Spo26423.1 (mRNA)

Overview
NameSpo26423.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01155 : 156021 .. 157753 (-)
Sequence length1118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATATATATATATATATATATATATATATATATATATATATATATGAATGCCCTCCATCATCTTGTTAAACCGTCTCTTGTTTCTTCACTACTAGAAACATACACTTGCCAGCCTCAATAATTACACTAATTAAGCTACGACTATATATATGTATACATATATATATATATAATCACTACGCTTAATATCGAGTTTAGTATCACTAGTTCACCGTCGATCATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGTACGTATTATCATATCATACGGAGTATCTCGATCTCTCAACACAACGCCCGCACTTCATTTTAATTAATGATTATGGACATATATATTATTTATGGTTGCAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGGTATTTTATAACATACTCCATGCATCTGATTTCTATATCTATTATCCTATGCATGCAGCCATTCGTCAGCTGACAATATATTATTACAAAAACTTATATATGAAGGTTTTATATATAAGACAAGTTTCTTACAAGTAGTTATACGTGATCAAATAGTTATGTTCAATAATTAAAATCTATCAAACAGTTTCACTTTGTCACTGTATATATAGTTATATTTTTTTAATGATGGCATCAACGATCTTATGCATATGATTGTCTCACATGAGATTGGTTTGGTTTCCTAAGATCGATCTATAATTGCATCCTAGTTTAGCATGTTACATGGATGATGGATCAGTATTTTATGAAATTTACTAACATACCTGAGCTGATTTATTTTTTGAATGAACGTTTTAGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGTGAATTTCTTATAGAAGCTATTACAGATTCACAGTGTATAAGCTAATCTAAGAACAATAACTTAATTAATGTATTAACATTATTAATTATGTTGATCTTGTTGGATTGGTAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAAACCTTGTAATTTCCTATGATGAGTTTCTTAAATGAGAAAAGGTTGTACTTGTGCACAAGGCTCTGCTATTTAGTGCAAATTTTTTAAAAATATTTATGTTTATACATATGGATATTATTCCCCCTTTATACGAGTCTTTTTTTTTCAGATTGTAACAAAAGTAAAGTTATAATTAGGTGGATGTACTAGACCATGGTTTTTCTCTTTTTAAATTTAATAGAGCAATGTGTGTTTTGTAACATAAATATTGTGCTCGAAAAATTATACTACGTACTTGTATTAATGGAGTTATGAAGAGACAAAATTAGATAAAATGGAGGGCCATGTTTGACAAGTATGGCCCTAGCTTGGTTCCTCTTAATTTATTACAAGAGAGTGGGAAAGAGGCAGGGGTTACCTGTTAATAACTGCATTTTCAGTTAGCTCAACTACCATTCTACCAATCCTTTGTCAAAATAAAAAGAAAAAACTACCATTCTACCAGCCCGTA

mRNA sequence

ATATATATATATATATATATATATATATATATATATATATATATATATGAATGCCCTCCATCATCTTGTTAAACCGTCTCTTGTTTCTTCACTACTAGAAACATACACTTGCCAGCCTCAATAATTACACTAATTAAGCTACGACTATATATATGTATACATATATATATATATAATCACTACGCTTAATATCGAGTTTAGTATCACTAGTTCACCGTCGATCATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAAACCTTGTAATTTCCTATGATGAGTTTCTTAAATGAGAAAAGGTTGTACTTGTGCACAAGGCTCTGCTATTTAGTGCAAATTTTTTAAAAATATTTATGTTTATACATATGGATATTATTCCCCCTTTATACGAGTCTTTTTTTTTCAGATTGTAACAAAAGTAAAGTTATAATTAGGTGGATGTACTAGACCATGGTTTTTCTCTTTTTAAATTTAATAGAGCAATGTGTGTTTTGTAACATAAATATTGTGCTCGAAAAATTATACTACGTACTTGTATTAATGGAGTTATGAAGAGACAAAATTAGATAAAATGGAGGGCCATGTTTGACAAGTATGGCCCTAGCTTGGTTCCTCTTAATTTATTACAAGAGAGTGGGAAAGAGGCAGGGGTTACCTGTTAATAACTGCATTTTCAGTTAGCTCAACTACCATTCTACCAATCCTTTGTCAAAATAAAAAGAAAAAACTACCATTCTACCAGCCCGTA

