Spo25901 (gene)

Overview
NameSpo25901
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCarboxyl-terminal peptidase
Locationchr6 : 41189743 .. 41190972 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTATGGTTCCCTTTGTTTACCAGGTAAAATTTCATATTTCAATTCTTCATAACTTTGTGGTTCTAATCAGTTGGATTAACTAGAAAAATAGGCAATCTGCAAAACTAATACCCATAATATGTTGAAAAGGATCCTAAAACAGGGCATTGGTGGCTTCTACTACGCAACCCAGGTAAACCAGACGCCATTGTTGGTTATTGGCCACGAGAGATATTCACCGGTTTGGCAAATGGCGCGACTTATATTGCAGTTGGTGGAGAGGCATATAGCCCACCTGGTCAGCCTCTTCCTCCCATCGGAAACGGTTATTATCCGGTTGAAGATGCTACATTATCTGCATTTTGTGCTCGTCTTGTAGTTTTAGATTCAAACCATCAAAAGATTAGCCCTAAACAAACTGAAAAGTATACCGATAATTGGCATTATGGAGTCTATGATAGGGAACATTATGACAATTTAGGAAGAACAATCTTCTTCGGTGGTACTACAATGTAATTACATTTTCAGAATACAGGAAATAAAAACAACGATCAGTAATACTCGATAATTGACGTTTGCATTCTTGTTTTTCCGCCTTCTACCATATCATAAACACCACACGTATCTTGTTACTTCATACTGAAGTATGTTACAACATAGAGCTACAACCCAAGGAAAGGTGCATCCTAAATGTTTTACAAAGGATATAAAAAGCTACACCAATAGCATAACAAAGCCAAGGAAATCCTTGGCAAATAATGATAGTCAATGTTTGCCTGAAACCTGAAAAGCAAAGCATCGTAGGTTTTGCAGCCTTTGAGATCGAAGTCACGAAGTGTTGCACGTCTTTTCTGGCATCCATGGCTTGTGACGATACTTAACAATTTCGTATCCATCGTGAATTGAAATCACAAAATATTGACAGTTTTTTACCCCCAAGCTCGTATCAGAGTCAAAAAATGATTTTTATTAAAATATTTCATTTAAAATGATAAATTCATTTATGCATGTACCATATAAATATAGTTTTTTTACACTATTCCAATATGTCATTACTAAAACCGTCAAAAGAATCATGGCGGCACAGTGTACAACGACAATCATGGTTTAAAAACCATGAGCTAGTACAGTGAGAGTGAAAAACATGGCGGCAAGCAGAAAGGATGCACAACTTCTCCCAATCAACAAAAGGAAAATTGCATATCATACAATCTATATGACTAAAATCATTAGAATGTTCAGTTGA

mRNA sequence

ATGGTGTATGGTTCCCTTTGTTTACCAGGGCATTGGTGGCTTCTACTACGCAACCCAGGTAAACCAGACGCCATTGTTGGTTATTGGCCACGAGAGATATTCACCGGTTTGGCAAATGGCGCGACTTATATTGCAGTTGGTGGAGAGGCATATAGCCCACCTGGTCAGCCTCTTCCTCCCATCGGAAACGGTTATTATCCGGTTGAAGATGCTACATTATCTGCATTTTGTGCTCGTCTTGTAGTTTTAGATTCAAACCATCAAAAGATTAGCCCTAAACAAACTGAAAAGTATACCGATAATTGGCATTATGGAGTCTATGATAGGGAACATTATGACAATTTAGGAAGAACAATCTTCTTCGGTGTGAGAGTGAAAAACATGGCGGCAAGCAGAAAGGATGCACAACTTCTCCCAATCAACAAAAGGAAAATTGCATATCATACAATCTATATGACTAAAATCATTAGAATGTTCAGTTGA

Coding sequence (CDS)

