Spo19121 (gene) | SpinachBase

Overview


Name	Spo19121
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	GDP-mannose 4,6 dehydratase 2
Location	SpoScf_32381 : 2 .. 409 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCTCCGATCCCACTTCCGACCCAACCTCTGACCCCACCACAACTCCAGAAAACGGCACAACCCCAATCAAAGTTGCCTTAATCACCGGAATCACAGGCCAAGACGGGTCCTACCTCACCGAATTCCTCCTCTCAAAGGGCTATTCCGTCCATGGCTTAATCAGACGGTCCTCAAACTTCAACACACAAAGAATCAACCACATCTACATCGACCCACACAACGCCCATAAAGCCCGTATGAAGCTCCACTACGCCGATCTCACCGACGCCTCCTCTCTCCGCCGTTGGATCGACATTATCTCTCCTGATGAAGTCTACAACCTGGCCGCACAATCCCATGTCGCTGTTTCCTTTGAGATCCCTGATTACACGGCGGATGTTGTTGCCACGGGTTCACTGCGG

mRNA sequence

ATGGCATCCTCCGATCCCACTTCCGACCCAACCTCTGACCCCACCACAACTCCAGAAAACGGCACAACCCCAATCAAAGTTGCCTTAATCACCGGAATCACAGGCCAAGACGGGTCCTACCTCACCGAATTCCTCCTCTCAAAGGGCTATTCCGTCCATGGCTTAATCAGACGGTCCTCAAACTTCAACACACAAAGAATCAACCACATCTACATCGACCCACACAACGCCCATAAAGCCCGTATGAAGCTCCACTACGCCGATCTCACCGACGCCTCCTCTCTCCGCCGTTGGATCGACATTATCTCTCCTGATGAAGTCTACAACCTGGCCGCACAATCCCATGTCGCTGTTTCCTTTGAGATCCCTGATTACACGGCGGATGTTGTTGCCACGGGTTCACTGCGG

Coding sequence (CDS)

ATGGCATCCTCCGATCCCACTTCCGACCCAACCTCTGACCCCACCACAACTCCAGAAAACGGCACAACCCCAATCAAAGTTGCCTTAATCACCGGAATCACAGGCCAAGACGGGTCCTACCTCACCGAATTCCTCCTCTCAAAGGGCTATTCCGTCCATGGCTTAATCAGACGGTCCTCAAACTTCAACACACAAAGAATCAACCACATCTACATCGACCCACACAACGCCCATAAAGCCCGTATGAAGCTCCACTACGCCGATCTCACCGACGCCTCCTCTCTCCGCCGTTGGATCGACATTATCTCTCCTGATGAAGTCTACAACCTGGCCGCACAATCCCATGTCGCTGTTTCCTTTGAGATCCCTGATTACACGGCGGATGTTGTTGCCACGGGTTCACTGCGG

Protein sequence

MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19121.1	Spo19121.1	mRNA

Homology

[Close]

BLAST of Spo19121.1 vs. NCBI nr
Match: gi|902217290|gb|KNA17656.1| (hypothetical protein SOVF_077970 [Spinacia oleracea])

HSP 1 Score: 269.6 bits (688), Expect = 2.900e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60
           MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS
Sbjct: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60

Query: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120
           NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF
Sbjct: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120

Query: 121 EIPDYTADVVATGSLR 137
           EIPDYTADVVATGSLR
Sbjct: 121 EIPDYTADVVATGSLR 136

[Close]

BLAST of Spo19121.1 vs. NCBI nr
Match: gi|743839402|ref|XP_011025933.1| (PREDICTED: GDP-mannose 4,6 dehydratase 1 [Populus euphratica])

HSP 1 Score: 221.9 bits (564), Expect = 7.000e-55
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 1


		  
Query: 8   SDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRI 67
           SD     + TP NG    K+ALITGITGQDGSYLTEFLL+KGY VHGLIRRSSNFNTQRI
Sbjct: 5   SDQPGSDSNTPANGEITPKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRI 64

