Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAACTGGATGCAAAAATAATTCGATGAACTCGACCTCACCCGATCAGTTTGACAGTTCTATGCCAACGTCATCAACGATTTTCAAAATCCAGAACAACCCCTTTACAAATATCGAAGTGACCCACTGACGATTGACGAACTTCTACTTCAATTCAACAGTTAAAAGAAAACGGGAGCGACAAAAACTCAATCAGATTGTTTTTTGTTGAAGAAAAATGGTGAAAGGATTACAACAACAAAATCTCCCAGCCGATGTAACTCAACTCGTCGACCAATTAGAGAGACATTGCTTAGCTTCCGATGGCTCCTTTGTCTCTAAATCTGCTTATTACGACCTTCAACTCGTAATTTTTTCTCTAATTCTTTTTATCATCTTTCAGTTAATTTCTGTTCATTTCGCTAAATCTAATTGTTGTTGGAATTTTTATTGATATTTTTGCAGGCAAGGGAGGAGATGTGCAGGGAGAGATTGCGGTATTTGGAAGCGATGGTACCTTTGTTTGGGGGAAATTTTAGAAATTTCTAAAAAGTAGTGGGTTTTCAATGAATGTGGTTGAATTTGATGTTAATTTTTTGTAATTTTTGTAGGCAATTTATTGTGAAGCAATTGCAATGGTTGAAGAATATCAGCAGGCTCTATCTGTTGCTAATCGTGATGTTCAGGGTTTATACCCGCAGCTCGGTTCGAAGAATTCTCCTCAGGTTCGATTTTGGATTTTTCGGCATTAATCTGTGACATCTTATGTTATTGCATTTTCATAATTTCATGCCAATTTTATTTTCTGTAAGAAATTTTATGTTCCGAGGATGATAATGTGAGAAAGGTAAATATTGTTGTCCAGCGAGTGTGAGAGCCATGTGTGTCCTGTTCTTTCCGCAGTTAATCGAGAAATATGTGCAGCTTTTGTTCTATTGAGTATTTAGAAAATAGAATTGCGTATAGATTTTGAGATGTTTAGTTAATATCAGGTTTACGAGACACTAGAGCACCGCCTTGTTGTTGCTGAGGCGGCCCAAAAGTTGAGACTTCCACTTATCTCCAAAGATGGTGAGATTCATGAAGAGGATATTGAGAAGTGGAGTATCATGTCAAGAAGCTCTCTTGATAGTACCAGCACAAATTTGACAATGAGCTCAAGCACTAATTCAACAAATTATGGTACTAGTACCCCAAGTACAGTAGCAAATGTCACCCCTTCTAATTCGACTGATATGAGCGATCCTGGGATCGGTGGAGTTCCAAATCGTTATTTAGGAATCACTTCAACTTATTTATGGCAGACTCAGCTACATCAGGTTTCATTGTCTGGGGGATGTTGGACATTGATCACATTGTTGATTTTGCCCACTGTTAAATGCTCTTTTACTTATTCTTTATTGTGTTCTACTCTCGTTGCAATTGTAGGGTACGGCAGAATATCAGATGTCACTCTTCCGTGAGATTGAGGCTCGTTTGAGAGTAAAATGTGATCAATTGGCAGATGCTTTTGTAATGGACGATGTTGGTGAGTGTCTGACTCTTTCCTTGAGATTTTCTTTTTCACTTTGACCTATGTGATACACAAGGAAGCGGTGGAATATCAAGGAGGTCTATGCATGATTTTGTTTCACTAGAATACTTGATTTAAATGCATTGTCTGACTTCATGGAATTTACCTACATCTCCATGTTCGTAACCTAGCTATTATTTATCTACTGCATCATCATTTGGCATAGGTGCGTAAAATGACTCTTGTATTCAATTATGGGTGGTTCTTATCACCAGATTTTTATGTCTTTATTTGCTTTATTTTTTCCTCCATACATAGTATCTACTGCATCATCATTTGGCATAGGTGTGCTCTATTTTTTGCCTTCATTGAAATGGAACATGTGAAGGCAACCATGTACTTTACATGAAATATCTAGCACTTTGAAACATTTTAATTAATGGACTCCCACATTTTGTCCATTCAATAAAATGGTTTAGATTAGTGATAAGGTGACATTTTAGCTTGAATGTGACCAGCTCTATTTATTTACGTGAACTCGTATTTAACCTGTGTAATCAATTGATTTTGTGTTTGTTTAAATTGATAGCCAATATGGAAATCCATGTAGCCAATCAACATGTAAATAGAGCATTCTCATGAAAATTTGAGTTGTTTGGAAGTTCAAACTCGTTTGTGAAAATAGTTTTTTTGACTTTCCAAAATTACAGAACACCTTTATATATTTCCTGGGAAGTTATATATTCAGTAACATGAATTCTCATAGAATTTTGCTTTCTTTAGAATTCTTGCGGAAGCACAGCCGTATGGTGCTGTATGGTTAAATTTCCTTTTCTCGGTTTGTTTATCTTGACACAAATAATAAGACATGATTACCAGATTTATTGATACTCAATGATCATGCAATGTTAACATCACCAAGGTGGACTAATAACGTCCAGCGAGTTTATAAACTTAAACTGCAGCATAAAATCATAGACATCATTGTAAGCATGGACTTAAACAGTTTATGATGCTCCTTTTTTCTTTCATTTGTGCAGACGGTTCATCTGGATATCAGAATGTTAGTTCACGACTTCCAGAAAGGTCTGTGGGCTCTCTCTGTTTTAGCATTCCTCTCTAGTTTGGCATATTATAAACATTTGATAATGTAAGAGACCTAGGAATGGGAGAACTCTTCCCCTGCAGAGATTGTATATCATGCCCCAGGTCTAAAGAGATTAATGCGCACTATTTTTACTAGCCCCTTCTGCCCTCTTTGAATTTTCTCTCCTGTTTAGTGGGTATTTGACTGCCTACTCATTACACTCATCTGGTTTGTTATTATTACAAGAGACAGCAAGATGCTCTTTGTAACTGCACTCAGAGTCTTACACCACTTTCTGTTTATCAGGGTAAAGATAATTATTGAAGAGATTGAAAGGGACGAAGAAGCTTTGAAAGAGGATCTCTACTCTGCTGATAGAAAATTTGCAGAATACTATAATGTGTGTAAGCAATAAAATGAACATCATTGGTATTTATCGTATCCGTTTAAATCTGTGATATACCTTAATTTTATCTTTATCTTCCACGAAATTAAATTATATATCCAATTAATTACACTCTGCTCGTCAGGTTTTAGAGCAAATACTTGGTGTGCTTATTAAGCTTGTCAAAGATTTGAAGTTGCAAAATCAACATAAATATGTGAGTTTTCCATGTTGCTGAGGCTGATGGTTACTTTTAATATGCTGACCTCAAATTATACGAAGTATTTGGACAGTGAGGCAACTGATTATGTTCAAATTTCTGTAGGATGAACTGCAGAAAACTTGGCAAATCAAGAGACATGAGGCGATGGGTGCTAAGCTGAGGTAAGCCAACCATTGCTGGCTCTTGTTCCTGCATTAATTTTGTACAGTTGTAACAAACTCAAGTCATACAAATCTCACATAGAAGACCAAAAAGGCAAAACTTATCTCATAGTTTCATGAATTAGTTTTTCTATGACAGTTCCAAACTAACTTTATGGTATAAAATTTTAATTCAAACAAGCACCTTTGATAGTCGGGGAGCTCTTAATTCTTGGGAGTGGAATGGATGTAGTTGTCGAAGGGTTGTTTCTATATAATTACAATTTATGAACCAGCAGTATATGACAGATGCAACTGTTGCAGAATTGTGGGTTTCAATTATGTAATCAGTGATGTTTGATGATTGAATCATGTGTCAATCTTGTTTTAAAATGACAGTGTTGAACCCCGGCTCATGATTTTCAGGGTGTCTTTGGCTCTTTAATGTGCTTCAAAGTAGGGCTTCTAAGTTCTAACTTATAAAAGGGGTTTATTCATTTAGCAATCAGCACTAGTTTGTTGTCATCAAAGAAGCACGTCTTAGACTCTGTTAATTTTACTCGTAGTAGGAGAGTGTATGATGCTAATGATCTAAGATCTTGTGTGCATTATCATGCCAGGGTATTGGATCATATTCTCCTTGTTGCAACCTATACTCAAGAAACAATACCAGCTCTCCACAAGATCAGGTGATATATCAAGATACAAATATGCGATTGAGATTCTCTTTCTGGACTTAAATAGTTAATTTTGATCCTCTCTGCTCAGGAATTACCTTGTTGAAGCAACAGAGGAGGCTTCAACCGCATATAACAAAGCAGTATGTTTGCTGACACCATTCTCGTGATGTTCTGACGTTGATGTCATTTATACATTTTCTGTTTGTTCATTTATTTGATGTTGCTCATCAACTGTGACAAATTGATGACAATAAGATCTCTTAGATCGTTTGTCCTGAGAACTTGACATTTTACATCCTATCACTAACTTCGTTCAAAGTGTTTTTGGTTTCCCTTCTTACATCCGCCTATAATCATTTCTACTAACCCCCCCCCCCCCNCCCACCCTCCACCACCACCCACCCCACCCCAATTTACTTCCAATTTTTAGCCTGCAAACTGAGCTCTTTGTTGAAATTTCTTTTAGGTGACGCGGCTTCGTGAGTACCAAGGAGTTGATCCGCACTTTGACACAATAGCAAGGCAATACCATGACATTGTTAAAGTTAGTTTCCATTTTTCTGAAGTTTCTTGTGCAGTGTCTTTAAAATTCTGTGTTCTGAATGGAATTCCGTTGTGCAGAAACTAGAAAATATGCAATGGACAATTCACCAGGTTGAAATGGACTTGAAGTATTTACCAGATCACTCGAGCACATAGAAAGTTGTTTTGAATGTTTTTTATGTAAACATATGTATGTATAATTCTTTTGTAGTGAAGTTCTCTCTTGTACGGCGTAGTTTTTAAAACTCAAGGGTGGTAAGAAAACCAGAGGTGACACACATTGCATATTAGTATAAGTTAAGAAATCAAGTACGACCAGAAGTTATTCTTGTTATTTTTTATTTTTCTTTTGACATAGTTATCTCTCTTGTTGATGCACATACTTCATTACTTTGTATATACTAGTTGTTGGATCGTACGCTAGCGCGCACGATCCCCCAAGGTATAGAAAATTATTTTTGTAAAAATGTTACTCCCTCTGTCTCTTAATACTCGCACCGTTTTGACTTTTTGCACTATTCAAATAATTCACTTTGAC