Spo20437 (gene)

Overview
NameSpo20437
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMediator of RNA polymerase II transcription subunit-like protein, putative
Locationchr6 : 29822565 .. 29831730 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACCATGATTCAGTAATAAAGACGTCGGTGAGGGGTGGTGTTATAAATAGCTTTTGGAATGTTTAAATAAAGAAAAAAGATATTGTCACTGTTTTAAAGTTAGATTCAAACAATTTCTTTAGATAATCCATTACCTTACATGAAAAGAACATGAATATACTCCTACTTATTATTTACTAGATTATATCCCGTGCACGCACGATTATTCTAAAATTATTGTTTAACCATATTTTTTATTAAATAATTATGCCCTGAAGCTCATGCGTAATTAACAAATCTTGAACATACTCATCTAATCATCTAATATAAAATTTTATTCCTATTACTCATTACACATATTTTATAAGTTTAATATGCTAATTTGATTAAAAGAATAAGAAACTATCTTTGCCATTAATGATATACCGATTTGACTAAAATATTTCAAAATTAATTTTAAACAAATTATTAAAATATTTTTGTTTAAAAGAAATGCAAGAAAATATATATTTTTGTTTAAACCGTTTGTAAGAAATGCAAGAAAATAAATAACATGTATTTAGGATACATAAACCGTTAATAAGAAATGCAAGAAAATAAATAAATAAGATACGTAGTATATTTTAGGAATATGTTTTTGGCGGGAAAAAATTACACCAGAAAATGACATGTGTAATTTTTGGTGTCTGTTTTAGTATAATAATATATTTTTTCATACATAAATCGTTTATAAGAAATGCAAGAAAATAAATAAATAAGATACATAGTACTACCTCCATTCTTAAATGATTTTTACGCTTATTATTTGCAAGGTAATTAAGGAATTTTGGTGAACATGTGATGGTGGGGTAACAAATGAAAAATGAGTGGCTATAAATTGTCCAACAATATGAGTGGATGAAAATTAATATTAAAGTATTGTGAGTGGGTAAGTTATGGTGGACCAAATGAGAGTAAAAGTAGAATAAAGTAGAGTGTAAAAAACTTCCAGGAACAGACTAAACAGAAAGCGTAAAAAACTTTCAGAAACGGAGATAATATATTTTAGGAATATGTTTTTGGCGGGAAAAAGTTACACCAGAAAATGACATGTGTCATTTCTGATGTCTGTTTTAATATATATAGTAATAGATATTTTTAATAAAGTGAAATAATAGTCATGTTCTTTTCCATATGTAAATATGTCTTTGGGTGCACCATGCTTATTGTACACCCTTGTCCATATTCGACGGTTTGAAATAATCTCTCTTTCTAATTTTGTACAAATATGCCTTTAATTATCTTATAAATAAACAAGTAAAAGTATGGGTTGAGATTTTGAAAATTTAAAACTAAACAATTACCAAATCTTACAAGATTGCACATATCTCACCATTATAAGCCTTGTACTTTTGAACGTGCTTGCAACTTTTAATTTGAGTTCAAGTCAGTTCACTTCAATCTATCTATTTTATTAACGCAGAATGATGGTTATTGAGAGGTGAGCAAATCCTCAATACTCCCTTTTCACATATGCCACGTCAATGGCCACGTCATACCCACTCAAGAGGCAACTAATCAATTCACAACTTTAATGCTTCAATCAAGCACTAATCAAGCAAGAAAAAAAAGGAGAATTCATATTAGCAATAAAAGGATAAATAACCATTTACAAAAAAGGAAATAGAAAATTTTGTATCAAATAAATAAGGGGGGAAAACAGTGTTGTATATCTTTAAAATGATATAATGACTAACTATTTCAAAACAAAACTTCAAAATTATGAAATTAATTGAAAATTAATTCTAATCATAACAAATTTAGAAAACGTCATTTTTTAATTCTGCATTTGATGTATATTTAATCAGTTTAATAAAAAAAAAAGTAGGTACTTCAATTAAATGGTTAAACAATACAATTTATAACTTACGCTATATTATTATAATTAATTTACATAGTCATCTACCAACATTTTAATTGTCTAACATCATTAAAGAAAAATCTCATGTAGACCGACATAGATATATCCTGATTTATTAATTTCATAACTACTCCCTATTTGTGTTATTACAATAATCCCTCCGTCACGGAATACTTGAACAGGTTTGTCCAGCACGGAGTTTAATACAAATTAATTGACTTATTATTTAATTAGATGGTAGTTGATAGTGAGGTATTTTTTTGATATAGATAGGGATATGTGTCAACTTTGGTGATAAGTGGTTGTTTGGTTATCAATTGTTTTTTTATTGAAAAAGTAGATGTGATAGGAGTTAGTAGGGTATTTGTTTAATTGAATGAGAGAGGGTGTGAGGACAAAATTAAATTTAGTGGGAAGAGAGAGACAATATAATAATTGTGGGGTCATTCCTAATTTAGAAGTGTAACAACTAATCTGGGACGGACGAAAAAGGAAATTGTAACAACTAATCTGGGACGGAGGGAGTAAGTTGGAAGTTGGTCTTGGACCAACCACCTCAAACGCTGCCGTTTAACTTTGGAGCAAACTAAAGAAAAGGAAAATAAAATCCTCTCTTCTACCGGTGGAACTTAGAAGGAAAGTAAAATCTTCAGTCTCCCCCTTCTCAAATTCTTCAATCTTTTGGAGCAAATTTTAAATTATCTCACCTCAATTATTCTCCAAACTGGGTTGCAGGTATTAATTTCAATCAAAATTTCTTCAAAATTCTCATTCAGTTCTATATTTTGTCGAAATTTGTGGGCATTTTGGATCGACCATTTTCTATTGAATTGATGTATTCTGTTCTTAATTACTGATACTGGCCTTAATTTGTTTTCTGATATTTCAATCACAACCGCTGAATAACTTGATAACCATGATTAATTAATAAATGTTTTATCAGACTATTGTACTTTCCTTTATAATGGAGTTGCTAGTTATACATCTGTATGCAGTGCCGTTTTTATTGATGATCTTGGCCTTAATTAGTTTATTTTGAGGTTTTATTATGATTAAATTTATGAACTAGTTTTTTACAATGATGGATTTTAATTATATTGTAACACAGAATAATTCTGCTTTCGGTGCCTTCTTGTCTCAGATTGTGTGTTTTCAGGTTAGGGATTATTCATTGTTGTTGTTAGTTGTGTTTGTGTGGCTGTTCTTTTCATCAGTTCGAACTATTGGTTGTGTTGAGAAATGAGAAAGGAGGTAGCCCGGAAAATATGATTGGGAAGAGCAAATCTACTGTATGTTTTATTCATGCGGCCCATTGCAGAAGCTCAAATAACAACAGTAGCTGTTTGCTGTTTGCGTACCAAGGAGTGTTAATTTAGTCATCTTTGCAGTGAATTAGATAAAAGGTTGCTATTATTACTGCCCTTGTTAGGAAACTATTCTTCCTCCAGAAGGTGAGAAAGAGGCTGGAAAGAGGGATGGAGAGGAGGATAGCAGAAAACTTATGATTCAGTTTCTTCTTGGTTCAGATTTTGAGTTTTATGGATTGATATTAGATGGAGCCATTGATAATTCATAATTGTGTATCATCAATGGTTGTTTATTATACTTGTTAGACATGTTTGTGTGGTTGTTGTTTATTTGTCAATTAAAATGTTTGTTGTGTTGAGAACTTATCAGAAACTACTAGATGGGAAGATCGATTTAATGTTTTTTGATGCCTGATCTTTCCTGCAGAAGCTCAACAATAACAATAGCTCTATGCTATTTGAGCTATCTTTTTTTCTATTATGTCTTCATATTCTATTCATAATATTGTGATCAACATGGTGCTAATTTAATTTTTGAAATGGGATTCAATACACGTGTTAAGATCAAAAGAGTTGTAAATTTGCTTTTAGGCTTTTATGGTTGGGATTAATTGTTCAATCTTAGTAAGGGTATTTTGAGGTGTGGTGCTAAATTATATCTTCTTTTAATTGGTGTAATTATTTTTACCCTCCCTCTACACTTAGAACCTCTGCATCACAGTTGTCATCTCATTCTCTTTCTTTATAAACCTAAGTTACAGGCAAAGATCATGGATCATCATCAATATGGAGGAGGAAGCTGGAGTATGATCCCCAATATTCCTACCCATACCAACTTATCTACACCCTCCACGCAAGATCCTCTCTTTCTATCTTCGCAGCCCCAGAACCAACAGCAATTTAATCTTCAGCAACAACAAACACAACAACAACAATTCGGCCTTCATCATCAACAACAACAGCAACAGTTTCAGTCACCACAACACCAACAATTCATTCAACAATCTCCCCAGCAACAGCAACAGTTTGTTCACCCTTCCCCGCAACAACAACTACAACAACAACAACAATTTGTCCATCCCTCGCCACAACAACAATCACAACAACAACAACAACCACAACAACAGCAACAGTATGTACATCCTTCACCGCAACAGCAGCAGCAACAATTTGTTCAACCTTCGCCGCAACAACAGCAGCAACAGTTTGTTCATCCCTCACCACAACAACAGCAACAATTTGTTCCTCCTTCGCCCCAACAGCAGCCACAGTTTGTTCCTCCTTCTCCCCAACAGCAGCAACAACAATTTGTGCAACAATCTCCTCAACAGCAACAGCAGCAGCCGTCGCAAATACAAACACAGAGGTTTCAACAGCAACAACAATACGTGCAGCAATCTCCTCAACAACAGCAACAACAATTTCAGCAACCATCACAATTTCAGCAGCAAACACAACAGCTGCAACAACCACAACAACAATTTGTGCATCAATCACCACAACAATCACAGCAACAGCAACTGCAGTCACCACCACAGCAATCGCAGTCGCAGTCGCAGTCACAGTCACAGCCGCAGCAACATCAGTCGCTTGCTTCTCACTTCCACCTCTTAAACGTGAGTTTTTCTTTCTTAAAAGAAAAACCTAACCCTCACATAATTTCTTTCAGATTTGTGATCCTGTTAAATTGATAATGCAGTTGGTGGAAAATCTAGCTGATGCAATTGAGAACGGGAATCGGGATCAGCATGCTAATACTTCGGTTTATCTCTCTCTCTCTGCCCCGATTTCCCATCTGAGTTTCTTATTTCATTTTTGTTTGTAGTTCATTATATTTTCATTGTTATTTGGCATTAGGGATTTCTGATGCTTTTTATCTGAGTTTGATTTGGCTAACTGGTGTGTTTTCTGTGTGTGTGTGGGTGTGTGTGTGTTTCTTCTGGGTGTAGATTGGTGAGCTGAACAGCCGCTTTGAGAAGTGCCAACAACTTTTGAACTCTATTGCGGGGACAATTAATTCAAAAGCCATGGTAAACTTTTTATCGAGAGAAATTATTTTGCTTTCCTGCTTTTTAAAGTTGTTTATAATTGATTCGCATGATTTTGTATAAGGTCTCATTATTTCCTATTGATTGAAAATTCTTGGATTTGCCTTGGTCATTTAATTATGACCTGCAGACTGTAGAAGGGCAAAAGCGCAAGCTTGAAGAAAGCGAGCGATTGCTTCTTCAAAGGAGGTATGATGATGCTCATAATTATGTTCATTTAAGTTTCAGTTTTGTGCTGCACTTTAAAACACTTCTTTGTTCAATGCCAGGGATTTAATTATCCTGCATTTAAATTTCAGTTTTGTGCTGCATGTAACATACATCTTTGTTTAATGCCAGGGATTTGATTTCCAATTATAAAAGTTCTGTTGAAGAGCTGATTAAGTCAGAACCTTGATACATATCCAAACTCCAATTTTGGTAAGCACTTTAGGTTTGCATATTGTACTTGAATTTAACTGTACCAAATCAAGTGAAGAATTGATCAGTGCATGAAATGTTGTATGAGTGTGTTGCTGTGGTATTTAGCACCTTGAGTCTTTAGATATAATTTGCTGTTGGTAACTTTAGAGAGAGTGTCCGTGGAATATTCTTGCCGCACCTCATTAATCCCGTAGGTTATAGGGGAATTTCCTTTTTGTTGTTTTTAGTTGAGTTTTGGCGTTTAAGAATAATGTGGGGACAACGACTTTTACAAAACATTGTTGTTATTGTCAAGTTTATATTTTGGTAAAGTATTGGTACAGACATGTTTCTTTTGGCTAATTCATTTACATTAATACTGACAGTCTGACCAATTAATACCAACATCAATTAACGATTATTTATCTAGTTGCACGAAACTGACCTCATATACCTCCTAAGTGAGGTTATGTGCTTAGATAAACTGTAACAATAGTTTACTCAAAGGTTGAACATTTAGCTATCAACCTTTGCAATGGTTCAGTTCTTTTTTCCACTCATTCTGATTACCAAATACGGAGTACTAAATAATTCACTTTTGGGTATGAGATTTGGATTGAATTTAACATTCACTTTTCTAAATTATTTTCCCTCCACTGTTACCTCTACAACTCCAGATTTGCTCTCATTTTAATAATGGCATATACGGAGTATATGAGCATCTCCGTTTTTGTTTGAGGAAATGTGGCTGGGTAATGTGCTTTGGTATGGAAGCAGCTGCTATAAGATGGGCTTTTTTTTGTATATGAGCTGGGTTAACAACCATCACATGGGACATGGCTTTATGGATTAGGGGTTTTATAAACCATACCATATAATTAGATTTTCAAGCCAAAGAGTATAGGGTTTAGTGGTTTACCTTTGAGCAACCATGGGTTCATCAAAATATTAGGATGTGTCAATAGGCAGTGACTCAGGATACATTGGAAGGACTTCCTGGATTTTGTTCAAAATTTGTCATAGTCTTGTCTTAAAACAGCCTATGTAACCTAGATCCATGGGGCCAGTAGCACTCTTGGGCGAACAACAGACCTTTCCTCTCTTCCTGTCAAGTCTTGATGCTGGAACTAGGACCCTCATAGATCTGAGTATCTTGTCAGATAGGCTTGGCTCCAGTTGCTTTTGTTAGGACTAAGCAAAGAGAACAAAGGGCCAGTGGGATGATATGCACCAGCTGATTGCCACGAGCTTGGTTTTGATATTGGTCACACGTTTTAGGACGAGAATCATATAGCTATTGGAACAGTTTTGCTGACCATTTCCTGACCTCATTGTAACCTTGGGTGCACAAGACTATCTGAAAGTGAACCTAAGAGGTTTCCCCACATTTTATTTCAAGATTATTCACTAAATATTACTTCCTCTATTTCTAAATACTCCGTAGATGCAGTAGCTTGACTGCCACACTTTCCAACGTCTAACTTTGAACATCAATAGCTTTAATTTATACGAAGTATTAGAAAGAATTACCAAAGGTCGATATTATGTATTGAGACCAATCTAACAACATTTTACGTAATGACATTTGTTTTTTATATGTTTTAGTTAAATTTTTAATCTCCGTGTTTGTTTGAGGAAATGTGACCGAGTAATGTGCTTTGGTATGGAAGCAGCTGCTATGAGATGGACTTTTTTGGATATGAGCTGGCTAACAACCAATCGCATGGGAAATGGCTTTATGGATTAGGGTTTTATAAACCATACCATATAATTAGATCTTCAAGCCAAAAATTATAGAGTTTACCTTTGAGAAACCTGCAATATACTCCAGCTTAATGCAGATTAAATTGGAAAGGCAGTAACTTTAAGGGAAAATTGTTGGATTCGATTGATTGATTGAACAGGAAAGATTACAAAAGGGATGACTTCAGGCCACTAGTCTCCGAGGCAGCAACTTTAGGTCGCAATTCTCTAAAAGGATCTGATTCACAATACATGACCTGCCCTGTTATTCCTCTCTATTCCTTTTTATACCAGCTAATGATTGTACGTCTGATTTGGAGGCTGATTTGGCTGCTTGTCCGTTTCCCCATTTTGAGTGTCTTTGTTTGTCTTCTTCTGGAGTAGGTGGAGTAGGTAAATTGCAGCTGGCTTGGGCCTAATTGAATTCGTTACACATCCATGGGTTCATCAAAACATTAGGATGTGTCAATAGGCAGTGGGAAGCTCAGGAGACATTGGAAGGACTCTTGGAAACTTAGGACAAGATCTATCTCAGTTAGATTTTCAAGAAAACGTCATTGAATCAGGTTAATGTCCTGATTTACAGCCCAGTTTACTCCCTTTAGCTAAAGTGGTTCATATTGTAAGCTTTATTTTCATCGTCGAGTGAGCCTCCTGTATGTTCTTTTTTCTGCCGTATTTTGCATCAGTATCTCTCTCTCTGTCCACTTTTGCTTCTGAGCTGGACAAATATCGCTCCATCTTTCCCGGCTGAAAATAGCTCATTACCCTAGTGTTTCCAACTAACTAACTACTTTTCAGTTTTCACCTTACATGATCATGAAATTGTATTAAGAATTTGTTCAGGAAACTCTTGGACAACAGAAATGTGGAGTCGGGTCTTTACGAGTGCTTTTGTTGATGATATAATGCATATATTTACATGCTTTCAGTAGACAGTTCTGTTGAGATTGATTTGTCAGAGAAGTTAGCTGGGATAGATATTTATGCCTCTTGCTTACCCCAAAATTTTGTTTGCTTTTTCCCAGGCTTTGGATTTTGTGTATGCTCTGGTTTGCAATAACTCCAGGCTTGTCCTCAGATAATATATTTTCAAGTCCGGCAATCTCTAAATGTTGCTAGCAGAGGTTGGAACGTTGGTGATGATGGTGTTTGTGAAGCTACAGCCTTGGAATCTATACCTCATTAAACAAATAATGCCCCGTTTGATCTGATGAAATGTTGTATCTGTAGAAGTCATAATAATCAGACTGAACGGGGCACCATGTTCATTTTTAGCTGTACGGAGTAATAAAGATCATTATTTTAATCAGAGTCAGCGTGTTCATTTTTAGCTGTACGAGAGTAATAAAAAAAAAATCTTCGTTTAGCTGCGCTGCTGCGTGTTTAGAAGAGTGTTGTTTTCTTTCAAGTTACAATAATTTTGACTGTATACTTTCAATTAGGTCTCAGGCTCTCAGCCTCTTATCTGTAATATCATTGTCACAGTATGTACCGAAAAAGTGACAAGGGAATTTCTGGTTCTGGTGATAGTTTTATATTTCAGTGACTAAATACAGAAAAGCCTTGTTTGCCTTGTTAAAATTTCAAGCGTTTCCTGAAATAGTCATGAAGCACATACTAATGTAATTTCAAGGCTTACCAGTAACCGGAAGTCCATATTGTTAAGAGTATTGCTCTATGGAGCATCATTGTTCAAGTGAAGAAAAAAAGACTCATCGTTATGTTTCCGCGTTTCAGTACACTTGAAAGGGTCAATATTTGGTTTCAACACAAAGACGC

mRNA sequence

ATGTTGACCATGATTCATCTCCCCCTTCTCAAATTCTTCAATCTTTTGGAGCAAATTTTAAATTATCTCACCTCAATTATTCTCCAAACTGGGTTGCAGTTACAGGCAAAGATCATGGATCATCATCAATATGGAGGAGGAAGCTGGAGTATGATCCCCAATATTCCTACCCATACCAACTTATCTACACCCTCCACGCAAGATCCTCTCTTTCTATCTTCGCAGCCCCAGAACCAACAGCAATTTAATCTTCAGCAACAACAAACACAACAACAACAATTCGGCCTTCATCATCAACAACAACAGCAACAGTTTCAGTCACCACAACACCAACAATTCATTCAACAATCTCCCCAGCAACAGCAACAGTTTGTTCACCCTTCCCCGCAACAACAACTACAACAACAACAACAATTTGTCCATCCCTCGCCACAACAACAATCACAACAACAACAACAACCACAACAACAGCAACAGTATGTACATCCTTCACCGCAACAGCAGCAGCAACAATTTGTTCAACCTTCGCCGCAACAACAGCAGCAACAGTTTGTTCATCCCTCACCACAACAACAGCAACAATTTGTTCCTCCTTCGCCCCAACAGCAGCCACAGTTTGTTCCTCCTTCTCCCCAACAGCAGCAACAACAATTTGTGCAACAATCTCCTCAACAGCAACAGCAGCAGCCGTCGCAAATACAAACACAGAGGTTTCAACAGCAACAACAATACGTGCAGCAATCTCCTCAACAACAGCAACAACAATTTCAGCAACCATCACAATTTCAGCAGCAAACACAACAGCTGCAACAACCACAACAACAATTTGTGCATCAATCACCACAACAATCACAGCAACAGCAACTGCAGTCACCACCACAGCAATCGCAGTCGCAGTCGCAGTCACAGTCACAGCCGCAGCAACATCAGTCGCTTGCTTCTCACTTCCACCTCTTAAACTTGGTGGAAAATCTAGCTGATGCAATTGAGAACGGGAATCGGGATCAGCATGCTAATACTTCGATTGGTGAGCTGAACAGCCGCTTTGAGAAGTGCCAACAACTTTTGAACTCTATTGCGGGGACAATTAATTCAAAAGCCATGACTGTAGAAGGGCAAAAGCGCAAGCTTGAAGAAAGCGAGCGATTGCTTCTTCAAAGGAGGGATTTGATTTCCAATTATAAAAGTTCTGTTGAAGAGCTGATTAAGTCAGAACCTTGATACATATCCAAACTCCAATTTTGGCTTTGGATTTTGTGTATGCTCTGGTTTGCAATAACTCCAGGCTTGTCCTCAGATAATATATTTTCAAGTCCGGCAATCTCTAAATGTTGCTAGCAGAGGTTGGAACGTTGGTGATGATGGTGTTTGTGAAGCTACAGCCTTGGAATCTATACCTCATTAAACAAATAATGCCCCGTTTGATCTGATGAAATGTTGTATCTGTAGAAGTCATAATAATCAGACTGAACGGGGCACCATGTTCATTTTTAGCTGTACGGAGTAATAAAGATCATTATTTTAATCAGAGTCAGCGTGTTCATTTTTAGCTGTACGAGAGTAATAAAAAAAAAATCTTCGTTTAGCTGCGCTGCTGCGTGTTTAGAAGAGTGTTGTTTTCTTTCAAGTTACAATAATTTTGACTGTATACTTTCAATTAGGTCTCAGGCTCTCAGCCTCTTATCTGTAATATCATTGTCACAGTATGTACCGAAAAAGTGACAAGGGAATTTCTGGTTCTGGTGATAGTTTTATATTTCAGTGACTAAATACAGAAAAGCCTTGTTTGCCTTGTTAAAATTTCAAGCGTTTCCTGAAATAGTCATGAAGCACATACTAATGTAATTTCAAGGCTTACCAGTAACCGGAAGTCCATATTGTTAAGAGTATTGCTCTATGGAGCATCATTGTTCAAGTGAAGAAAAAAAGACTCATCGTTATGTTTCCGCGTTTCAGTACACTTGAAAGGGTCAATATTTGGTTTCAACACAAAGACGC

Coding sequence (CDS)