Query: 68  NHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTA 127
           NHIYIDPHNAHKARMKLHYADL+DASSLRRW+D ISPDEVYNLAAQSHVAVSFEIPDYTA
Sbjct: 65  NHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTISPDEVYNLAAQSHVAVSFEIPDYTA 124

Query: 128 DVVATGSLR 137
           DVVATGSLR
Sbjct: 125 DVVATGSLR 133

[Close]

BLAST of Spo19121.1 vs. NCBI nr
Match: gi|729300054|ref|XP_010557675.1| (PREDICTED: GDP-mannose 4,6 dehydratase 2 [Tarenaya hassleriana])

HSP 1 Score: 220.3 bits (560), Expect = 2.000e-54
Identity = 110/129 (85.27%), Postives = 115/129 (89.15%), Query Frame = 1


		  
Query: 12  SDPTTTPENGT----TPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRI 71
           SD  TTP   +    TP K+ALITGITGQDGSYLTEFLL KGY VHGLIRRSSNFNTQRI
Sbjct: 10  SDSATTPNGDSAAAETPRKIALITGITGQDGSYLTEFLLGKGYDVHGLIRRSSNFNTQRI 69

Query: 72  NHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTA 131
           NHIY+DPHN HKARMKLHYADLTDASSLRRWID+I PDEVYNLAAQSHVAVSFEIPDYTA
Sbjct: 70  NHIYVDPHNVHKARMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTA 129

Query: 132 DVVATGSLR 137
           DVVATG+LR
Sbjct: 130 DVVATGALR 138

[Close]

BLAST of Spo19121.1 vs. NCBI nr
Match: gi|224097148|ref|XP_002310852.1| (GDP-mannose 4 family protein [Populus trichocarpa])

HSP 1 Score: 218.0 bits (554), Expect = 1.000e-53
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1


		  
Query: 7   TSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQR 66
           ++ P SD +T P NG    K+ALITGITGQDGSYLTEFLL+KGY VHGLIRRSSNFNTQR
Sbjct: 5   SNQPGSD-STIPVNGEITPKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQR 64

Query: 67  INHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYT 126
           INHIYIDPHNAHKARMKLHYADL+DASSLRRW+D I+PDEVYNLAAQSHVAVSFEIPDYT
Sbjct: 65  INHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTINPDEVYNLAAQSHVAVSFEIPDYT 124

Query: 127 ADVVATGSLR 137
           ADVVATG+LR
Sbjct: 125 ADVVATGALR 133

[Close]

BLAST of Spo19121.1 vs. NCBI nr
Match: gi|595818568|ref|XP_007204374.1| (hypothetical protein PRUPE_ppa007357mg [Prunus persica])

HSP 1 Score: 216.9 bits (551), Expect = 2.300e-53
Identity = 112/136 (82.35%), Postives = 119/136 (87.50%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60
           MAS   T+   S P  +  +   P KVALITGITGQDGSYLTEFLL+KGY VHGLIRRSS
Sbjct: 1   MASETDTTRSGSTPNGSAPDPPEPRKVALITGITGQDGSYLTEFLLNKGYDVHGLIRRSS 60

Query: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120
           NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWID I+P+EVYNLAAQSHVAVSF
Sbjct: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDTIAPNEVYNLAAQSHVAVSF 120

Query: 121 EIPDYTADVVATGSLR 137
           EIPDYTADVVATG+LR
Sbjct: 121 EIPDYTADVVATGALR 136

[Close]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077970 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.000e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60
           MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS
Sbjct: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60

Query: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120
           NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF
Sbjct: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120

Query: 121 EIPDYTADVVATGSLR 137
           EIPDYTADVVATGSLR
Sbjct: 121 EIPDYTADVVATGSLR 136

[Close]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Match: A9PEZ8_POPTR (GDP-mannose 4 family protein OS=Populus trichocarpa GN=POPTR_0007s13960g PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.000e-54
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1


		  
Query: 7   TSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQR 66
           ++ P SD +T P NG    K+ALITGITGQDGSYLTEFLL+KGY VHGLIRRSSNFNTQR
Sbjct: 5   SNQPGSD-STIPVNGEITPKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQR 64

Query: 67  INHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYT 126
           INHIYIDPHNAHKARMKLHYADL+DASSLRRW+D I+PDEVYNLAAQSHVAVSFEIPDYT
Sbjct: 65  INHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTINPDEVYNLAAQSHVAVSFEIPDYT 124

Query: 127 ADVVATGSLR 137
           ADVVATG+LR
Sbjct: 125 ADVVATGALR 133

[Close]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Match: M5W8I7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007357mg PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.600e-53
Identity = 112/136 (82.35%), Postives = 119/136 (87.50%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTTPIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSS 60
           MAS   T+   S P  +  +   P KVALITGITGQDGSYLTEFLL+KGY VHGLIRRSS
Sbjct: 1   MASETDTTRSGSTPNGSAPDPPEPRKVALITGITGQDGSYLTEFLLNKGYDVHGLIRRSS 60

Query: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSF 120
           NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWID I+P+EVYNLAAQSHVAVSF
Sbjct: 61  NFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDTIAPNEVYNLAAQSHVAVSF 120

Query: 121 EIPDYTADVVATGSLR 137
           EIPDYTADVVATG+LR
Sbjct: 121 EIPDYTADVVATGALR 136

[Close]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QVZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G196100 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.500e-53
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1


		  
Query: 26  KVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLH 85
           K+ALITGITGQDGSYLTEFLL+KGY VHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLH
Sbjct: 28  KIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLH 87

Query: 86  YADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           YADLTDASSLRRW+D I PDEVYNLAAQSHVAVSFEIPDYTADVVATG+LR
Sbjct: 88  YADLTDASSLRRWLDTIRPDEVYNLAAQSHVAVSFEIPDYTADVVATGALR 138

[Close]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Match: A0A103XKB6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_005653 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.600e-53
Identity = 109/122 (89.34%), Postives = 110/122 (90.16%), Query Frame = 1


		  
Query: 16  TTPENGTTPI-KVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDP 75
           TT   G  P  KVALITGITGQDGSYLTE LL KGY VHGLIRRSSNFNTQRINHIYIDP
Sbjct: 12  TTANGGEAPKRKVALITGITGQDGSYLTELLLEKGYEVHGLIRRSSNFNTQRINHIYIDP 71

Query: 76  HNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGS 135
           HN HKARMKLHYADLTDASSLRRWID ISPDE+YNLAAQSHVAVSFEIPDYTADVVATGS
Sbjct: 72  HNTHKARMKLHYADLTDASSLRRWIDTISPDEIYNLAAQSHVAVSFEIPDYTADVVATGS 131

Query: 136 LR 137
           LR
Sbjct: 132 LR 133

[Close]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3)

HSP 1 Score: 212.2 bits (539), Expect = 3.500e-54
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTT---PIKVALITGITGQDGSYLTEFLLSKGYSVHGLIR 60
           MAS +  S   S+  T P+  +T   P K+ALITGITGQDGSYLTEFLL KGY VHGLIR
Sbjct: 1   MASENNGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60

Query: 61  RSSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVA 120
           RSSNFNTQRINHIYIDPHN +KA MKLHYADLTDASSLRRWID+I PDEVYNLAAQSHVA
Sbjct: 61  RSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVA 120

Query: 121 VSFEIPDYTADVVATGSLR 137
           VSFEIPDYTADVVATG+LR
Sbjct: 121 VSFEIPDYTADVVATGALR 139

[Close]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.500e-52
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1


		  
Query: 24  PIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMK 83
           P K+AL+TGITGQDGSYLTEFLL KGY VHGLIRRSSNFNTQR+NHIY+DPHN +KA MK
Sbjct: 15  PRKIALVTGITGQDGSYLTEFLLEKGYEVHGLIRRSSNFNTQRLNHIYVDPHNVNKALMK 74