ATGGTGTATGGTTCCCTTTGTTTACCAGGGCATTGGTGGCTTCTACTACGCAACCCAGGTAAACCAGACGCCATTGTTGGTTATTGGCCACGAGAGATATTCACCGGTTTGGCAAATGGCGCGACTTATATTGCAGTTGGTGGAGAGGCATATAGCCCACCTGGTCAGCCTCTTCCTCCCATCGGAAACGGTTATTATCCGGTTGAAGATGCTACATTATCTGCATTTTGTGCTCGTCTTGTAGTTTTAGATTCAAACCATCAAAAGATTAGCCCTAAACAAACTGAAAAGTATACCGATAATTGGCATTATGGAGTCTATGATAGGGAACATTATGACAATTTAGGAAGAACAATCTTCTTCGGTGTGAGAGTGAAAAACATGGCGGCAAGCAGAAAGGATGCACAACTTCTCCCAATCAACAAAAGGAAAATTGCATATCATACAATCTATATGACTAAAATCATTAGAATGTTCAGTTGA

Protein sequence

MVYGSLCLPGHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVEDATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFGVRVKNMAASRKDAQLLPINKRKIAYHTIYMTKIIRMFS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25901.1Spo25901.1mRNA


Homology
[Close]
BLAST of Spo25901.1 vs. NCBI nr
Match: gi|731374712|ref|XP_010667044.1| (PREDICTED: uncharacterized protein LOC104884146 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 186.4 bits (472), Expect = 3.800e-44
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           GHWWL +++P KPD I+GYWPREIF+ LA+ ATYIAVGGEAYSP GQ LPP+GNGYYP+E
Sbjct: 278 GHWWLAIKHPYKPDKIIGYWPREIFSELASSATYIAVGGEAYSPLGQRLPPMGNGYYPIE 337

Query: 70  DATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
           DA+ +A+C+   VLD+N+Q I+P QT +YTDNWHYGVYD  HY N GRTIFFG
Sbjct: 338 DASKTAYCSNYFVLDANYQMINPVQTTRYTDNWHYGVYDVAHYLNYGRTIFFG 390
[Close]
BLAST of Spo25901.1 vs. NCBI nr
Match: gi|870854500|gb|KMT06269.1| (hypothetical protein BVRB_7g161940 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.1 bits (362), Expect = 2.200e-31
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 

		  

Query: 11  HWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVED 70
           +WWL L        I+G+WP +IFT + + ATY+AVGGEAY PPGQPLPP+GNGYYP E+
Sbjct: 272 NWWLELCG-----TIIGFWPHQIFTAMQDAATYVAVGGEAYGPPGQPLPPMGNGYYPSEE 331

Query: 71  ATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
             L+A+C    +LD+N Q ++P+QTEKY   W YGVYD   Y + GRTI +G
Sbjct: 332 LLLTAYCRNFTILDANRQYVNPQQTEKYAPEWRYGVYDMGIYKDRGRTICYG 378
[Close]
BLAST of Spo25901.1 vs. NCBI nr
Match: gi|731345866|ref|XP_010684145.1| (PREDICTED: uncharacterized protein LOC104898741 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.1 bits (362), Expect = 2.200e-31
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 

		  

Query: 11  HWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVED 70
           +WWL L        I+G+WP +IFT + + ATY+AVGGEAY PPGQPLPP+GNGYYP E+
Sbjct: 278 NWWLELCG-----TIIGFWPHQIFTAMQDAATYVAVGGEAYGPPGQPLPPMGNGYYPSEE 337

Query: 71  ATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
             L+A+C    +LD+N Q ++P+QTEKY   W YGVYD   Y + GRTI +G
Sbjct: 338 LLLTAYCRNFTILDANRQYVNPQQTEKYAPEWRYGVYDMGIYKDRGRTICYG 384
[Close]
BLAST of Spo25901.1 vs. NCBI nr
Match: gi|731345868|ref|XP_010684146.1| (PREDICTED: uncharacterized protein LOC104898742 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.1 bits (357), Expect = 8.300e-31
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 1 