Coding sequence (CDS)

ATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAA

Protein sequence

MSLVLLKIMAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVTVATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26423Spo26423gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26423.1Spo26423.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26423.1.utr5p.1Spo26423.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26423.1.CDS.4Spo26423.1.CDS.4CDS
Spo26423.1.CDS.3Spo26423.1.CDS.3CDS
Spo26423.1.CDS.2Spo26423.1.CDS.2CDS
Spo26423.1.CDS.1Spo26423.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26423.1.utr3p.1Spo26423.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26423.1.exon.4Spo26423.1.exon.4exon
Spo26423.1.exon.3Spo26423.1.exon.3exon
Spo26423.1.exon.2Spo26423.1.exon.2exon
Spo26423.1.exon.1Spo26423.1.exon.1exon


Homology
[Close]
BLAST of Spo26423.1 vs. NCBI nr
Match: gi|902231901|gb|KNA22437.1| (hypothetical protein SOVF_034060 [Spinacia oleracea])

HSP 1 Score: 247.7 bits (631), Expect = 1.200e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

		  

Query: 9   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 68
           MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT
Sbjct: 1   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 60

Query: 69  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 128
           VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS
Sbjct: 61  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 120

Query: 129 PIHNHH 135
           PIHNHH
Sbjct: 121 PIHNHH 126
[Close]
BLAST of Spo26423.1 vs. NCBI nr
Match: gi|731366525|ref|XP_010695119.1| (PREDICTED: uncharacterized protein LOC104907823 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 141.0 bits (354), Expect = 1.500e-30
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 1 

		  

Query: 6   LKIMAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSD 65
           + ++    LLLQ HACNARHTFDL SY+K  DADKTK +  E  IKG   +EDTK  S +
Sbjct: 4   IALIMVTFLLLQTHACNARHTFDLFSYSKLQDADKTKQLHHEY-IKGFPGVEDTKETSLE 63

Query: 66  DVTVATLENNTRP-AREVQGF-GEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVL 125
           D +  TL+ +TR    +VQG  G K RSM+ESKSH+ETKEAT+  EGEP+EDAVVMDYV 
Sbjct: 64  DTSFVTLDKSTRADITDVQGLKGNKPRSMLESKSHEETKEATDASEGEPIEDAVVMDYVQ 123

Query: 126 PHRKSPIHNHH 135
           PHRKSPIHN H
Sbjct: 124 PHRKSPIHNKH 133
[Close]
BLAST of Spo26423.1 vs. NCBI nr
Match: gi|870845021|gb|KMS97853.1| (hypothetical protein BVRB_5g122830 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 6.100e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 

		  

Query: 92  MIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH 135
           M+ESKSH+ETKEAT+  EGEP+EDAVVMDYV PHRKSPIHN H
Sbjct: 1   MLESKSHEETKEATDASEGEPIEDAVVMDYVQPHRKSPIHNKH 43
[Close]
BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUC3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034060 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.200e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

		  

Query: 9   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 68
           MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT
Sbjct: 1   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 60

Query: 69  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 128
           VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS
Sbjct: 61  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 120

Query: 129 PIHNHH 135
           PIHNHH
Sbjct: 121 PIHNHH 126
[Close]
BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCQ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g122830 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 

		  

Query: 92  MIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH 135
           M+ESKSH+ETKEAT+  EGEP+EDAVVMDYV PHRKSPIHN H
Sbjct: 1   MLESKSHEETKEATDASEGEPIEDAVVMDYVQPHRKSPIHNKH 43
The following BLAST results are available for this feature:
BLAST of Spo26423.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902231901|gb|KNA22437.1|1.2e-62100.hypothetical protein SOVF_0340... [more]
gi|731366525|ref|XP_010695119.1|1.5e-3061.0PREDICTED: uncharacterized pro... [more]
gi|870845021|gb|KMS97853.1|6.1e-1181.4hypothetical protein BVRB_5g12... [more]
back to top
BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RUC3_SPIOL8.2e-63100.Uncharacterized protein OS=Spi... [more]
A0A0J8BCQ0_BETVU4.3e-1181.4Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo26423.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo26423.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top