AATAAACTGGATGCAAAAATAATTCGATGAACTCGACCTCACCCGATCAGTTTGACAGTTCTATGCCAACGTCATCAACGATTTTCAAAATCCAGAACAACCCCTTTACAAATATCGAAGTGACCCACTGACGATTGACGAACTTCTACTTCAATTCAACAGTTAAAAGAAAACGGGAGCGACAAAAACTCAATCAGATTGTTTTTTGTTGAAGAAAAATGGTGAAAGGATTACAACAACAAAATCTCCCAGCCGATGTAACTCAACTCGTCGACCAATTAGAGAGACATTGCTTAGCTTCCGATGGCTCCTTTGTCTCTAAATCTGCTTATTACGACCTTCAACTCGCAAGGGAGGAGATGTGCAGGGAGAGATTGCGGTATTTGGAAGCGATGGCAATTTATTGTGAAGCAATTGCAATGGTTGAAGAATATCAGCAGGCTCTATCTGTTGCTAATCGTGATGTTCAGGGTTTATACCCGCAGCTCGGTTCGAAGAATTCTCCTCAGGTTTACGAGACACTAGAGCACCGCCTTGTTGTTGCTGAGGCGGCCCAAAAGTTGAGACTTCCACTTATCTCCAAAGATGGTGAGATTCATGAAGAGGATATTGAGAAGTGGAGTATCATGTCAAGAAGCTCTCTTGATAGTACCAGCACAAATTTGACAATGAGCTCAAGCACTAATTCAACAAATTATGGTACTAGTACCCCAAGTACAGTAGCAAATGTCACCCCTTCTAATTCGACTGATATGAGCGATCCTGGGATCGGTGGAGTTCCAAATCGTTATTTAGGAATCACTTCAACTTATTTATGGCAGACTCAGCTACATCAGGGTACGGCAGAATATCAGATGTCACTCTTCCGTGAGATTGAGGCTCGTTTGAGAGTAAAATGTGATCAATTGGCAGATGCTTTTGTAATGGACGATGTTGACGGTTCATCTGGATATCAGAATGTTAGTTCACGACTTCCAGAAAGGGTAAAGATAATTATTGAAGAGATTGAAAGGGACGAAGAAGCTTTGAAAGAGGATCTCTACTCTGCTGATAGAAAATTTGCAGAATACTATAATGTTTTAGAGCAAATACTTGGTGTGCTTATTAAGCTTGTCAAAGATTTGAAGTTGCAAAATCAACATAAATATGATGAACTGCAGAAAACTTGGCAAATCAAGAGACATGAGGCGATGGGTGCTAAGCTGAGGGTATTGGATCATATTCTCCTTGTTGCAACCTATACTCAAGAAACAATACCAGCTCTCCACAAGATCAGGAATTACCTTGTTGAAGCAACAGAGGAGGCTTCAACCGCATATAACAAAGCAGTGACGCGGCTTCGTGAGTACCAAGGAGTTGATCCGCACTTTGACACAATAGCAAGGCAATACCATGACATTGTTAAAAAACTAGAAAATATGCAATGGACAATTCACCAGGTTGAAATGGACTTGAAGTATTTACCAGATCACTCGAGCACATAGAAAGTTGTTTTGAATGTTTTTTATGTAAACATATGTATGTATAATTCTTTTGTAGTGAAGTTCTCTCTTGTACGGCGTAGTTTTTAAAACTCAAGGGTGGTAAGAAAACCAGAGGTGACACACATTGCATATTAGTATAAGTTAAGAAATCAAGTACGACCAGAAGTTATTCTTGTTATTTTTTATTTTTCTTTTGACATAGTTATCTCTCTTGTTGATGCACATACTTCATTACTTTGTATATACTAGTTGTTGGATCGTACGCTAGCGCGCACGATCCCCCAAGGTATAGAAAATTATTTTTGTAAAAATGTTACTCCCTCTGTCTCTTAATACTCGCACCGTTTTGACTTTTTGCACTATTCAAATAATTCACTTTGAC ATGGTGAAAGGATTACAACAACAAAATCTCCCAGCCGATGTAACTCAACTCGTCGACCAATTAGAGAGACATTGCTTAGCTTCCGATGGCTCCTTTGTCTCTAAATCTGCTTATTACGACCTTCAACTCGCAAGGGAGGAGATGTGCAGGGAGAGATTGCGGTATTTGGAAGCGATGGCAATTTATTGTGAAGCAATTGCAATGGTTGAAGAATATCAGCAGGCTCTATCTGTTGCTAATCGTGATGTTCAGGGTTTATACCCGCAGCTCGGTTCGAAGAATTCTCCTCAGGTTTACGAGACACTAGAGCACCGCCTTGTTGTTGCTGAGGCGGCCCAAAAGTTGAGACTTCCACTTATCTCCAAAGATGGTGAGATTCATGAAGAGGATATTGAGAAGTGGAGTATCATGTCAAGAAGCTCTCTTGATAGTACCAGCACAAATTTGACAATGAGCTCAAGCACTAATTCAACAAATTATGGTACTAGTACCCCAAGTACAGTAGCAAATGTCACCCCTTCTAATTCGACTGATATGAGCGATCCTGGGATCGGTGGAGTTCCAAATCGTTATTTAGGAATCACTTCAACTTATTTATGGCAGACTCAGCTACATCAGGGTACGGCAGAATATCAGATGTCACTCTTCCGTGAGATTGAGGCTCGTTTGAGAGTAAAATGTGATCAATTGGCAGATGCTTTTGTAATGGACGATGTTGACGGTTCATCTGGATATCAGAATGTTAGTTCACGACTTCCAGAAAGGGTAAAGATAATTATTGAAGAGATTGAAAGGGACGAAGAAGCTTTGAAAGAGGATCTCTACTCTGCTGATAGAAAATTTGCAGAATACTATAATGTTTTAGAGCAAATACTTGGTGTGCTTATTAAGCTTGTCAAAGATTTGAAGTTGCAAAATCAACATAAATATGATGAACTGCAGAAAACTTGGCAAATCAAGAGACATGAGGCGATGGGTGCTAAGCTGAGGGTATTGGATCATATTCTCCTTGTTGCAACCTATACTCAAGAAACAATACCAGCTCTCCACAAGATCAGGAATTACCTTGTTGAAGCAACAGAGGAGGCTTCAACCGCATATAACAAAGCAGTGACGCGGCTTCGTGAGTACCAAGGAGTTGATCCGCACTTTGACACAATAGCAAGGCAATACCATGACATTGTTAAAAAACTAGAAAATATGCAATGGACAATTCACCAGGTTGAAATGGACTTGAAGTATTTACCAGATCACTCGAGCACATAG MVKGLQQQNLPADVTQLVDQLERHCLASDGSFVSKSAYYDLQLAREEMCRERLRYLEAMAIYCEAIAMVEEYQQALSVANRDVQGLYPQLGSKNSPQVYETLEHRLVVAEAAQKLRLPLISKDGEIHEEDIEKWSIMSRSSLDSTSTNLTMSSSTNSTNYGTSTPSTVANVTPSNSTDMSDPGIGGVPNRYLGITSTYLWQTQLHQGTAEYQMSLFREIEARLRVKCDQLADAFVMDDVDGSSGYQNVSSRLPERVKIIIEEIERDEEALKEDLYSADRKFAEYYNVLEQILGVLIKLVKDLKLQNQHKYDELQKTWQIKRHEAMGAKLRVLDHILLVATYTQETIPALHKIRNYLVEATEEASTAYNKAVTRLREYQGVDPHFDTIARQYHDIVKKLENMQWTIHQVEMDLKYLPDHSST Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18883.1 vs. NCBI nr
Match: gi|902232490|gb|KNA22648.1| (hypothetical protein SOVF_032370 [Spinacia oleracea]) HSP 1 Score: 815.8 bits (2106), Expect = 3.400e-233 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 1
BLAST of Spo18883.1 vs. NCBI nr
Match: gi|731319246|ref|XP_010670158.1| (PREDICTED: uncharacterized protein LOC104887254 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 726.9 bits (1875), Expect = 2.100e-206 Identity = 381/430 (88.60%), Postives = 400/430 (93.02%), Query Frame = 1
BLAST of Spo18883.1 vs. NCBI nr
Match: gi|225460965|ref|XP_002280015.1| (PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera]) HSP 1 Score: 650.6 bits (1677), Expect = 1.900e-183 Identity = 348/437 (79.63%), Postives = 377/437 (86.27%), Query Frame = 1
BLAST of Spo18883.1 vs. NCBI nr
Match: gi|702378395|ref|XP_010063011.1| (PREDICTED: uncharacterized protein LOC104450241 [Eucalyptus grandis]) HSP 1 Score: 641.7 bits (1654), Expect = 8.800e-181 Identity = 348/434 (80.18%), Postives = 379/434 (87.33%), Query Frame = 1
BLAST of Spo18883.1 vs. NCBI nr
Match: gi|823222200|ref|XP_012443807.1| (PREDICTED: uncharacterized protein LOC105768437 isoform X1 [Gossypium raimondii]) HSP 1 Score: 641.0 bits (1652), Expect = 1.500e-180 Identity = 338/430 (78.60%), Postives = 377/430 (87.67%), Query Frame = 1
