTTGTTAGTACAATTCCATTCTTAATGCGTCTTGATCAAAATGCATCTAATAATTGTAAATGCCAATATAATGGTGAATGGTTTGTTGAACCTAGATTCTTGTTGGAGGCATCTTGCTCCCTTTAATTTATATGATTTCTTTTCTGATTAAAACAATTCCTTCTTACTGTTAAAAAAAGAGAGGAGAAGTTCACATATCAGTTGATCGTATTAAGCAATTTCAATCTAGAAATGGCCTCAAAATAAATTTCTAATTCAGTACATAATGAAAGATCGAAAGGTGTGGTTATTTTCTAGATGTTGTGAAACAATGGTTTCATTACTGGTTATTTGTTTTCTTTCAGATGTAACTGTTTTTTAAGCTTGGTGTCATGTAGTTTTTACACTTTATTTGCACGTCTTCACTCTTATTATTTCTAAAGGGACATGTTTATTTTTTGCAATATTGTGTTTTTTTTAGTCTATTTTGTCTTCATCGTCCATTCTTGCTTGTGCATTTGCCTTTTGTTCCTTATCTGACTTTGAAACTTAGTGTGTTTTGGTGTAGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

mRNA sequence

ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

Coding sequence (CDS)

ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

Protein sequence

MINEVFNRRSPLLFQPPATTASLNAATEPQRLLVYEVVLLCKQAEILLASGLFVTQRIKLRHGGGSGDSCGRGGYNIDYSNPNTSKRANLKLLFLQYCYDRIAPASHSLLLVCPCKEIMPRSVIPASVLLFFFLSPLFPVSVLQQTLTLLIFPPSPLDPLSPYCIVLPCYIHLLTNN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12325Spo12325gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12325.1Spo12325.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12325.1.CDS.3Spo12325.1.CDS.3CDS
Spo12325.1.CDS.2Spo12325.1.CDS.2CDS
Spo12325.1.CDS.1Spo12325.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12325.1.exon.3Spo12325.1.exon.3exon
Spo12325.1.exon.2Spo12325.1.exon.2exon
Spo12325.1.exon.1Spo12325.1.exon.1exon


Homology
[Close]
BLAST of Spo12325.1 vs. NCBI nr
Match: gi|902235167|gb|KNA23789.1| (hypothetical protein SOVF_021990 isoform A [Spinacia oleracea])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. NCBI nr
Match: gi|902235168|gb|KNA23790.1| (hypothetical protein SOVF_021990 isoform B [Spinacia oleracea])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW80_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_021990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.000e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RY00_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_021990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.000e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
The following BLAST results are available for this feature:
BLAST of Spo12325.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902235167|gb|KNA23789.1|5.8e-9100.hypothetical protein SOVF_0219... [more]
gi|902235168|gb|KNA23790.1|5.8e-9100.hypothetical protein SOVF_0219... [more]
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BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RW80_SPIOL4.0e-9100.Uncharacterized protein OS=Spi... [more]
A0A0K9RY00_SPIOL4.0e-9100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo12325.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12325.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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