		  

Query: 11  HWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVED 70
           +WWL L         +G+WP ++FT + + ATY+AVGGEAY PP QPLPP+GNGYYP E+
Sbjct: 275 NWWLDLCG-----TTIGFWPHQLFTAMQDAATYVAVGGEAYGPPDQPLPPMGNGYYPSEE 334

Query: 71  ATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
             L+A+C    VLD+NHQ I+P+QTE++   WHYG+YD   + + GRTI FG
Sbjct: 335 LVLTAYCRNFTVLDANHQYINPQQTERFAPEWHYGIYDMGIFKDKGRTICFG 381
[Close]
BLAST of Spo25901.1 vs. NCBI nr
Match: gi|731345876|ref|XP_010684150.1| (PREDICTED: uncharacterized protein LOC104898746 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.9 bits (346), Expect = 1.600e-29
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1 

		  

Query: 11  HWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVED 70
           +WWL L        +VG+WP +IFT + + ATY+AVGGEAY PPGQPLPP+GNGYYP E+
Sbjct: 212 NWWLELCG-----IVVGFWPHQIFTAMQDAATYVAVGGEAYGPPGQPLPPMGNGYYPSEE 271

Query: 71  ATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
             L+A+C    +LD+N Q I+P+Q E++   W +GVY+   Y N GRTI +G
Sbjct: 272 LVLTAYCRNFTILDANRQYINPQQIERFAPEWRFGVYNMGIYKNRGRTICYG 318
[Close]
BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1T6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161940 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.500e-31
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 

		  

Query: 11  HWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVED 70
           +WWL L        I+G+WP +IFT + + ATY+AVGGEAY PPGQPLPP+GNGYYP E+
Sbjct: 272 NWWLELCG-----TIIGFWPHQIFTAMQDAATYVAVGGEAYGPPGQPLPPMGNGYYPSEE 331

Query: 71  ATLSAFCARLVVLDSNHQKISPKQTEKYTDNWHYGVYDREHYDNLGRTIFFG 123
             L+A+C    +LD+N Q ++P+QTEKY   W YGVYD   Y + GRTI +G
Sbjct: 332 LLLTAYCRNFTILDANRQYVNPQQTEKYAPEWRYGVYDMGIYKDRGRTICYG 378
[Close]
BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Match: A0A072TMV4_MEDTR (Carboxyl-terminal peptidase OS=Medicago truncatula GN=MTR_8g012985 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.100e-16
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           GHWWL + N  K    VGYWP+++FT L  GA+ I  GG+ YSPP + +PP+G+G +P E
Sbjct: 120 GHWWLYVENESK---FVGYWPKDLFTHLKEGASLIRFGGQTYSPPNKNIPPMGSGRFPKE 179

Query: 70  DATLSAFCARLVVLDS--NHQKISPKQTEKYTDNWHYGVYDREHY 113
             T S+F ARL ++DS  N   + P+  + Y D      YD E++
Sbjct: 180 KFTNSSFMARLKIIDSQRNEIDVKPEDMKPYRDT-STNCYDLEYH 220
[Close]
BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Match: A0A067JM94_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27098 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.900e-16
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           G W   +    +    VG+WP++IFTGLAN ATYI  GGE YSPP  P P +G+G  P E
Sbjct: 274 GDWIFQIEFGSEFSTQVGWWPQKIFTGLANSATYIEWGGEVYSPPNIPSPQMGSGNIPGE 333

Query: 70  --DATLSAFCARLVVLDSNHQKISPKQTEKYTDN--WHYGVYD 109
             ++  ++FCA +V++D +HQ ++  + E YTD    +Y  YD
Sbjct: 334 HMNSLYNSFCAEMVIVDEHHQTVNAPKVETYTDTPIIYYRAYD 376
[Close]
BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Match: G7KW24_MEDTR (DUF239 domain protein OS=Medicago truncatula GN=MTR_7g072230 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.000e-16
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           GHWWL ++   +    +GYWP+EIFT L  GA+ I  GG+ Y+PP +  PP+G+G +P E
Sbjct: 90  GHWWLYVQ---RESIRIGYWPKEIFTHLREGASKIRFGGQTYAPPNKDCPPMGSGRFPKE 149