ATGTTGACCATGATTCATCTCCCCCTTCTCAAATTCTTCAATCTTTTGGAGCAAATTTTAAATTATCTCACCTCAATTATTCTCCAAACTGGGTTGCAGTTACAGGCAAAGATCATGGATCATCATCAATATGGAGGAGGAAGCTGGAGTATGATCCCCAATATTCCTACCCATACCAACTTATCTACACCCTCCACGCAAGATCCTCTCTTTCTATCTTCGCAGCCCCAGAACCAACAGCAATTTAATCTTCAGCAACAACAAACACAACAACAACAATTCGGCCTTCATCATCAACAACAACAGCAACAGTTTCAGTCACCACAACACCAACAATTCATTCAACAATCTCCCCAGCAACAGCAACAGTTTGTTCACCCTTCCCCGCAACAACAACTACAACAACAACAACAATTTGTCCATCCCTCGCCACAACAACAATCACAACAACAACAACAACCACAACAACAGCAACAGTATGTACATCCTTCACCGCAACAGCAGCAGCAACAATTTGTTCAACCTTCGCCGCAACAACAGCAGCAACAGTTTGTTCATCCCTCACCACAACAACAGCAACAATTTGTTCCTCCTTCGCCCCAACAGCAGCCACAGTTTGTTCCTCCTTCTCCCCAACAGCAGCAACAACAATTTGTGCAACAATCTCCTCAACAGCAACAGCAGCAGCCGTCGCAAATACAAACACAGAGGTTTCAACAGCAACAACAATACGTGCAGCAATCTCCTCAACAACAGCAACAACAATTTCAGCAACCATCACAATTTCAGCAGCAAACACAACAGCTGCAACAACCACAACAACAATTTGTGCATCAATCACCACAACAATCACAGCAACAGCAACTGCAGTCACCACCACAGCAATCGCAGTCGCAGTCGCAGTCACAGTCACAGCCGCAGCAACATCAGTCGCTTGCTTCTCACTTCCACCTCTTAAACTTGGTGGAAAATCTAGCTGATGCAATTGAGAACGGGAATCGGGATCAGCATGCTAATACTTCGATTGGTGAGCTGAACAGCCGCTTTGAGAAGTGCCAACAACTTTTGAACTCTATTGCGGGGACAATTAATTCAAAAGCCATGACTGTAGAAGGGCAAAAGCGCAAGCTTGAAGAAAGCGAGCGATTGCTTCTTCAAAGGAGGGATTTGATTTCCAATTATAAAAGTTCTGTTGAAGAGCTGATTAAGTCAGAACCTTGA

Protein sequence

MLTMIHLPLLKFFNLLEQILNYLTSIILQTGLQLQAKIMDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHHQQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQFVQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSEP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20437.1Spo20437.1mRNA


Homology
[Close]
BLAST of Spo20437.1 vs. NCBI nr
Match: gi|902147678|gb|KNA05173.1| (hypothetical protein SOVF_192790 [Spinacia oleracea])

HSP 1 Score: 594.0 bits (1530), Expect = 2.000e-166
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1 

		  

Query: 39  MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH 98
           MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH
Sbjct: 1   MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH 60

Query: 99  QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ 158
           QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ
Sbjct: 61  QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ 120

Query: 159 QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF 218
           QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF
Sbjct: 121 QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF 180

Query: 219 VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH 278
           VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH
Sbjct: 181 VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH 240

Query: 279 QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA 338
           QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA
Sbjct: 241 QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA 300

Query: 339 NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV 398
           NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV
Sbjct: 301 NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV 360

Query: 399 EELIKSEP 407
           EELIKSEP
Sbjct: 361 EELIKSEP 368
[Close]
BLAST of Spo20437.1 vs. NCBI nr
Match: gi|731348251|ref|XP_010685401.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 372.5 bits (955), Expect = 9.600e-100
Identity = 278/376 (73.94%), Postives = 292/376 (77.66%), Query Frame = 1 

		  

Query: 41  HHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHHQQ 100
           HHQYGGGSWSMIPNIPTH+NLST STQDPLFLSSQPQ QQQF++QQQ    QQFGLH+ Q
Sbjct: 4   HHQYGGGSWSMIPNIPTHSNLSTSSTQDPLFLSSQPQQQQQFHIQQQS---QQFGLHNHQ 63

Query: 101 QQQQFQSPQHQQFIQQSPQQQQQ-FVHPSPQQQLQQQ---QQFVHPSPQQQSQQQQQPQQ 160
           QQQ FQSPQHQQ+IQQSPQQQQQ FV PSPQQQ QQQ   Q FVHPSPQQQ       QQ
Sbjct: 64  QQQ-FQSPQHQQYIQQSPQQQQQQFVQPSPQQQQQQQHLQQPFVHPSPQQQ-------QQ 123

Query: 161 QQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQ----PQFVPPSPQ 220
           QQQ+VHPSPQQQQQQFV PSPQQQQQQFVH SPQQ QQFV  SPQQQ    PQ   P  Q
Sbjct: 124 QQQFVHPSPQQQQQQFVHPSPQQQQQQFVHASPQQHQQFVQQSPQQQQQQQPQQFQPQTQ 183

Query: 221 QQQQQFVQQSPQQQQQ--QPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQ 280
           + QQQFVQQSPQQQQQ  QPSQ+Q Q  QQQQQ  QQ  QQ  QQ             +Q
Sbjct: 184 RFQQQFVQQSPQQQQQFQQPSQVQQQSSQQQQQQPQQLVQQSPQQL------------VQ 243

Query: 281 QPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIE 340
           Q  QQ V QSPQQSQQQQLQSP QQ           QQHQSLASHFHL+NLVENLADAIE
Sbjct: 244 QSPQQLVQQSPQQSQQQQLQSPTQQ-----------QQHQSLASHFHLVNLVENLADAIE 303

Query: 341 NGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDL 400
           NG RDQHA   IGEL+SRFEKCQQLLNSIAG INSKAMTVEGQK KLEESERLL +RRDL
Sbjct: 304 NGTRDQHAEALIGELHSRFEKCQQLLNSIAGKINSKAMTVEGQKHKLEESERLLNERRDL 345

Query: 401 ISNYKSSVEELIKSEP 407
           ISNYK+SVEELI+SEP
Sbjct: 364 ISNYKNSVEELIQSEP 345
[Close]
BLAST of Spo20437.1 vs. NCBI nr
Match: gi|659093591|ref|XP_008447610.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 1.200e-33
Identity = 148/242 (61.16%), Postives = 165/242 (68.18%), Query Frame = 1 

		  

Query: 167 QQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPP-SPQQQPQFVPPSPQQQQQQFVQQSPQ- 226
           QQQQ  +Q   QQQQQQ  H    QQQQF P   PQQQ Q    SPQ Q QQ    SPQ 
Sbjct: 32  QQQQFSLQHQQQQQQQQAFH---HQQQQFQPQIQPQQQFQQQQLSPQFQHQQ---PSPQI 91

Query: 227 QQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQS 286
           Q QQQPS     +FQQQ Q  Q  PQQQQQQ QQ  Q QQQ QQ QQ QQ       QQ 
Sbjct: 92  QPQQQPSP----QFQQQLQ-PQHFPQQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQ 151

