Spo00851 (gene)

Overview
NameSpo00851
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTranscription and mRNA export factor SUS1
Locationchr3 : 43984803 .. 43988259 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGACAGGCCTAAAGGAATCTTCCTCCAGGGCTGTGCAAAGCTTTCTAATGCAAATCCTCACCTAAATTTGGAGAGAAAAAAGGTAATAATGCTGAAAATGTTAGGGAACATTATGTGCTTAAAACAGCCACTTAAAAAGATAAACAAGTCATTAGAGCATTAGAATCTTCATTTTACCTGTGCAGGAAACCTTGATTCACCTTTGCATTTCTTATCCTCCCATGCAGTTGGATCTATATTTGAACCCCCAAAAGTAGATGCCTGACAAGTCCAACGTACGGTCAAATAGATGAGATAACATGATCAAACAAGCATAAGACCTGGAATTCCAGTGATTAGACCTGGAATAACTATTGTGCTGAATCCTAAGCACAAAAATAAGTAGTGACACGGTAAAAATGCAACAATTTTCAAGACCTTTGCTCAAATCTAATTTTTTTGGTATAACGATTTGTTTCTGTTCTATGTTTAGAGTTCATACGCAACAAGGAATTTCTTTCACCCCTTGTAAATTTTTCCTCTCAACAAAGGCAATTAATAGCAGGACTTGCCTAGGAGGCTAGAAATTTAAGATCTAAGGTTTTGCACAATTAACCATATCAAAATCAAAGATAGTGTCCCTTTAAATTTATCAAACTAACTAAAACAATGGAAAATACATAGCCGCTTCAATTCCAATATCTAGTGGTTCATACAGATCAAGAACAAGAAAGATAATAGAGTAAGGCTTCAAAACAAACCTCAAATATGCCATGAAGCTGGTGAGTTGTATAGTTGTAAAGGAATAAAGGTAAACCGGGAGTTATTGCTCGAACAGAGTCCCTGTACCTTGGGGGTAAACCTGAACGGAGGAACTACAATCAGCAATTATTTCATCACTGTAAACTGAAACCAACAGGGCAACAGGTCGCGATGAAATTTTGGTGTAAGAAGATATTGCAGGATTATTTTAGAACATACTTAACTATTACATAGTAAAAAATGAATACCGAATAGCCTGAAAATAGTGAACAATGATCAAAGCATGAGCTAAAAAGAAACCACGCATACCAAATAGCTGTCGCTTGAGATTCTCCTGCATGGTGTCATTGTTACACACAAAGATGTATCCACCAAGCACCTCATTCCTAGGAAGTGTCTCTGCGGCAGGTAAGGTCTTGAACCTTTTATCGTTTGCACTTTCATTGCTGTTGTTGTTGATGAGCTCCTTGTTGATGTGGTGGTTGAAGCTAGACTTGTTAATGGGCATGTTCTCAACAATGTTAGTGTTGCTCTTCTGATAGACAGCATTCATATTGTAAACATTGTTCCTGAAAGAGCTTTTGCTCAAATTTTCAGGCCCCTTAGATTCCAGGCTCAACATGTTAAAGTTGAGGCTTTCAAATTTGTTATCTTCTTGGAACCCAAATCTATCCCTTGGCCTTATATCAGCAGCTCCTTTAGAATAGTCAATATTATTCATGCGCTCCCCCTTTGATCTAGTCTTCTCAGCTAACTTTGACGCTGCCATCAGCCATTTGTGATCTTCTGACACTCTTGACTGTCCACGAAGTTCATCACCCAGTTGCCAAAAGCTGTTCATACCGTCCATCCTGCAGCCCTGATGATACAATTAAGAGCTTAGTGTTATGATGGTTTGATATGTTATTCCATCGAATAAGATGGTGATACAGATATGTACTATATTTAGAAATCTAGTAACATTACTCTTTATGTCAGAGTAATATACTTAGGCATTGGCTTATTTTTGTTGTCGCCTGAGGGGCACGGCCCCCTATCGGAAAATTTTGTAGTGTAATTGTAGTTACGCCCCCCCCCNAAATCAAACGCTCTAATAATTAAAAAATAAATCTAAAATAAAATTCATCAAAAATCAAACACTAATCTAAAATAAAATTCAATCTAAAATCAAACATTAATCCAATATTAGATCGCCACGTAGGAAATCTAATGGTTTCGACCAATGAAAATAAGACTTCAAAATTACTTTTGAATTAAAAAGTCGAATGCCACGTAGATATTTTTATTAATTAATTATTAATATTTCTTATATACAATTTCATCCAAAATCAAACACTATAATAATTAAAAAATAAATCTAAAATGAAATTTAATCCAAAATAAAAAAACCAATCTAATCTAATATTTAAAATATAGCAGTTGATATATATAGGAGTTTTATTTTAACATAACAATTTAATAGAAATCGTGAATCGCTCGGGATAAAATGTAGTTTATAACTAAAATAAATTTTGATAAGTTCTAATAACTTCAGAACGCAGCCTAATCGGAAACACAAATTCTTATTTACAAAGGGTGTACAATAAATATTGTACACCGGAGTAAAAGTTAACTCAAAATGTTTAAAATTTAAGTTTATATATGTAAAAGTTATCTATTTTTTAGTAATAAATTTTTTCATTTCAGTAAAAACATATTTCTTCGAAACCACTAATAATGTATAAAATTAATCATTTAATCATTTCTATCAATTTTTTTACTAATATAAAAATTAATCAAAACTAAGTTAAAGTTACAATAAAAAAATGGGTAAAAGTTATGTTGGTGTACAAGACCTTTTGAATCTGAAATATCAGCCCTAACAAAAACGCATAGCGTAACCAGTTCTGAGAAAACCTGGTTTTCTTTATCATCTCTATCTACAATCTTCAAATTTAGTCATCTTCCTTTCCAATTTGTCGGAAACATCCGGACTTACAACGTAATTGTTGGAGCTTGCTAAAACAACATAATTATCAATGTAATCCTTTAAAATTTATGCCCTTTCTGTTTAGTATTTCACTCAAATAATCCCTTTTTTCTGTCGTTTGGGGTTTTTTAATACAATTTTTGCTTTTTTGGTGTAAAAAATTTAGGAGGCATTCAGTGAATCGTCCACCAACACCAGATGCAGGTGATGAGCAAGAAAAGGAACTTACCCTTCAAGAGAAAATCAATATTAAGGTCTGTTTCTTCAACCCCGTTAATTTGTTCTTTTAAAAAGAAGAAAAATAACTTGCTTCTTGCTGTTAATTTGCTGGGCAGATCCTTTGATTTGGGTTTTTTAAATAATTTTTTGGACACTCAAAAGTTATGGATTGAATTGCGTGGTTTAAGATGGGTATTTGGTTAATTGACTTTACAGTTGATGGAAAGTGGAGAAAAGGAGAGATTGATGGATCTTTTGAGAGAAAGGCTGATTGAATGTGGATGGAAGGATGAAATGAAAGCTGTTTGCAGNTTCAACCCCGTTAATTTGTTCTTTTAAAAAGAAGAAAAATAACTTGCTTCTTGCTGTTAATTTGCTGGGCAGATCCTTTAATTTGGGTTTTTTAAATAATTTTTTGGACACTCAAAAGTTATGGATTTTGATTTTGTGGATTGAATTGCGTGGTTTAAGATGGGTATTTGGTTAATTGACTTTACAGTTGATGGAAAGTGGAGAANATTAG