Query: 70  DATLSAFCARLVVLDS--NHQKISPKQTEKYTDNWHYGVYDREHYDNLGR 118
               S F A+L ++DS  N   I P+  + Y D  +   YD E++ + GR
Sbjct: 150 KIINSGFMAKLTIIDSKYNEPAIKPEDMKPYKDT-NTNCYDLEYHGDEGR 195
[Close]
BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Match: M1DFI0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037801 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-14
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           G+WWLL+    +    VG+WP+ +FT L + AT +  GG  YSPPG P PP+G+ Y+P+E
Sbjct: 1   GNWWLLV---SQDFTRVGFWPQSLFTDLKSFATNVDWGGVVYSPPGVPEPPMGSSYFPIE 60

Query: 70  DATLSAFCARLVVLDSNHQKISPKQTEKYTDN 102
           D +  A+C  L++++   + I   +T  +TDN
Sbjct: 61  DTSYDAYCTDLIIVNEKGKIIQVDKTITHTDN 89
[Close]
BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Match: AT5G25410.1 (Protein of Unknown Function (DUF239))

HSP 1 Score: 75.9 bits (185), Expect = 2.600e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           G+WW+       P+  VGYWP+E+F  + NGA  + VGG   +    P PP+GNG +P+ 
Sbjct: 246 GNWWITKLIANAPNIDVGYWPKELFNLIGNGANMVGVGGAVQASHQGPSPPMGNGKFPIG 305

Query: 70  DATLSAFCARLVVLDSNHQ--KISPKQTEKYTDN 102
           D   SA    + VL+SN++  +I     EK  D+
Sbjct: 306 DPKESAMFTNIEVLNSNYEQRRIDSFPMEKLLDS 339
[Close]
BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Match: AT5G25415.1 (Protein of Unknown Function (DUF239))

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-13
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           G+WWL       P+  +GYWP+E+F  + NGAT + VGG   +      PP+GNG +PV 
Sbjct: 208 GNWWLTQILQNAPNEDIGYWPKELFNLINNGATTVGVGGAVQASGSGSSPPMGNGNFPVG 267

Query: 70  DATLSAFCARLVVLDSNH--QKISPKQTEKYTDN 102
               SA    + VLDSN+  +K++   TE   D+
Sbjct: 268 GRADSAIFTNIEVLDSNYNQRKMNSFPTEIMVDS 301
[Close]
BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Match: AT2G27320.1 (Protein of Unknown Function (DUF239))

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 1 

		  

Query: 23  DAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVEDATLSAFCARLVV 82
           D +VGYWP+E+FT L  GA+ +  GG  +  P    PP+GNGY+P  D   S+  +++ V
Sbjct: 238 DRVVGYWPKELFTHLNKGASLVRFGGNTFPSPDGFSPPMGNGYFPSHDFYKSSHFSKVKV 297

Query: 83  LDSNHQKI--SPKQTEKYTDNWHY 105
            +SN++ I    ++T +Y D++ +
Sbjct: 298 KNSNYETIDFEKQRTRRYADSYQF 321
[Close]
BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Match: AT2G35250.1 (Protein of Unknown Function (DUF239))

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-12
Identity = 29/83 (34.94%), Postives = 53/83 (63.86%), Query Frame = 1 

		  

Query: 23  DAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVEDATLSAFCARLVV 82
           D ++GYWP+E+F+ L NGA+ +  GG  +  P    PP+GNG++PV D   +A    +VV
Sbjct: 232 DEVIGYWPKELFSHLNNGASLVRYGGNTFESPDGISPPMGNGFFPVADFKKTAHFNNVVV 291

