Spo13550 (gene)

Overview
NameSpo13550
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProtein Ycf2
Locationchr5 : 42008405 .. 42024616 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAATTTAACCGAGGTTTGCGGCGGTGGAGGAACTGGATCGGAAAAAGGAGGGATTCTAGTTATAACATATCTAATGAATCCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCCAATATCTAGAGTTTCCCTTTGTATATTATATGGATGATCCGATCCCTAACGACCAGGATTGGGAATTGTTTGATTGTCTTTCTCTTTTTTTGAGGAACGTATAGAGAGAGAATTGGATTTGGATAGACAATATGCGGTTGGTAAATAAGGATCGGTTTTTTTTAGCAAGGAACGGAATGTATCGTCAAATATTCAATATGATTTCACAAGATCTAGTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGAATCTTCTGATCAATCTAGAGATCGTTCGAATTCTATTAGTAATGNTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATATGATTTCACAAGATCTAGTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGAATCTTCTGATCAATCTAGAGATCGTTCGAATTCTATTAGTAATGAGGATTCGAAATATCACACAAAAATCAATAAAACAGAGATTCGACAACTAAAAGAAAGATATATTCTTCGGGATCCATCATTTCTCCAAACGGAAGGAACAGAGATAGAATCAGACCGATTCCCGAAATACCTTTCTGGATATTCCTCAATGCCTCGGATATTCACGGCACGTGAGAAGAAGATGATTATTCATCAGCTTCCGGAAGTAATCGAACAACTTCTTGAGAATCCTACAAGATTTATTCGTTCTTTTATCTCTGGAAGATGGTCAGAACTTCATATGGGTTCAAATCCTACTCAGAGGTCCACTAGAGATCCACAATTTTTAAAGAAACAACAAGATGTTTCTTTTTCCCCTTCTAGGCAATCGAAAAATAAAGAAATGGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCAAGATANTTAAGTATTTACAAAATACCGTCTCAATTCCTCCTATTTCATCAGATCGAGGATGTGATATGGTTCCAAAGGATGAATTGGATATGGACAGTTCCGATAAGATTTCATTCTTGAACAAAAAATCATTTTTTGACATATTTCATCTATTCAATGACTGAAACAGGGGGGATACGCAGTACACCGCGATTTTGAATCCGAAGAGAAATTTCAAGAAATGGCAGATCTATTCACTATATCAATAACCAATCCGAATCTGGTGTATCATATGGGATTTTCCTTTTCTTTTGATTCCTGCGGATTAGATCAAAAAAAAATCTTGAATGAGGTATTCAACTCCAGGGATGAATCAAAAAAGAAATCTTTATTGGTTCTATATCCTATTTTTTATGAAGAGAATGAATCTTTTTTATCAAAGGATCCGAAAAAAAGGGGCTCGAATCTCTAGGAATGTATTTATCGTTTCTTATTAATAAATAGATCTGATCGCAGCTTCGAATATGGAATTTAAAGGGATCAAATAGGAAACGATACTTTGAATAGGAAATGATACTTTGAATCATAGAACTCTAAGGGATTAAATAGGAAACGATACTTTGAATGAATTCAAAGGGATCAAATAGGAAAGGATACATTGAATCATAAAACTCTAAGGAAATATATGATCAACCAAGATCACTCGAATTCGAAAAAGAGTCTGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCAAGATATTCATGAATCGGGATCCTGATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTACATTTGGAACATTTTGTCTCTAAGCAGAAGAGTTGTTTTCAAGTAGTGTTCGATCAATTACGTATTAATAAATATTCGATTGATTAGTCTAAGGTTATTAACAAAAAAAATATATTCTACGTCACTTCGTTTCTTTTTGTCCAAGTCACTTCGCTTCTTTTTGTCCAAGTTGCTTTTCTTTTTGTCTAACTCACTTCCTTTTTTTTCTTTGCGAGTTTCGGGAATATCCCCATTAATAGGTCCGAGGTCCACATTTATGAATCGAAAGGTCCGAATGATCAACTCTACAATCCGTTGGTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAAATGAAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAAGTTCTTAATCAATGGAGGAACCATATCACCATTTTTGTTCAATAAGATACTAAGGTGGATGATTGACTCATTCTATACTAGAAAAAATAGCGGGAAATCCTTTGACAACACAGATTCCTATTTCTCAATGATATCCCACGATCAAAACAATTGGTTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATCTTATTTTTATAAAGCAATCAACTTCGATTCTTGAATAATCCACATCACTTATGCTTCTATTGTAACAAAATATTCCCTTAATTTTTATATGGAAAAGGCCCGTATCAATAATTTAGGTTTTACGTATAGATAATTCCTTAATATCTTGTTCATTCACAACAAACTATTTTCTTTGTGTGTCGGTAAAAAAACATGCTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTCACATGTATCTAACATTTTCTTACCTAACGATTTTCCCATTCTATCCGATCTATTAGTTCTTTTAAGGGCAGCTTAAGTCACCTCCGGCCCGGCAGCCTCTGGTAACTCTTCCTCAAGGACATACTCTTTTTCCTCATGCATTAGAACTATTTGCAAGTTCCTTTGCCAATCGAGGAAATTATTGCCATTCAACTTCTCCTTGTCGAGAATTGAACGTAAATTGAACGAGTTGTTATTGTTTGCGGCCATTTGATTACTACATTTGAAAAGAATTCGCAATAAATAACCATTCATAACCTTTAATAACTTTGAAATAAATGCGATCATGCAATCATGAAAGCTATTAAACATTTCATTCATGCAAAAGTAAAACATGGTCCAAAATTAAATGAAACGATTGCAAGATCCTAAAAGTCCTAAATCCTGCAGCTTTGGCATGTCGTAAGTCTTTTAAGATTCTAGGTAAGCAAAACCTATTGCTAGTAATCTCCAAATTACTCTTGGTTAATAAATTAATTCCATAATTTATTCCTTTGCCACAATATATGCCATTGTTGTTTGAGTTAAAACCACAATCAACGTGTTCCTTTGGGATACTTTACCATCTAAGTCAACTAAAATAGCACCTGGATTTGGCGGAAACCTACTACCTTAGATCTGTAGATTTTTGTAAGTGCTTGATTTGGAAGGCAATTTTAAACTCAATATTACTTTGGACCTAGTTGTTTCTATGTTGGTTCGATTATTTAGTGAACTAAATCTAATCGAGCATACAAACAACATTCATGCATAATATACATTCATTCATAATATATATAGTGCATAAATTAATTTTGGTGAACTAGTATGGCCCAAAATTTTATCTTGAAGCATCCAATCTTCTATCACCTTGTTAGCTTGGCATCATCTTGAACTTCATTCAAAAGCTAACTTAAAGTTCTAAACTTCCTAGAAATACTTGAAATAATTAAATAATTACATCAAAATTTCAATGGTACGCAGACCATATTTAATACTTTACATTCAAAGATAAAACGGTACACATACCGTATTTAACTATCCTAGATTGGCCATACCAGTCACCTTGAATACCTGCAATACAAAAAATATTTTCTATGCACTCATCCATTCGTGTCCTATAACGAATGGCCCAAATAAATATGCAAGTATTTACATGATTTATTTAAAAATCACGTTCACATAAAACGCGTCCTAAAAGATTAATCAATTCCGAATTATTAATCCTTAGAATTATTCTAATCAAAATTTAATTTAATTAAAATAATGGTGCCTACGAAAATAATTAAATTTAATTATTTCATTTAATTTCATTAAATGGCTCCTACTTAAACCAATATTTTAATTTGGATAATTTAATTTTAAATATTTAAACTTACGGCCCAGCCCAAGTCAAATAAAATCAAATAAATAAAAAATCCACCGTTAGCCATTTCATGCGAAAATTAAATTCAAAGCTCAAACGAAGCAAAATCGCCAATTTGTTCAACATGGGCTAGGCTTGCGCCCAGCCCAATGTTGCCTAGTGCATTGCGTGCCATACGAGGCCTCGAGGAGCATCGCCCCTCCCCCGCATAGCACAGCGCACAGCTCGCAGCTACGTTGCTGCTGCTGCTGCTTTGCTCGTCGCTGCTTGCAAGCCAAGGCCAGCGCTGCTGCCTTGCTTGCTCGTTGCTTCGTTGCTGAGCCAAGGCATTGATGCTACCTTCGTTGTTGTGGCCAGCGCTCGCTTGTTGGCTGCCTCGCGTTGCTGCACCAAGCTGCGGGGTGCGGCGCGCATGGGCTACGCCCATCCACACACGCCTCACACCCTTTGTTCTATGCCTTTGGCTTGTGCCATACGAGCCAATTAACCAAAAAAAAATTAATTTCACGAGACGTTATTTGCATGACGTTATTTTTCTTAAAATTAACAAAATTAATCATTTTGTTTTTCGAAAAATAACAATGTGGGTGATTTAATTAATTTTCGAACAATCCAATTTTGAGAAATTTATAAATCTTGGCTAACAACATTCAAATTTAACGAACGATCAATATCAACAAAAATTTTAATATGTTTGATAATCCAATCCAAAATTTTAAATCGTTCTAAACATTTAAATTTCAGATTTTTATCAAATTTGGTTTAAGTGATGATTAAAATTAACGAATCTAATCAAAAATTTAATCCATAAATTTTTTAAAACTTCCACTTAACATGAAATTATATTCCCTTTCCCAATTAAACAAATTTCCAGATCTACATTATTTTTAAAATCAATTTACGATCTACAAATCACCAATTTAGTGGAAAAAAAATTAGGGTTTATGCTTAACATTTATGGCCAAAAATTTTACCATAATTTTTTAAAATTTACCCAAGAACAGTAGGGAAAAATTTCGATTAATTCGGAGTAGTTTAGGTCAAGCAATTAATTGAAAAACTTTCCAAAATTGTTAATTTAATTCATTAATTAACAAAAACGCCCAAAAACTCATACTTCAGGGCCTATTTTAGCGATTCTGTTCTCATTAATTAATCTTAAAACGCCGTTTTCAATCAGATTAGGGTCAGAAAAATCGAATTTCTGACATTTTACGAATTCAGAACATATTCTACGATCTATCCAATAATCCAGAAATATTTCGTAAATTCATGAAAAACTTCGACAACATCACGAACATATTAACATGCCAAAAATTACTTTAAATACATGTTGCTATGATACCACTGTAGGGAAATACATTTAAATACATATTAACACAGCGGAATAATCCCCAAAGCCAGGAACCAGGTATAAAATACAGATTAAGCAGACTTACATTTGTAGCATATTTTCCCTTGTTCAACGAATCACGAACACGAACAAGAACTTCAAATGTCGTTCCTCTACTTGGTTCACCGACACGTTCAGATCCGTCTTGAGATTCGTAGCTTAGACGTCACTCAAGATATTTTAGCTTTTAGGGAAGAACAGTTTGAACGGAGGAAAAAAGAGAATAGGGTTTCTCTTTTTGGTTAAAACTGATGTACGTGAATTAGTTGTGTGTGTGTGCAAAAACATAAGGAGAGGTGAGGTTTTATAACCCTAAAGGTTATAACATGACCGGCCAAGGCACAAGGCCTCAACCGGCCAGCTTCACGCACAAAGCCCACGAAGCAGCGCGTAAAAAGCAACGCAGCCATGGACCTTGGGACTCGCTGCTGCTTGCTGCCAGTGCTGTTGTCCACGCGCACCCAGCCGCAGCTTTGCAGGCCTTGCTCTCGCGCTGGCGAGCTGCTGGCTCGTTGGGCCTTGCGCGCTTGCGCGCTTGGCTCGATGTGCCGGTAGTCTTGCCTTGCTTGTATCCGCGACCAATGCCTTACGGCTATTGTTTATCGCATAGTACTTGACGAATCACCGTAGTACAATACGATTATTCGTTTCGCTTAGCTTACGAATATTTGCAATACGATATACGATTCTGATCCAACATCATATCCGTATATTTATGTTTTTCCGAACTAATTCCCGAAAAGCTATTAAATGAATTTCCGATTCACTTAATCCGACGATCAGTTACATGCCAATGGTGTGACCTTATAGGTTCAGTCAAGAGTAAGTTGTGAGCCTAATATAGATTAGAACTCACTGATCGGAAGCATTTCTCCAGCTAGCTGTTCCGATCACTTGATCTCACTGAATTAATTGTTCGTAATTAATTTGAACCTTGGTATTAGACTAATGCACCTTGGGTGAAGCACATATTTCCTTCAATTTAGTCAATTTAAGCACATTTATGGCTCTTTCGATCCTTATATGTCATATTTTGACAAAAATAGTTGTTTTCGATCCCAATTCTCAACTAATGAACCAAAATAAGAATTCTTAACCCTTTACATGTTTAAAATACTTAGTATTAGGCTGTCATTCCCCATTCTCATCTAATTTAGTCAATTTAAGCACATTTATGGCTCATTCGATCCTTATATGTCATATTTTGACAAAAATAGTCGTTTTCGTTCCCATTTCTCAACTAATGAACCAAAATAGGAATTCTTAACCATTTACATGTTTAAAATACTTAATATTAGGCTTCCAAACCCCATTCTCATCTAATTTTGTCAATTTAAGCATATTTGTGGCTCGTTCGATCCTTACATGTCATATTTTGACAAAAATAGTCGTTTTCGCTCCCAACTCTCAACTAATGAACTCAAATAGGAATTCTTAACCTTGTACATGTTTAAAATACTTAGTAATAGGCCGTCAATCCCCATTCTCATCTAATTTAGTCAATTTAAGCACATTTATGGCTCGTTCGATCCTTATATGTCATATGTTGACAAAAATAGTCGTTTTTGCTCCCAATTCTCAACTAATGACCCAAAATAGGCTCATTTATGGCACTAAGGTTCATCTGTTGATATTTGAGATCAAAAATGTCATTTTGGGCCAAATATGACCTATATCGTCTCAAATGACCTTTATGTGTGCATATATAATTTGAAATGAATCTTGGAAACCTCTAACTAAGCATATGAAACATAAAAAAGATTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTGGGCCCAATATGACCTATATCGTCCCAAATGACCCTTAGATATGTATAAAGAACTTGAAATGAATCTTAGTAACCTCTAACTAAGCATATGAAACATAAAAAAGATTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTTGGCCAAATATGACCTATATCGACCCAAATGAACCTTAGATGTGCATAAAGAACTTAAAATGAATCTTAGTAATCTCTAACTAAGCATATCAAACATAAAAAATATTTAGAAAGTGTCCTTAGGTTCATTTGTAGATATTTGGGATCGAAAATGGCATTTTTGGCCAAATATGATTTATATAGAGCCAAATAAGCATTAGATGTGCATAAAGAACTTGAAATGAATCTTAGTAACCTCTAACTAAGAATATCAAACATAAAAAAGATTTAGAAAGTGTCCTAAGGTTTATTTGGTTATATTTGGGATCGAAAATGCAATTTTGGGCCAAATATGACCTATATCGTCCCAAAGGAGCCTTAGATGTGCATAAAGAACTTGAAATGAATCTTAGTAACCTCTAACTAAGCATGTAAAACATAAAAAAAGATTTAGAAAGTGTCCTTAGGTTCACTTGTTGATATTTGGGATCGAAAATGCCATTTTGGGCCAAATATGACTTATATCGAGCCAAATGAGCCTTAGATGTGCATAAGGAACTTGAAATGAATCTTAGTAACCTCTAACTAAGCATATGAAACATAAAAAAGGTTTAAAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCTATTTTTGTCCAAATATGGCCTATATCGCGCCAAATGAGTCTTAGATGTGCATAAATAACTTGAAATGAATCTTAGTAACCTCATAAAGTTGTTTTCGCTACCATATGTTTTTGCATATGAAACTTAATTTAATTTATTGGTTTGCATGTACATTGTTCTTTTAAAGGTTTTCAAAACTCCAAGGGAGGGGCCCTTTACCAAAGAGGAGTTGCATGAAGTTCGAGACAAGTGGGCTACTTACTTCAACGATTGTGAACTACCCTCAGTGTAAATAGAGCAGGCTTGTAGTTATCCGTGACTATTATATTACTTTGTTATTTATTGATTTAATTAATTACATTTGAATTAATTCGGTAAAATTATTGTAAATTTGAAATTTATATCATTTTTGAGGAATGTCAAGCTGATGTTTGGTGAAACAGTATACTATAAATTATAATGCAGAATTTTATATTGCAAAATCAGAAATTATATTGCAGAATCAGGAATTATAATGCAGATTTTTTTTTTTTTTAAAAAAAAAAAACTCAAAGGTTGCTCTTGTTTGCAACAAGAGCAACCTATGTGAAGCTTATAGGTTGCGCTGGTTGCAAACAAGCCCAACCTTTAATAGGTTCAAAGGTTGCGCTTGTTTTCAACCAGCACAACTTATAAGCTTCACATAAGTTGCGCTGGTTGCAAACAAGCGCAACTTTTGAGCTTATAGGTTGCGCTTGTCCAGCGCAACTTTTGTTAATTTCACAAATGTGACCATGCCATATGATGCCCTTATAAAGCGCCACCTATAAGCCTATTTCAAGCGCCACCTTTGATGTTTTTTCTTCTAGTGTTAGTATATGATCCACATGTTACTTTATATAATAAATGATGTTAATTTTAAGGTAATTGCAAAACGTACCTTCTCTATTGCTTGGTCTTGGTCTGTAAACACATAAATAGGTGCTACATGTCTCATATATTTCAAAAATGTTTTTAGAAGCCATATAAATGAATCTGCTGTTTCATCTCCAAGGAAAAAACAACCGAACATTGAAGTTTTCCAATGGTTGTTTATGCCGACAAAAAACCCACAAGCGAGTTTGTATTTTTTGGTTCGGTAAGTTGTATAAAAAATAGTAACATTTCCATAGGATAAATAGTCTTCTCTCATAATAGAATCTCTCTAGAATATACTTTCCGATTTTCCATTTTCTTTTAATCGAAATCGAAAAAGTACATCTGGATCATCATATTGTAGGTTATATAAATTGTCATTGACATTCTGTGCATCAGAACCTTCAATTTCCTTCATCTTATTTCTTCTCACAAAGTTCAATTGGTCTTTTATTGAGTGTCCAACAGCTTCTTCACCTACAATAAATAAAAAATTTATAATTTTTATTTTCATTTTATAGTTACTTAGAAAAATATATTTTCATATAATTGTTAAGATTTTTACCTCCTGCTTCTTGACACATAACCTTGTATGATTGTGTAGGCTTTAATCCACTGTCATCTAGTAAATCTATTGTCTTAGCCTTGTCCCCGTGATTTTCCTTTCCGATCTGTGCATATGCTGCCAGTCCTTTCTAGTAAACTGATGATTATGCACGAGGACATGCTCAATTATTTCAAATAAGCCATCTTTATTTATTTTTGCCCTTATATAAGCTCTGCTCCTTGTTCTTGTAATAGGAACTTTCTTGCCTTTCTTTTTCTTTTTATTGTCAGTTAATGTAGGATTGCTTACTTTTTTGTTGTTTTTGCATCTGAAGCCTTCTTTGTTACATACGAAATTTTTCGTACATTACTCTTGTTTTAGAATTTAGTCGATGTGTAGACAGTCTTACACCAAAACCTAAAGCTTGTGCATGCTTTTTGTAAACTTTAAATATGTCTTTTATATTTGCTTCTATATGCCCCAGTAAACTTCCAGAGTAATCCTCATCATCTTCTTCTGTATTTGTTTAACAAGCACAAACAAAATTTGTATAGTTTATTTTGTTACTTTTGTATTTTAAGGATCATTACCTTTATAGAGGTAGGATTGTTACTTATATAAAAATACAGTGTAGGTACATTTATATTATTACTACAGCTAAATGTTTATTTTTAATGTTAGAGCTGTTACACCAATTAATTATAGTATTGGGGCTGTTAGTTTTTTTTGTTTAAGGCCAATTACTTTTATAGTGTTAGGGCTGTTACTTATACAATTAAGGGCCGACACTTTTATAGTTTTAATGCTATTATCAATACATTAGCTTTATAACTAGTATAATACCCGTGCGATGCACGATATAATCATCTAAATATAAATTTGTATGAAATCTGGTAGACAATATCATCAAAATAGTACTTATGGATATTTTCCAAATTAAAACTAACCAAATTAAAACTAAGGATGGATAAATTTGTTGTTGCTCATTCAATTTCTTATTTATTAAAACAAATAAGGGTAGATATATAAATAAATAAATTATTCCCACTTGTGTCAAGCATAAAATTATTTCGTTTACCCTTTACTAATTGGATAGTAATACCTACTTAATACTCGCACGGTCACCCCCATCAACCTCATTACCTAATCACTTAGCACCTACACACACCACTTACTTTATTCATTTAGAGATGACTTGAGGCGGGGTTGGCTCTGCAGACACGTATCCACCAACAATTCTCTTCCCCATCTTTTCCATCAACAATAGGAACGATAGCCACCACCCCCAATCCACGTCTCGGGAGGTACAAAATAAATTTCATCCCCANTATACCCACACCCGCCTCAAACCCATCCTTAGGTTCAACTCTTTTTTTTATAAGAGTTTTTTTAAAATATATATATAATCAATTAGATGAAGATTAACGACGCAGACAGGTCCAATCTAAAATCCACCATCGCCCCGTCGTCACCTGTGACGAATTCATTTTTTAACCCCGTCACCCACCAAACTTTCTTCAACCCCGCCCCACTTGGGAAGGATGCACGGGGGGATCTCCCAAAAAAACCCACTGACATCCCCATATTCGATAAATAATCCACTTTTCCTTTCAACTAACTTTTAAATATATTGACATAAGTTTATTACGAAGTATTAAAATTGATTGTTTTAGCTATAATATTGATGAAAATATAAAAAAGTGACATACATAATTAGGAGGTGAGTATTCTCAAATCCAATCGATTCAAACTCGCCCCATTCGATGCACGATTTATGATATGAATATTAAATTTGCATATCTAAACTATAACTATAGACAATTATTATCGAAATAGAGCTTATAGATAATTTTCTTCTTAAACTAATGATTGCTCGGTATGTTACTGCTCATTCCATGTCTTATTTATTTAACAAATTCTAAATAATAAAATAAGGGCACGTAGATAGATTTACGTTCTTCCTCTTTCATAACAAACCATGTCAAACATAAATTTATTCGCATCCATTCTTTACTTCGATAGTCATACCCACTTAATTCATAAATCATCTAAATCATTACCCGATCATTTAACACCTACCCCACCATATATTTTATTCAGCTAGAGATATCTTCGAAGCGGGGTGATGCTGGTCCCTCAACACAACCTGAAATTCCCATTCACATGCCCGTCACCACGATAGGTGTCATACTCATCCCAGTCCTAATTCCCGCCTCGTAAGAAAAAAATAAAATTAACCCCGCTTCATCCCCGTCCGTGTATCTACACCCGCCTCAAACCAAGCCCTGGACGGCTTGACCCGACATTATTTTTTGATAAGAGAGCTTTGAATTTTAAAACTCTAAGAGTATTAGACAATTTGGTTGTCTGGTTACATTATACTTTAGACACAAATAACTTATAGATATTTTCCTAATTAATTAAAATTAATGATGGATAAATTTCGGTGTCTTATTTATTTAAAAAAAGAACCAAATAAGGGTACATAGACAAAATTATTTTCCTCCATATTCATCACACGTGTCAAACCTACTCCTAGACGACTGAACCCGACATTATTTTTTGGTAGGAGAGTTTATTTTAAAACTCTATTCTAGAGTATTTGACAATATTGTTGTCTGATTACATTATAATTTGGACACATATAGCTTATGGACATTCTCCTAATTAAAACTAATGATGGATAAATTTTTATTGCCCATTTGGTCTTACTTATTAAAAAATAAAAACAAATAAAGGTACATAGAACAAATTATTTTCATCCCCACTCATCACATGTGTCAAACCTAGCCCTAAACGGCTGAACTCAACATTATGTTTTGGTAAGAGAGTTTTGAATTTTAAAACTCAAATCTCAATTTGGTTATCTGGTTACACTATACTTTGGACACAACCTTATAGATATTCTCTTAATTAAAAATAATGATGAATTTTTTTTCTATTTCCCCATTCGGTATCTTGTTTATCATAAAAATAAAGTCAAATAAAGGTACATAAACAAAGTTATTTTCATCTTTATTCATCACATGTGTCAATCATAGTGTTATTCTCATCCATCCTTTACTTTGATGGTCACATGTGTCAATCATAGTGTTATTCTCATCCATCTTTACTTTGATAGTCATATTTATATCATTATCCGAGCACTTAACAACTACTCCACTATTTTATTTATTCAGCTAGTCATGACTTTGAAGCTGGTCGGAGTCTCCACACTCGTACTCGTCCAAAATTCTTATCTCTATTCCCGTCACCCACGATGGGAAAAGTACTCACCCCTCCCAATCTCCTTCTAACGGGTTAAAAGTAAAACTCATCCCCAATCTATCACCTACACGTGTATCCACACTTGCCTCAAACCCACTCCATGACTCAATTTTTTTTGGTAAGAGAGTTTTGATTTTTAAAATTCTACTACTGAGTCTTCTTCAATTGCAGTATCTTATTAGAATAATTGATTAAATAAACAAAACATTATAAATATATACTCTCTCCGTCCGGATTTAATTGTTGTAATAGTATATTCACGGAGTTTTATGCCATAAGTTATTGTAAGATTATATTATATAATCTAATAGGAAAATAGGTATGATGGGATATAGTGAATATTTTTTATATAGAATAAAGTATAAGATAGGGAGTTAGAGAGAGAGACATTTTTATATAGAACAATTTCTTTTTTCAATAAGCATCTTTTACAAAACCTTGATAAATACTACTTTGAATATTAAAGCAAAGATAAGTATTCGTTATACATATCCACGGTCAATATAAGACACATATTTTAAATAAAAATTGACAATATATACATACAGTTAGTCATTTTATTAAATTTTTATTATGATATGGGTATTAAATTTGTATTATGTAAGTATTATGTAAATATTTAGACAAATCCAACAAAATGATACGGATTACATGACTATGTTCATCATCTATATTAAAATTCACCAAATAACATTAAAATTACAGAGATGTGTGAATTTAGTAGTTAGTGTAAAAACAAAAGAGTTGCAAAATTTTAAAAATTGAGGAGTTACATAGTAGAGTAGTAGTTAGATAAGGTTACGCAAGTTTTTCTCGTGTTTAAGGAAGTTACAATACTCCTTACTTTCTTTTTTAAAGTAATAAAATATTACTTATAATTATCAAATTTAGTTGTTAAAATATTATATAGTATTATAGTAACCTTTTTTATACTATATTCATACTTCGTTGTTTTTCTAATTTATTTGTATTCTAATTATGTAAGTACAAATCGGTAGATTACATTAATTATTTTTTGTAAATATCCTACTACGTAATCTGTAAAATGGATTAATTTTTTTAATAAAAATATAAGCATATATTGTTATATTTGTTACCAAAATATAAAAACAGATTTTATATAGTATTCCTCATGTATAGAATGATATATTTTTTTTAGGAAAATAGAATCAAATCTTTATTGGGTAAAAAGGTAACAAAACAATTTACAACCAATTATTTTATTTTTTAATTTTTTTATATCTAAAAGAGAGGCCAATCAATGAGTGACATTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATAATATATAGATGTTATAATAAATACTAGTAGTCCAAGTACTTTTATATTGTTAATGTCGTACCTGTACATTAAGTACATAATATCTATAGTGTTATAAGGTTAAGGCCACGTATTTAAAAACTGAAAGGGTTTTTACTTATAACACTAAGGGCAAGTACTTTTATACTGTTAGTGTTGTTACCTATAGATAAAAATAAGTATTTTTAGTTTTTTTTTTTTTTTTGCAAGGTAAGATGAATAGTCCTACCGGGTCGGAATCCCGCACGGGTCAACCCGCCCGGGTTAGCAGGCTAGACACTTTGAGAGTGGGGGGAGTGATAAGGGGAACCCTCCCTCAAAGTGCCCCTAGTGGGGATTGAACCCCCAACCTTTTGGTTGAAAGGTGGAATCCTTTCCACTAGGCCAAGACACACTTGTTTTTTTTTCTAGTGTTATAATAGATACTGTTGCCTAGGTATATTTATAGTGTTGTAGTCGTTACTTATATAAATAATTGCAGGTACTTTTAAAGTGTTAGGAATTTTACCTACACTCTAAGAGATATGGGATGTTACTAATAAGAGTATTGCCTGGTACTTTATAGTGTTAGGTCTCTTACCTATAAATTTAAGAAAGATATTTTTCGTGTTGTAATTTATATTGTTAGGGTCGTTACTTCTAAAATAAATTCCAAGTACTTTTATAGTGTTAGGAATGTTACCTACACTCTAAGTATATCCACTATAGTGGTAATAAATACTATATTCCAATATTACGGAGGTTACTTATAAGAGTAATGACTGATACTTTATAGTGTTAGGGATGTTACCTATAAATTTAAGAAAGATATTTCTCGTGTAGTAATTTATATTGTTATTCGTTACTTCTAAAATACATTATAGGTCCTTTTATAGTGTTAGGGATGTTACCTACACTCTAAGTAGATCTACTATAGTAGTAATAAATACTATATCCCAATATCGGGGATATTACTTATAAGAGTAATGACCGGTACTTTATATTCTTAGGGCTGTTACCTATAAATTTAAGAGATATTTATCGTGTTGTAATTTATATTGTTAGGGTCGTTACTTCTAAAATAAATTCCTGGTACTTTTATAGTGTTAGGAATGTTATATGCACTCTAAGTAAATCTACTATAGTGGTAATAAATACTATATCCCAATATTAGGGATGTTAGTTATAAGAGTAATGCTTGGTACTTTATAGTGTTAGGGTCGTTACCTATAAATTTAAGAAAGATATTTCTCGTGTTGTAATTTATATGGTTAGAGTCGTTACATCTAAAATAAATTCCACGTACTTTTATAGTTTTAGGAATGTTACCTACACTCTAAGTAGATCTACTGTAGTGGTATCATGGATGTTACTTATAAGAGTAATGCCTGGTACTTTATAGTGTTAGGGTTGTTACCTATAAATTTTAAAAAGATATTTCTTATTTTGTAATTTATATTGTTACGATCGTTACTTGTAAAATAAATTCCAGGTACTTTTGTAGTGTTAGGAATATTACCTACACATAAAGATTAGCTAATTCTATAGTGTTATAACATAATTTATACCAGGTATGTTGTTAGTCGTATGATGTTACTTTTTCTAAAAACGCGAAAATATAATTGGAATACCTTTTTCACTGTTTTTAGTCAATGTTAGGTCTTCGTCTTGTTACTCCACATTTGTTAGGTCTTCAATTTGATCTTCCATAGTTGTTAAATCTTCCATTTCCTCTTCGATAATAGTGAAATCTTCAATCTTACTGGTTATAGTTCCATGTTCATCATAATTACAAAGCTGTAGATTATCCATTGAACTTTGAAGAGATTGTCCAAACTCCATTTTTAGCGATTCCGATTAGATTTGTAGCTTGAATTTGTGGAATTATAGCTTTTTTTTTTTTTATTTATTTTTTATATATATATATATAGAATTCTGGAGAAACTCAAAAACCTAGGTAATGAATTTATTGCGGCGCAAAAAGAGAGGCAGTCGAATTATTTAACGGCGTTAAGTTATGATTATCTTTTTTTCTTTTGGACGGGCTTCTCTGACGTTTGTTTCCCACATATATTTTTTTTCTTTTTCTTTTAGACCAGCCACACAGGAGATGCGTTGTTTAGAAAGAAGGGAGTAA