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RT73_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032370 PE=4 SV=1) HSP 1 Score: 815.8 bits (2106), Expect = 2.400e-233 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 1
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYN7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g039590 PE=4 SV=1) HSP 1 Score: 726.9 bits (1875), Expect = 1.400e-206 Identity = 381/430 (88.60%), Postives = 400/430 (93.02%), Query Frame = 1
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Match: D7T8C8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00440 PE=4 SV=1) HSP 1 Score: 650.6 bits (1677), Expect = 1.300e-183 Identity = 348/437 (79.63%), Postives = 377/437 (86.27%), Query Frame = 1
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Match: A0A059BW49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03470 PE=4 SV=1) HSP 1 Score: 641.7 bits (1654), Expect = 6.100e-181 Identity = 348/434 (80.18%), Postives = 379/434 (87.33%), Query Frame = 1
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SI66_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438400 PE=4 SV=1) HSP 1 Score: 641.0 bits (1652), Expect = 1.000e-180 Identity = 338/430 (78.60%), Postives = 377/430 (87.67%), Query Frame = 1
BLAST of Spo18883.1 vs. ExPASy Swiss-Prot
Match: AUG4_ARATH (AUGMIN subunit 4 OS=Arabidopsis thaliana GN=AUG4 PE=1 SV=1) HSP 1 Score: 587.4 bits (1513), Expect = 1.200e-166 Identity = 320/423 (75.65%), Postives = 354/423 (83.69%), Query Frame = 1
BLAST of Spo18883.1 vs. ExPASy Swiss-Prot
Match: HAUS4_HUMAN (HAUS augmin-like complex subunit 4 OS=Homo sapiens GN=HAUS4 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.700e-6 Identity = 46/197 (23.35%), Postives = 98/197 (49.75%), Query Frame = 1
BLAST of Spo18883.1 vs. ExPASy Swiss-Prot
Match: HAUS4_MOUSE (HAUS augmin-like complex subunit 4 OS=Mus musculus GN=Haus4 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 8.300e-6 Identity = 54/236 (22.88%), Postives = 106/236 (44.92%), Query Frame = 1
BLAST of Spo18883.1 vs. TAIR (Arabidopsis)
Match: AT1G50710.1 (unknown protein) HSP 1 Score: 587.4 bits (1513), Expect = 6.900e-168 Identity = 320/423 (75.65%), Postives = 354/423 (83.69%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18883.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18883.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18883.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo18883.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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