Query: 84  LHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           LHY DL+DASSLRRW+D+I PDEVYNLAAQSHVAVSFEIPDYTADVVATG+LR
Sbjct: 75  LHYGDLSDASSLRRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALR 127

[Close]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Match: GM4D_VIBCH (GDP-mannose 4,6-dehydratase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=gmd PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.600e-37
Identity = 77/111 (69.37%), Postives = 88/111 (79.28%), Query Frame = 1


		  
Query: 26  KVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLH 85
           KVALITGITGQDGSYL EFLL KGY VHG+ RRSS FNTQR++H+Y DPH       KLH
Sbjct: 4   KVALITGITGQDGSYLAEFLLEKGYEVHGIKRRSSLFNTQRVDHLYKDPHE-EDVNFKLH 63

Query: 86  YADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           Y DLTD+S+L R +  + PDEVYNL AQSHVAVSF+ P+YTADV A G+LR
Sbjct: 64  YGDLTDSSNLTRILAEVQPDEVYNLGAQSHVAVSFQSPEYTADVDAIGTLR 113

[Close]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Match: GM4D_VIBCL (GDP-mannose 4,6-dehydratase OS=Vibrio cholerae GN=gmd PE=3 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.500e-36
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 1


		  
Query: 26  KVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLH 85
           K ALITG+TGQDGSYL EFLL+KGY VHG+ RR+S+FNTQR++HIY DPH    A   LH
Sbjct: 3   KKALITGVTGQDGSYLAEFLLAKGYEVHGIKRRASSFNTQRVDHIYQDPH-VDNASFILH 62

Query: 86  YADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           Y DLTD+S+L R +  + PDEVYNL AQSHVAVSFE P+YTADV A G+LR
Sbjct: 63  YGDLTDSSNLTRILQEVKPDEVYNLGAQSHVAVSFESPEYTADVDAMGTLR 112

[Close]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Match: GM4D_YERE8 (GDP-mannose 4,6-dehydratase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN=gmd PE=3 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 4.300e-36
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 1


		  
Query: 25  IKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKL 84
           +K ALITGITGQDGSYL EFLL KGY VHG+ RRSS+FNT RI+HIY DPH  +     L
Sbjct: 1   MKKALITGITGQDGSYLAEFLLEKGYQVHGIKRRSSSFNTSRIDHIYQDPHEVN-PHFFL 60

Query: 85  HYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           HY DLTD S+L R +  I PDE+YNL AQSHVAVSFE P+YTADV A G+LR
Sbjct: 61  HYGDLTDTSNLIRLVKEIQPDEIYNLGAQSHVAVSFESPEYTADVDAMGTLR 111

[Close]

BLAST of Spo19121.1 vs. TAIR (Arabidopsis)
Match: AT3G51160.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 212.2 bits (539), Expect = 2.000e-55
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 1


		  
Query: 1   MASSDPTSDPTSDPTTTPENGTT---PIKVALITGITGQDGSYLTEFLLSKGYSVHGLIR 60
           MAS +  S   S+  T P+  +T   P K+ALITGITGQDGSYLTEFLL KGY VHGLIR
Sbjct: 1   MASENNGSRSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60

Query: 61  RSSNFNTQRINHIYIDPHNAHKARMKLHYADLTDASSLRRWIDIISPDEVYNLAAQSHVA 120
           RSSNFNTQRINHIYIDPHN +KA MKLHYADLTDASSLRRWID+I PDEVYNLAAQSHVA
Sbjct: 61  RSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVA 120

Query: 121 VSFEIPDYTADVVATGSLR 137
           VSFEIPDYTADVVATG+LR
Sbjct: 121 VSFEIPDYTADVVATGALR 139

[Close]

BLAST of Spo19121.1 vs. TAIR (Arabidopsis)
Match: AT5G66280.1 (GDP-D-mannose 4,6-dehydratase 1)