mRNA sequence

ATGCCTGAATTTAACCGAGGTTTGCGGCGGTGGAGGAACTGGATCGGAAAAAGGAGGGATTCTAGTTATAACATATCTAATGAATCCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCCAATATCTAGAGTTTCCCTTTGTATATTATATGGATGATCCGATCCCTAACGACCAGGATTGGGAATTTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGAATCTTCTGATCAATCTAGAGATCGTTCGAATTCTATTAGTAATGAGGATTCGAAATATCACACAAAAATCAATAAAACAGAGATTCGACAACTAAAAGAAAGATATATTCTTCGGGATCCATCATTTCTCCAAACGGAAGGAACAGAGATAGAATCAGACCGATTCCCGAAATACCTTTCTGGATATTCCTCAATGCCTCGGATATTCACGGCACGTGAGAAGAAGATGATTATTCATCAGCTTCCGGAAGTAATCGAACAACTTCTTGAGAATCCTACAAGATTTATTCGTTCTTTTATCTCTGGAAGATGGTCAGAACTTCATATGGGTTCAAATCCTACTCAGAGGATCATTACCTTTATAGAGAATTCTGGAGAAACTCAAAAACCTAGACCAGCCACACAGGAGATGCGTTGTTTAGAAAGAAGGGAGTAA

Coding sequence (CDS)

ATGCCTGAATTTAACCGAGGTTTGCGGCGGTGGAGGAACTGGATCGGAAAAAGGAGGGATTCTAGTTATAACATATCTAATGAATCCGTCGCTGGAATTGAGATCTCATTCAAAGAGAAAGATATCCAATATCTAGAGTTTCCCTTTGTATATTATATGGATGATCCGATCCCTAACGACCAGGATTGGGAATTTTTTGTTCAAGTAACGGATTCTAGCCAATTGAAAGAATCTTCTGATCAATCTAGAGATCGTTCGAATTCTATTAGTAATGAGGATTCGAAATATCACACAAAAATCAATAAAACAGAGATTCGACAACTAAAAGAAAGATATATTCTTCGGGATCCATCATTTCTCCAAACGGAAGGAACAGAGATAGAATCAGACCGATTCCCGAAATACCTTTCTGGATATTCCTCAATGCCTCGGATATTCACGGCACGTGAGAAGAAGATGATTATTCATCAGCTTCCGGAAGTAATCGAACAACTTCTTGAGAATCCTACAAGATTTATTCGTTCTTTTATCTCTGGAAGATGGTCAGAACTTCATATGGGTTCAAATCCTACTCAGAGGATCATTACCTTTATAGAGAATTCTGGAGAAACTCAAAAACCTAGACCAGCCACACAGGAGATGCGTTGTTTAGAAAGAAGGGAGTAA

Protein sequence

MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPNDQDWEFFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELHMGSNPTQRIITFIENSGETQKPRPATQEMRCLERRE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13550.1Spo13550.1mRNA


Homology
[Close]
BLAST of Spo13550.1 vs. NCBI nr
Match: gi|756877515|ref|YP_009117718.1| (hypothetical chloroplast RF21 (plastid) [Acorus gramineus])

HSP 1 Score: 236.1 bits (601), Expect = 5.800e-59
Identity = 133/209 (63.64%), Postives = 150/209 (71.77%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  ISN++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISNKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. NCBI nr
Match: gi|74381770|emb|CAI53855.1| (ycf2 [Acorus calamus])

HSP 1 Score: 233.8 bits (595), Expect = 2.900e-58
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 189 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 248

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 249 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 308

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 309 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 368

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 369 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 397
[Close]
BLAST of Spo13550.1 vs. NCBI nr
Match: gi|161622353|ref|YP_001586225.1| (hypothetical protein RF2 [Acorus americanus])

HSP 1 Score: 233.8 bits (595), Expect = 2.900e-58
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. NCBI nr
Match: gi|75755703|ref|YP_319807.1| (Ycf2 [Acorus calamus])

HSP 1 Score: 233.8 bits (595), Expect = 2.900e-58
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. NCBI nr
Match: gi|11497598|ref|NP_055004.1| (Ycf2 [Spinacia oleracea])

HSP 1 Score: 219.5 bits (558), Expect = 5.600e-54
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 1 

		  

Query: 66  FVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGT 125
           FVQVTDSSQLKESSDQSRDRSNSISN DS+YHT INK EI+QLKER ILRDPSFLQTEGT
Sbjct: 285 FVQVTDSSQLKESSDQSRDRSNSISNADSEYHTLINKREIQQLKERSILRDPSFLQTEGT 344

Query: 126 EIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELH 185
           EIESDRFPK LSGYSSMPR+FTAREK+MIIH LPE IEQLLENPTR IRSF SGRWSELH
Sbjct: 345 EIESDRFPKCLSGYSSMPRLFTAREKQMIIHLLPEEIEQLLENPTRSIRSFFSGRWSELH 404

Query: 186 MGSNPTQR 194
           +GSNPT+R
Sbjct: 405 LGSNPTER 412
[Close]
BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Match: A0A0B5EL20_ACOGR (Protein Ycf2 OS=Acorus gramineus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.100e-59
Identity = 133/209 (63.64%), Postives = 150/209 (71.77%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  ISN++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISNKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Match: A9QAQ5_ACOAM (Putative uncharacterized protein ycf2 (Fragment) OS=Acorus americanus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.000e-58
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Match: A0A023ZPW4_BETVU (Protein Ycf2 OS=Beta vulgaris subsp. vulgaris GN=ycf2 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.800e-52
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1 

		  