Query: 287 QQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGE 346
           QQQQ Q   QQ Q Q Q Q Q  QHQSLASHFHLL+LVE LADAIENG RDQ ++  + +
Sbjct: 152 QQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVND 211

Query: 347 LNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKS 406
           LN+ FEKCQQLLNSI+G+++SKAMTVEGQK+KLEE E+LL  RR+LI  YK+SVEEL+K 
Sbjct: 212 LNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKG 255
[Close]
BLAST of Spo20437.1 vs. NCBI nr
Match: gi|590620311|ref|XP_007024500.1| (COP9 signalosome complex subunit 7 [Theobroma cacao])

HSP 1 Score: 149.4 bits (376), Expect = 1.300e-32
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 

		  

Query: 272 PQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIEN 331
           PQQQF    PQQ QQQ++         Q Q Q Q Q HQSLASHFHLL LVENL DAI+N
Sbjct: 38  PQQQF---HPQQFQQQRILH-------QQQQQQQNQHHQSLASHFHLLQLVENLGDAIDN 97

Query: 332 GNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLI 391
           G+RDQH++  I ELN+ FEKCQQLLNSIA +IN+KAMTVEGQK+KLEESE+LL QRRDLI
Sbjct: 98  GSRDQHSDALINELNNHFEKCQQLLNSIAASINTKAMTVEGQKQKLEESEQLLNQRRDLI 157

Query: 392 SNYKSSVEELIKSEP 407
           +NY  SVE+L+K+EP
Sbjct: 158 ANYGISVEDLVKTEP 162
[Close]
BLAST of Spo20437.1 vs. NCBI nr
Match: gi|565372946|ref|XP_006353046.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum tuberosum])

HSP 1 Score: 148.7 bits (374), Expect = 2.200e-32
Identity = 110/172 (63.95%), Postives = 124/172 (72.09%), Query Frame = 1 

		  

Query: 234 QTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQLQSPP 293
           Q   F QQQQ+       QQQQF QP  +QQQ QQ QQ QQQ   Q  QQ Q QQ Q   
Sbjct: 27  QDNLFLQQQQF-------QQQQFNQPQLYQQQQQQQQQQQQQRYQQQMQQQQMQQQQQQL 86

Query: 294 QQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSRFEKCQ 353
           QQ Q Q Q Q Q Q HQSLASHFHLL LVENLAD IENGNRDQH++  + EL ++FEKCQ
Sbjct: 87  QQQQQQQQQQQQ-QHHQSLASHFHLLQLVENLADTIENGNRDQHSDALVTELKNQFEKCQ 146

Query: 354 QLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSE 406
           QLL SI+G+I+S++MTVEGQKRK  E E++L QRRDLIS YKSSVEELI SE
Sbjct: 147 QLLTSISGSISSRSMTVEGQKRKKAECEQMLNQRRDLISRYKSSVEELINSE 190
[Close]
BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QET4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192790 PE=4 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 1.400e-166
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1 

		  

Query: 39  MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH 98
           MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH
Sbjct: 1   MDHHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHH 60

Query: 99  QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ 158
           QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ
Sbjct: 61  QQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQQQQQFVHPSPQQQSQQQQQPQQQQ 120

Query: 159 QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF 218
           QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF
Sbjct: 121 QYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF 180

Query: 219 VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH 278
           VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH
Sbjct: 181 VQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVH 240

Query: 279 QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA 338
           QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA
Sbjct: 241 QSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHA 300

Query: 339 NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV 398
           NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV
Sbjct: 301 NTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSV 360

Query: 399 EELIKSEP 407
           EELIKSEP
Sbjct: 361 EELIKSEP 368
[Close]
BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUV1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170690 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 6.700e-100
Identity = 278/376 (73.94%), Postives = 292/376 (77.66%), Query Frame = 1 

		  

Query: 41  HHQYGGGSWSMIPNIPTHTNLSTPSTQDPLFLSSQPQNQQQFNLQQQQTQQQQFGLHHQQ 100
           HHQYGGGSWSMIPNIPTH+NLST STQDPLFLSSQPQ QQQF++QQQ    QQFGLH+ Q
Sbjct: 4   HHQYGGGSWSMIPNIPTHSNLSTSSTQDPLFLSSQPQQQQQFHIQQQS---QQFGLHNHQ 63

Query: 101 QQQQFQSPQHQQFIQQSPQQQQQ-FVHPSPQQQLQQQ---QQFVHPSPQQQSQQQQQPQQ 160
           QQQ FQSPQHQQ+IQQSPQQQQQ FV PSPQQQ QQQ   Q FVHPSPQQQ       QQ
Sbjct: 64  QQQ-FQSPQHQQYIQQSPQQQQQQFVQPSPQQQQQQQHLQQPFVHPSPQQQ-------QQ 123

Query: 161 QQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQ----PQFVPPSPQ 220
           QQQ+VHPSPQQQQQQFV PSPQQQQQQFVH SPQQ QQFV  SPQQQ    PQ   P  Q
Sbjct: 124 QQQFVHPSPQQQQQQFVHPSPQQQQQQFVHASPQQHQQFVQQSPQQQQQQQPQQFQPQTQ 183

Query: 221 QQQQQFVQQSPQQQQQ--QPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQ 280
           + QQQFVQQSPQQQQQ  QPSQ+Q Q  QQQQQ  QQ  QQ  QQ             +Q
Sbjct: 184 RFQQQFVQQSPQQQQQFQQPSQVQQQSSQQQQQQPQQLVQQSPQQL------------VQ 243

Query: 281 QPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIE 340
           Q  QQ V QSPQQSQQQQLQSP QQ           QQHQSLASHFHL+NLVENLADAIE
Sbjct: 244 QSPQQLVQQSPQQSQQQQLQSPTQQ-----------QQHQSLASHFHLVNLVENLADAIE 303

Query: 341 NGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDL 400
           NG RDQHA   IGEL+SRFEKCQQLLNSIAG INSKAMTVEGQK KLEESERLL +RRDL
Sbjct: 304 NGTRDQHAEALIGELHSRFEKCQQLLNSIAGKINSKAMTVEGQKHKLEESERLLNERRDL 345