Query: 83  LDSNHQK--ISPKQTEKYTDNWH 104
           ++S++++  I  ++   Y D+++
Sbjct: 292 INSDYKRVYIEGRKIRLYVDSYN 314
[Close]
BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Match: AT5G11660.1 (Protein of Unknown Function (DUF239))

HSP 1 Score: 67.8 bits (164), Expect = 7.000e-12
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 1 

		  

Query: 10  GHWWLLLRNPGKPDAIVGYWPREIFTGLANGATYIAVGGEAYSPPGQPLPPIGNGYYPVE 69
           G+WW+      +PD  +GYWP+E+F  + N    + V G   + P    PP+GNG  P E
Sbjct: 185 GNWWVTDVRYDRPDVHIGYWPKELFDLIGNSVDMVGVAGAVQASPSGISPPMGNGQLPSE 244

Query: 70  DATLSAFCARLVVLDSNHQKISPKQTEK-YTDNWHYGVYD 109
           D   SA    + ++ S+ +     + EK   DN  YG+ D
Sbjct: 245 DENKSAHVKGVQIVHSDFKYSKKLKLEKLLDDNKCYGLKD 284
The following BLAST results are available for this feature:
BLAST of Spo25901.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731374712|ref|XP_010667044.1|3.8e-4469.9PREDICTED: uncharacterized pro... [more]
gi|870854500|gb|KMT06269.1|2.2e-3154.4hypothetical protein BVRB_7g16... [more]
gi|731345866|ref|XP_010684145.1|2.2e-3154.4PREDICTED: uncharacterized pro... [more]
gi|731345868|ref|XP_010684146.1|8.3e-3152.6PREDICTED: uncharacterized pro... [more]
gi|731345876|ref|XP_010684150.1|1.6e-2951.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo25901.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8C1T6_BETVU1.5e-3154.4Uncharacterized protein OS=Bet... [more]
A0A072TMV4_MEDTR1.1e-1642.8Carboxyl-terminal peptidase OS... [more]
A0A067JM94_JATCU6.9e-1642.7Uncharacterized protein OS=Jat... [more]
G7KW24_MEDTR9.0e-1640.0DUF239 domain protein OS=Medic... [more]
M1DFI0_SOLTU2.2e-1440.2Uncharacterized protein OS=Sol... [more]
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BLAST of Spo25901.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25901.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G25410.12.6e-1437.2Protein of Unknown Function (D... [more]
AT5G25415.11.3e-1338.3Protein of Unknown Function (D... [more]
AT2G27320.13.7e-1336.9Protein of Unknown Function (D... [more]
AT2G35250.11.1e-1234.9Protein of Unknown Function (D... [more]
AT5G11660.17.0e-1233.0Protein of Unknown Function (D... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004314Domain of unknown function DUF239PFAMPF03080DUF239coord: 10..122
score: 3.5
NoneNo IPR availablePANTHERPTHR31589FAMILY NOT NAMEDcoord: 10..122
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002084 protein depalmitoylation
biological_process GO:0010107 potassium ion import
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0048767 root hair elongation
biological_process GO:0009414 response to water deprivation
biological_process GO:0009651 response to salt stress
biological_process GO:0010167 response to nitrate
biological_process GO:0090333 regulation of stomatal closure
biological_process GO:0034765 regulation of ion transmembrane transport
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0015706 nitrate transport
biological_process GO:0010014 meristem initiation
biological_process GO:0006826 iron ion transport
biological_process GO:0071555 cell wall organization
biological_process GO:0010106 cellular response to iron ion starvation
biological_process GO:0007155 cell adhesion
biological_process GO:0045010 actin nucleation
biological_process GO:0032259 methylation
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0008474 palmitoyl-(protein) hydrolase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0030551 cyclic nucleotide binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005242 inward rectifier potassium channel activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo034380.67Barchart | Table
Spo226730.67Barchart | Table
Spo258760.67Barchart | Table