Query: 66  FVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGT 125
           FVQVTDSSQLKESSDQSRDR +SISN DS+YHT INK EI+QLKER ILRDPSFLQTEGT
Sbjct: 285 FVQVTDSSQLKESSDQSRDRLDSISNADSEYHTLINKREIQQLKERSILRDPSFLQTEGT 344

Query: 126 EIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELH 185
           EIESDRFPK LSGYSSMPR+FT REK+MIIH LPE IE+LLENPTR IRSF SGRWSELH
Sbjct: 345 EIESDRFPKCLSGYSSMPRLFTEREKRMIIHLLPEEIEELLENPTRSIRSFFSGRWSELH 404

Query: 186 MGSNPTQR 194
           +GSNPT+R
Sbjct: 405 LGSNPTER 412
[Close]
BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4U9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_014370 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.800e-52
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1 

		  

Query: 66  FVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGT 125
           FVQVTDSSQLKESSDQSRDR +SISN DS+YHT INK EI+QLKER ILRDPSFLQTEGT
Sbjct: 189 FVQVTDSSQLKESSDQSRDRLDSISNADSEYHTLINKREIQQLKERSILRDPSFLQTEGT 248

Query: 126 EIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELH 185
           EIESDRFPK LSGYSSMPR+FT REK+MIIH LPE IE+LLENPTR IRSF SGRWSELH
Sbjct: 249 EIESDRFPKCLSGYSSMPRLFTEREKRMIIHLLPEEIEELLENPTRSIRSFFSGRWSELH 308

Query: 186 MGSNPTQR 194
           +GSNPT+R
Sbjct: 309 LGSNPTER 316
[Close]
BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Match: V9PEB3_AGRGI (Protein Ycf2 OS=Agrostemma githago GN=ycf2 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.200e-50
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 1 

		  

Query: 58  PNDQDWEFFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDP 117
           PND     FVQVTDSSQLK SSDQSRDR +SISN DS+YHT INK EI+QLKER ILRDP
Sbjct: 152 PNDSTRSSFVQVTDSSQLKGSSDQSRDRLDSISNADSEYHTLINKREIQQLKERSILRDP 211

Query: 118 SFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFI 177
           SFLQTEGTEIESDRF K LSGYSSMP++FT REK+MIIH LPE IE+LLENPTR IRSF 
Sbjct: 212 SFLQTEGTEIESDRFSKCLSGYSSMPQLFTEREKQMIIHLLPEEIEELLENPTRSIRSFF 271

Query: 178 SGRWSELHMGSNPTQR 194
           SGRWSELH+GSNPT++
Sbjct: 272 SGRWSELHLGSNPTEK 287
[Close]
BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Match: YCF2_ACOCL (Protein Ycf2 OS=Acorus calamus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.800e-60
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Match: YCF2_ACOAM (Protein Ycf2 OS=Acorus americanus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.800e-60
Identity = 132/209 (63.16%), Postives = 149/209 (71.29%), Query Frame = 1 

		  

Query: 1   MPEFNRGLRRWRNWIGKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPND 60
           MPE NRG R WRN IGK+RDSS  IS ++VAGIEIS KEKD++YLEF F+ Y DDPI  D
Sbjct: 174 MPESNRGSRWWRNRIGKKRDSSCKISTKTVAGIEISSKEKDLKYLEFLFLSYTDDPIRKD 233

Query: 61  QDWE----------------FFVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTE 120
           + +                  FVQVTD SQ K SSDQSRD  +SIS EDS+YHT I++TE
Sbjct: 234 RFFSKVQNVSSNIQYDSTRSIFVQVTDFSQSKGSSDQSRDHFDSISKEDSEYHTLIDQTE 293

Query: 121 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 180
           I QLK R I  DPSFLQTE TEIESDRFPK LSG S M  +F   EK+MIIH+LPE I++
Sbjct: 294 IPQLKGRSIPGDPSFLQTERTEIESDRFPKCLSGSSPMSPLFPEHEKQMIIHRLPEEIDE 353

Query: 181 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELHMGSNPT R
Sbjct: 354 FLGNPTRSIRSFFSDRWSELHMGSNPTDR 382
[Close]
BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Match: YCF2_SPIOL (Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 3.500e-56
Identity = 113/128 (88.28%), Postives = 119/128 (92.97%), Query Frame = 1 

		  

Query: 66  FVQVTDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGT 125
           FVQVTDSSQLKESSDQSRDRSNSISN DS+YHT INK EI+QLKER ILRDPSFLQTEGT
Sbjct: 285 FVQVTDSSQLKESSDQSRDRSNSISNADSEYHTLINKREIQQLKERSILRDPSFLQTEGT 344

Query: 126 EIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELH 185
           EIESDRFPK LSGYSSMPR+FTAREK+MIIH LPE IEQLLENPTR IRSF SGRWSELH
Sbjct: 345 EIESDRFPKCLSGYSSMPRLFTAREKQMIIHLLPEEIEQLLENPTRSIRSFFSGRWSELH 404

Query: 186 MGSNPTQR 194
           +GSNPT+R
Sbjct: 405 LGSNPTER 412
[Close]
BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Match: YCF2_COFAR (Protein Ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.000e-47
Identity = 108/178 (60.67%), Postives = 127/178 (71.35%), Query Frame = 1 

		  

Query: 16  GKRRDSSYNISNESVAGIEISFKEKDIQYLEFPFVYYMDDPIPNDQDWEFFVQVTDSSQL 75
           GK  D   N+S E++  ++  +     ++  F  V  +   I  D     FVQVTDSSQL
Sbjct: 333 GKESDFLRNVSRENLIWLDNVWLVNKDRF--FSKVRNVSSNIQYDSTRSSFVQVTDSSQL 392

Query: 76  KESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGTEIESDRFPKY 135
           K SSDQSRD  +SISNEDS+YHT IN+ EI+QLKER IL DPSFLQTE TEIESDRFPK 
Sbjct: 393 KGSSDQSRDHLDSISNEDSEYHTLINQREIQQLKERSILLDPSFLQTERTEIESDRFPKC 452

Query: 136 LSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELHMGSNPTQR 194
           LSGYSSM R+FT REK+MI H LPE IE+ L NPTR +RSF S RWSELH+G NPT+R
Sbjct: 453 LSGYSSMSRLFTEREKQMINHLLPEEIEEFLGNPTRSVRSFFSDRWSELHLGLNPTER 508
[Close]
BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Match: YCF2_NANDO (Protein Ycf2 OS=Nandina domestica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.100e-46
Identity = 109/184 (59.24%), Postives = 129/184 (70.11%), Query Frame = 1 