HSP 1 Score: 206.8 bits (525), Expect = 8.200e-54
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 1


		  
Query: 24  PIKVALITGITGQDGSYLTEFLLSKGYSVHGLIRRSSNFNTQRINHIYIDPHNAHKARMK 83
           P K+AL+TGITGQDGSYLTEFLL KGY VHGLIRRSSNFNTQR+NHIY+DPHN +KA MK
Sbjct: 15  PRKIALVTGITGQDGSYLTEFLLEKGYEVHGLIRRSSNFNTQRLNHIYVDPHNVNKALMK 74

Query: 84  LHYADLTDASSLRRWIDIISPDEVYNLAAQSHVAVSFEIPDYTADVVATGSLR 137
           LHY DL+DASSLRRW+D+I PDEVYNLAAQSHVAVSFEIPDYTADVVATG+LR
Sbjct: 75  LHYGDLSDASSLRRWLDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALR 127

The following BLAST results are available for this feature:

BLAST of Spo19121.1 vs. NCBI nr
BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
BLAST of Spo19121.1 vs. TAIR (Arabidopsis)

BLAST of Spo19121.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902217290\|gb\|KNA17656.1\|	2.9e-69	100.	hypothetical protein SOVF_0779...	[more]
gi\|743839402\|ref\|XP_011025933.1\|	7.0e-55	86.0	PREDICTED: GDP-mannose 4,6 deh...	[more]
gi\|729300054\|ref\|XP_010557675.1\|	2.0e-54	85.2	PREDICTED: GDP-mannose 4,6 deh...	[more]
gi\|224097148\|ref\|XP_002310852.1\|	1.0e-53	84.6	GDP-mannose 4 family protein [...	[more]
gi\|595818568\|ref\|XP_007204374.1\|	2.3e-53	82.3	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo19121.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RDQ4_SPIOL	2.0e-69	100.	Uncharacterized protein OS=Spi...	[more]
A9PEZ8_POPTR	7.0e-54	84.6	GDP-mannose 4 family protein O...	[more]
M5W8I7_PRUPE	1.6e-53	82.3	Uncharacterized protein OS=Pru...	[more]
A0A0D2QVZ4_GOSRA	3.5e-53	93.6	Uncharacterized protein OS=Gos...	[more]
A0A103XKB6_CYNCS	4.6e-53	89.3	Uncharacterized protein OS=Cyn...	[more]

BLAST of Spo19121.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
GMD2_ARATH	3.5e-54	79.8	GDP-mannose 4,6 dehydratase 2 ...	[more]
GMD1_ARATH	1.5e-52	85.8	GDP-mannose 4,6 dehydratase 1 ...	[more]
GM4D_VIBCH	6.6e-37	69.3	GDP-mannose 4,6-dehydratase OS...	[more]
GM4D_VIBCL	1.5e-36	68.4	GDP-mannose 4,6-dehydratase OS...	[more]
GM4D_YERE8	4.3e-36	68.7	GDP-mannose 4,6-dehydratase OS...	[more]

BLAST of Spo19121.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G51160.1	2.0e-55	79.8	NAD(P)-binding Rossmann-fold s...	[more]
AT5G66280.1	8.2e-54	85.8	GDP-D-mannose 4,6-dehydratase ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 26..135 score: 1.5
IPR016040	NAD(P)-binding domain	PFAM	PF16363	GDP_Man_Dehyd	coord: 29..136 score: 2.5
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 26..134 score: 1.85
None	No IPR available	PANTHER	PTHR10366	NAD DEPENDENT EPIMERASE/DEHYDRATASE	coord: 27..136 score: 5.6
None	No IPR available	PANTHER	PTHR10366:SF346	GDP-MANNOSE 4,6 DEHYDRATASE 1-RELATED	coord: 27..136 score: 5.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0009298	GDP-mannose biosynthetic process
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0008446	GDP-mannose 4,6-dehydratase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16459	0.96	Barchart \| Table