Query: 401 ISNYKSSVEELIKSEP 407
           ISNYK+SVEELI+SEP
Sbjct: 364 ISNYKNSVEELIQSEP 345
[Close]
BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Match: A0A061GDA6_THECC (COP9 signalosome complex subunit 7 OS=Theobroma cacao GN=TCM_029049 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.200e-33
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 1 

		  

Query: 272 PQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIEN 331
           PQQQF    PQQ QQQ++         Q Q Q Q Q HQSLASHFHLL LVENL DAI+N
Sbjct: 38  PQQQF---HPQQFQQQRILH-------QQQQQQQNQHHQSLASHFHLLQLVENLGDAIDN 97

Query: 332 GNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLI 391
           G+RDQH++  I ELN+ FEKCQQLLNSIA +IN+KAMTVEGQK+KLEESE+LL QRRDLI
Sbjct: 98  GSRDQHSDALINELNNHFEKCQQLLNSIAASINTKAMTVEGQKQKLEESEQLLNQRRDLI 157

Query: 392 SNYKSSVEELIKSEP 407
           +NY  SVE+L+K+EP
Sbjct: 158 ANYGISVEDLVKTEP 162
[Close]
BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Match: A5B4B2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02270 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.800e-32
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 1 

		  

Query: 259 PSQFQQQTQQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHL 318
           PS       Q QQPQQ  ++Q     QQQ+L    QQ Q Q Q Q Q   HQSLASHFHL
Sbjct: 25  PSDQDHLFLQQQQPQQHHLYQH----QQQRLHH--QQQQQQQQQQQQHHHHQSLASHFHL 84

Query: 319 LNLVENLADAIENGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLE 378
           L+LVENL+DAIENG RDQH++  + ELNS FEKCQQLLNSI+ +IN+KAMTVEGQKRKLE
Sbjct: 85  LHLVENLSDAIENGTRDQHSDALVRELNSHFEKCQQLLNSISVSINTKAMTVEGQKRKLE 144

Query: 379 ESERLLLQRRDLISNYKSSVEELIKSEP 407
           ESE+LL QRRDLI+ Y++SVE+LIKSEP
Sbjct: 145 ESEQLLNQRRDLIAKYRNSVEDLIKSEP 166
[Close]
BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Match: A0A067L0N4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24762 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.300e-31
Identity = 109/177 (61.58%), Postives = 127/177 (71.75%), Query Frame = 1 

		  

Query: 230 PSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQL 289
           P+     +F   QQ  QQ  QQQQ QF Q  Q QQ  QQ QQ QQQF  Q  QQ Q+   
Sbjct: 23  PAHSNQDQFYLHQQQSQQ--QQQQPQFNQFQQQQQFQQQQQQQQQQFQQQQQQQQQRLIQ 82

Query: 290 QSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSRF 349
           Q PPQQ+          Q HQSLASHFHLL+LVENLA+ IENG RDQH++  + ELN+ F
Sbjct: 83  QQPPQQN----------QHHQSLASHFHLLHLVENLAEVIENGTRDQHSDALVNELNNHF 142

Query: 350 EKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSEP 407
           EKCQQLLNSI+ +INSK+MTVEGQKRKLEESE+LL QRRDL++ Y++SVEELIKSEP
Sbjct: 143 EKCQQLLNSISSSINSKSMTVEGQKRKLEESEQLLNQRRDLMAKYRNSVEELIKSEP 187
[Close]
BLAST of Spo20437.1 vs. ExPASy Swiss-Prot
Match: MED9_ARATH (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.100e-26
Identity = 130/261 (49.81%), Postives = 154/261 (59.00%), Query Frame = 1 

		  

Query: 145 QQQSQQQQQPQQQQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQFVPPSPQQQP 204
           QQQ  QQQQ QQQQQ  H    QQQQQ      QQQQQQF    PQQQQ+      QQ  
Sbjct: 36  QQQQLQQQQQQQQQQQFH---LQQQQQ-----TQQQQQQF---QPQQQQEM-----QQYQ 95

Query: 205 QFVPPSPQQQQQQFVQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQQFQQPSQFQQ 264
           QF      QQQQ F+QQ              Q+FQQQQ+ + QSP  Q Q  Q P     
Sbjct: 96  QF------QQQQHFIQQ--------------QQFQQQQRLL-QSPPLQPQSLQSP----- 155

Query: 265 QTQQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVEN 324
                  PQQ  VH     + Q  + +P QQ Q        PQQHQSLASHFHL  +VE 
Sbjct: 156 ------PPQQTMVH-----TPQSMMHTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEK 215

Query: 325 LADAIENGNRDQHANTSIGELNSRFEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLL 384
           LAD IENG RDQ+++  + ELNS F+KCQQLLNSI+G++ SK MTV+GQKR +EESE+LL
Sbjct: 216 LADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLL 243

Query: 385 LQRRDLISNYKSSVEELIKSE 406
            QRRDLI  Y+ S+EE++  E
Sbjct: 276 QQRRDLIVEYRKSIEEIVTME 243
[Close]
BLAST of Spo20437.1 vs. ExPASy Swiss-Prot
Match: CYAD_DICDI (Adenylate cyclase, terminal-differentiation specific OS=Dictyostelium discoideum GN=acrA PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.600e-9
Identity = 132/243 (54.32%), Postives = 136/243 (55.97%), Query Frame = 1 

		  

Query: 75   QPQNQQQFNLQQQQTQQQQFGLHHQQQQQQFQSPQHQQFIQQSPQQQQQFVHPSPQQQLQ 134
            Q Q QQQ   QQQQ QQQQ     QQQQQQ Q  Q  Q IQQ   QQ Q+V   PQQQ Q
Sbjct: 1865 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSQNIQQPQSQQSQYVQ-QPQQQQQ 1924

Query: 135  QQQQFVHPSPQQQSQQQQQPQQQQQYVHPSPQQQQQQFVQPSPQQQQQQFVHPSPQQQQQ 194
            QQQQ      QQQ QQQQQ QQQQQ     PQQQQQ       QQQ QQ   PSPQQQQQ
Sbjct: 1925 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQL----QQQQQHQQQKQPSPQQQQQ 1984