		  

Query: 13  NWIGKRRDSSY--NISNESVAGIE-ISFKEKDIQYLEFPFVYYMDDPIPNDQDWEFFVQV 72
           +W     +S +  N+S E+   ++ +    KD  +  F  V  +   +  D     FVQV
Sbjct: 336 SWEKNPHESDFFRNVSRENWIWLDNVWLVNKDRFFSFFSKVRNVSSNMQYDSTRSIFVQV 395

Query: 73  TDSSQLKESSDQSRDRSNSISNEDSKYHTKINKTEIRQLKERYILRDPSFLQTEGTEIES 132
           TDSSQLK SSDQSRD  +SISNEDS+YHT IN+ EI+QLKER IL DPSFLQTE TEIES
Sbjct: 396 TDSSQLKGSSDQSRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIES 455

Query: 133 DRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQLLENPTRFIRSFISGRWSELHMGSN 192
           DRFPK LSGYSSM R+FT REK+M  H LPE IE+ L NPTR IRSF S RWSELH+GSN
Sbjct: 456 DRFPKCLSGYSSMSRLFTEREKQMKNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSN 515

Query: 193 PTQR 194
           PT+R
Sbjct: 516 PTER 519
[Close]
BLAST of Spo13550.1 vs. TAIR (Arabidopsis)
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 177.6 bits (449), Expect = 8.700e-45
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = 1 

		  

Query: 47  FPFVYYMDDPIPNDQDWEFFVQVTDSSQLKESSDQSRDRSNSISNEDSKYH--TKINKTE 106
           F  V  +   I  D     FVQVTDSSQL  SSDQ  D  +SISNEDS+YH  T IN+ E
Sbjct: 365 FSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEDSEYHYHTLINQRE 424

Query: 107 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 166
           I+QLKER IL DPSF+QTEG EIESDRFPKYLSGYSSMPR+FT REK+M  H LPE  E+
Sbjct: 425 IQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEESEE 484

Query: 167 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELH+GSNPT+R
Sbjct: 485 FLGNPTRAIRSFFSDRWSELHLGSNPTER 513
[Close]
BLAST of Spo13550.1 vs. TAIR (Arabidopsis)
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 177.6 bits (449), Expect = 8.700e-45
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = 1 

		  

Query: 47  FPFVYYMDDPIPNDQDWEFFVQVTDSSQLKESSDQSRDRSNSISNEDSKYH--TKINKTE 106
           F  V  +   I  D     FVQVTDSSQL  SSDQ  D  +SISNEDS+YH  T IN+ E
Sbjct: 365 FSKVRNVSSNIQYDSTRSSFVQVTDSSQLNGSSDQFIDPFDSISNEDSEYHYHTLINQRE 424

Query: 107 IRQLKERYILRDPSFLQTEGTEIESDRFPKYLSGYSSMPRIFTAREKKMIIHQLPEVIEQ 166
           I+QLKER IL DPSF+QTEG EIESDRFPKYLSGYSSMPR+FT REK+M  H LPE  E+
Sbjct: 425 IQQLKERSILLDPSFIQTEGREIESDRFPKYLSGYSSMPRLFTEREKRMNNHLLPEESEE 484

Query: 167 LLENPTRFIRSFISGRWSELHMGSNPTQR 194
            L NPTR IRSF S RWSELH+GSNPT+R
Sbjct: 485 FLGNPTRAIRSFFSDRWSELHLGSNPTER 513
The following BLAST results are available for this feature:
BLAST of Spo13550.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|756877515|ref|YP_009117718.1|5.8e-5963.6hypothetical chloroplast RF21 ... [more]
gi|74381770|emb|CAI53855.1|2.9e-5863.1ycf2 [Acorus calamus][more]
gi|161622353|ref|YP_001586225.1|2.9e-5863.1hypothetical protein RF2 [Acor... [more]
gi|75755703|ref|YP_319807.1|2.9e-5863.1Ycf2 [Acorus calamus][more]
gi|11497598|ref|NP_055004.1|5.6e-5488.2Ycf2 [Spinacia oleracea][more]
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BLAST of Spo13550.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0B5EL20_ACOGR4.1e-5963.6Protein Ycf2 OS=Acorus gramine... [more]
A9QAQ5_ACOAM2.0e-5863.1Putative uncharacterized prote... [more]
A0A023ZPW4_BETVU4.8e-5285.1Protein Ycf2 OS=Beta vulgaris ... [more]
A0A0J8B4U9_BETVU4.8e-5285.1Uncharacterized protein OS=Bet... [more]
V9PEB3_AGRGI1.2e-5079.4Protein Ycf2 OS=Agrostemma git... [more]
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BLAST of Spo13550.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YCF2_ACOCL1.8e-6063.1Protein Ycf2 OS=Acorus calamus... [more]
YCF2_ACOAM1.8e-6063.1Protein Ycf2 OS=Acorus america... [more]
YCF2_SPIOL3.5e-5688.2Protein Ycf2 OS=Spinacia olera... [more]
YCF2_COFAR3.0e-4760.6Protein Ycf2 OS=Coffea arabica... [more]
YCF2_NANDO1.1e-4659.2Protein Ycf2 OS=Nandina domest... [more]
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BLAST of Spo13550.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00860.18.7e-4567.1Chloroplast Ycf2;ATPase, AAA t... [more]
ATCG01280.18.7e-4567.1Chloroplast Ycf2;ATPase, AAA t... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 1..66
score: 2.4E-29coord: 66..194
score: 5.1
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 1..193
score: 2.1
NoneNo IPR availablePANTHERPTHR33078:SF4SUBFAMILY NOT NAMEDcoord: 1..193
score: 2.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009902 chloroplast relocation
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0030154 cell differentiation
biological_process GO:1901918 negative regulation of exoribonuclease activity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0042793 plastid transcription
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006417 regulation of translation
biological_process GO:0006396 RNA processing
biological_process GO:0010043 response to zinc ion
biological_process GO:0009744 response to sucrose
biological_process GO:0046680 response to DDT
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009646 response to absence of light
biological_process GO:0006013 mannose metabolic process
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0016887 ATPase activity
RNA-Seq Expression