Query: 195  FVPPSPQQQPQFVPPSPQQQQQQFVQQSPQQQQQQPSQIQTQRFQQQQQYVQQSPQQQQQ 254
               P  QQQ Q      Q Q Q  +Q   QQQQQQ  Q Q Q+ QQQQQ  QQ  QQQQQ
Sbjct: 1985 PQQPQQQQQQQI-----QNQYQHQLQYQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 2044

Query: 255  QFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQLQSPPQQSQSQSQSQSQPQQHQSLAS 314
            Q QQ  Q QQQ       QQQF  QS Q  QQ Q Q   QQ QSQ QSQ Q QQ Q  + 
Sbjct: 2045 QQQQQQQQQQQHHHHHHQQQQFQQQSQQSQQQSQQQQQQQQQQSQQQSQQQSQQIQKKSQ 2097

Query: 315  HFH 318
            H H
Sbjct: 2105 HPH 2097
[Close]
BLAST of Spo20437.1 vs. TAIR (Arabidopsis)
Match: AT1G55080.1 (MED9)

HSP 1 Score: 124.8 bits (312), Expect = 1.200e-28
Identity = 120/236 (50.85%), Postives = 147/236 (62.29%), Query Frame = 1 

		  

Query: 179 QQQQQFVHPSPQQQQQFVPPSPQQQPQFVPPSPQQQQQQF----VQQSPQQQQQ-QPSQI 238
           Q Q  F  P+   QQ F+     QQ Q      QQQQQQF     QQ+ QQQQQ QP Q 
Sbjct: 18  QAQGNFGTPTNHDQQLFL-----QQQQLQQQQQQQQQQQFHLQQQQQTQQQQQQFQPQQQ 77

Query: 239 QT----QRFQQQQQYVQQSPQQQQQQFQQPSQFQQQTQQLQQPQQQFVHQSPQQSQQQQL 298
           Q     Q+FQQQQ ++QQ   QQQQ+  Q    Q Q+ Q   PQQ  VH     + Q  +
Sbjct: 78  QEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSPPPQQTMVH-----TPQSMM 137

Query: 299 QSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSRF 358
            +P QQ Q        PQQHQSLASHFHL  +VE LAD IENG RDQ+++  + ELNS F
Sbjct: 138 HTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHF 197

Query: 359 EKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSE 406
           +KCQQLLNSI+G++ SK MTV+GQKR +EESE+LL QRRDLI  Y+ S+EE++  E
Sbjct: 198 DKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243
[Close]
BLAST of Spo20437.1 vs. TAIR (Arabidopsis)
Match: AT1G29580.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 4.400e-10
Identity = 50/118 (42.37%), Postives = 61/118 (51.69%), Query Frame = 1 

		  

Query: 289 LQSPPQQSQSQSQSQSQPQQHQSLASHFHLLNLVENLADAIENGNRDQHANTSIGELNSR 348
           +Q P   +  Q QS   P QHQ+LASH  L  LVENL D  E+  RDQ            
Sbjct: 1   MQKPQSHTTQQQQSVQTPLQHQTLASH--LYPLVENLKDVTESRARDQ------------ 60

Query: 349 FEKCQQLLNSIAGTINSKAMTVEGQKRKLEESERLLLQRRDLISNYKSSVEELIKSEP 407
                          NS A+ V+ QK+ LEESE+LL QR +LI  YK SVEE++K EP
Sbjct: 61  ---------------NSDALYVDVQKQNLEESEQLLQQRMELIEEYKKSVEEIVKKEP 89
The following BLAST results are available for this feature:
BLAST of Spo20437.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902147678|gb|KNA05173.1|2.0e-166100.hypothetical protein SOVF_1927... [more]
gi|731348251|ref|XP_010685401.1|9.6e-10073.9PREDICTED: mediator of RNA pol... [more]
gi|659093591|ref|XP_008447610.1|1.2e-3361.1PREDICTED: mediator of RNA pol... [more]
gi|590620311|ref|XP_007024500.1|1.3e-3267.4COP9 signalosome complex subun... [more]
gi|565372946|ref|XP_006353046.1|2.2e-3263.9PREDICTED: mediator of RNA pol... [more]
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BLAST of Spo20437.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QET4_SPIOL1.4e-166100.Uncharacterized protein OS=Spi... [more]
A0A0J8BUV1_BETVU6.7e-10073.9Uncharacterized protein OS=Bet... [more]
A0A061GDA6_THECC9.2e-3367.4COP9 signalosome complex subun... [more]
A5B4B2_VITVI7.8e-3265.5Putative uncharacterized prote... [more]
A0A067L0N4_JATCU1.3e-3161.5Uncharacterized protein OS=Jat... [more]
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BLAST of Spo20437.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MED9_ARATH3.1e-2649.8Mediator of RNA polymerase II ... [more]
CYAD_DICDI4.6e-954.3Adenylate cyclase, terminal-di... [more]
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BLAST of Spo20437.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G55080.11.2e-2850.8MED9[more]
AT1G29580.14.4e-1042.3unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011425Mediator of RNA polymerase II transcription subunit 9PFAMPF07544Med9coord: 326..398
score: 2.
NoneNo IPR availablePANTHERPTHR37188FAMILY NOT NAMEDcoord: 227..406
score: 1.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010015 root morphogenesis
biological_process GO:0019915 lipid storage
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0006281 DNA repair
biological_process GO:0048825 cotyledon development
biological_process GO:0051301 cell division
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0016567 protein ubiquitination
biological_process GO:0016579 protein deubiquitination
biological_process GO:0000338 protein deneddylation
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0043966 histone H3 acetylation
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0048856 anatomical structure development
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0030001 metal ion transport
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006364 rRNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0048229 gametophyte development
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0048575 short-day photoperiodism, flowering
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0050826 response to freezing
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0009908 flower development
biological_process GO:0016571 histone methylation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009888 tissue development
biological_process GO:0043247 telomere maintenance in response to DNA damage
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0006396 RNA processing
biological_process GO:0010332 response to gamma radiation
biological_process GO:0032204 regulation of telomere maintenance
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0050832 defense response to fungus
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0080147 root hair cell development
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0032502 developmental process
biological_process GO:0010104 regulation of ethylene-activated signaling pathway
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0009733 response to auxin
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016592 mediator complex
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0044434 chloroplast part
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0010484 H3 histone acetyltransferase activity
RNA-Seq Expression