mRNA sequence

ATGCAGGACAGGCCTAAAGGAATCTTCCTCCAGGGCTGTGCAAAGCTTTCTAATGCAAATCCTCACCTAAATTTGGAGAGAAAAAAGATCAAGAACAAGAAAGATAATAGAGTAAGGCTTCAAAACAAACCTCAAATATGCCATGAAGCTGGTGAGTTGAGGCATTCAGTGAATCGTCCACCAACACCAGATGCAGGTGATGAGCAAGAAAAGGAACTTACCCTTCAAGAGAAAATCAATATTAAGTTGATGGAAAGTGGAGAANATTAG

Coding sequence (CDS)

ATGCAGGACAGGCCTAAAGGAATCTTCCTCCAGGGCTGTGCAAAGCTTTCTAATGCAAATCCTCACCTAAATTTGGAGAGAAAAAAGATCAAGAACAAGAAAGATAATAGAGTAAGGCTTCAAAACAAACCTCAAATATGCCATGAAGCTGGTGAGTTGAGGCATTCAGTGAATCGTCCACCAACACCAGATGCAGGTGATGAGCAAGAAAAGGAACTTACCCTTCAAGAGAAAATCAATATTAAGTTGATGGAAAGTGGAGAANATTAG

Protein sequence

MQDRPKGIFLQGCAKLSNANPHLNLERKKIKNKKDNRVRLQNKPQICHEAGELRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGEX
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00851.1Spo00851.1mRNA


Homology
[Close]
BLAST of Spo00851.1 vs. NCBI nr
Match: gi|731338070|ref|XP_010680130.1| (PREDICTED: transcription and mRNA export factor SUS1 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-9
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          +RHSVNRPPTPDAGDEQEKELT+QEKINIKL+ESGE
Sbjct: 1  MRHSVNRPPTPDAGDEQEKELTVQEKINIKLIESGE 36
[Close]
BLAST of Spo00851.1 vs. NCBI nr
Match: gi|731338068|ref|XP_010680129.1| (PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 69.7 bits (169), Expect = 2.900e-9
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 

		  

Query: 54 RHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          RHSVNRPPTPDAGDEQEKELT+QEKINIKL+ESGE
Sbjct: 3  RHSVNRPPTPDAGDEQEKELTVQEKINIKLIESGE 37
[Close]
BLAST of Spo00851.1 vs. NCBI nr
Match: gi|629089580|gb|KCW55833.1| (hypothetical protein EUGRSUZ_I01648 [Eucalyptus grandis])

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-6
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          +RHSVNRPPTPDA +++EKE TLQE INIKL+ESGE
Sbjct: 1  MRHSVNRPPTPDAAEDEEKEPTLQEIINIKLIESGE 36
[Close]
BLAST of Spo00851.1 vs. NCBI nr
Match: gi|460375006|ref|XP_004233299.1| (PREDICTED: transcription and mRNA export factor SUS1 [Solanum lycopersicum])

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-6
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          +RHSVNRPPTPD  DEQEKE TL+E INIKL+ESGE
Sbjct: 1  MRHSVNRPPTPDTRDEQEKEPTLKEIINIKLIESGE 36
[Close]
BLAST of Spo00851.1 vs. NCBI nr
Match: gi|702464792|ref|XP_010029002.1| (PREDICTED: uncharacterized protein LOC104419141 [Eucalyptus grandis])

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-6
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 

		  

Query: 52  ELRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
           ++RHSVNRPPTPDA +++EKE TLQE INIKL+ESGE
Sbjct: 129 KMRHSVNRPPTPDAAEDEEKEPTLQEIINIKLIESGE 165
[Close]
BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Match: A0A059APR6_EUCGR (Transcription and mRNA export factor SUS1 OS=Eucalyptus grandis GN=SUS1 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-6
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          +RHSVNRPPTPDA +++EKE TLQE INIKL+ESGE
Sbjct: 1  MRHSVNRPPTPDAAEDEEKEPTLQEIINIKLIESGE 36
[Close]
BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Match: A0A061EKI3_THECC (Enhancer of yellow 2, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_017190 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.600e-6
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          ++HSVNRPPTPDA D+Q KE TLQE INIKL+ESGE
Sbjct: 23 MKHSVNRPPTPDAADDQGKEPTLQEIINIKLIESGE 58
[Close]
BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Match: A0A061EDU7_THECC (Transcription and mRNA export factor SUS1 OS=Theobroma cacao GN=SUS1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.600e-6
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          ++HSVNRPPTPDA D+Q KE TLQE INIKL+ESGE
Sbjct: 1  MKHSVNRPPTPDAADDQGKEPTLQEIINIKLIESGE 36
[Close]
BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Match: M0TLI2_MUSAM (Transcription and mRNA export factor SUS1 OS=Musa acuminata subsp. malaccensis GN=SUS1 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.700e-6
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 

		  

Query: 46 ICHEAGELRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          I H A  +R S+NRPPTPD  +E EKELTLQE INIKL+ESGE
Sbjct: 53 IAHRA--MRASINRPPTPDPDEEPEKELTLQEMINIKLIESGE 93
[Close]
BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HEQ7_SOLCH (Transcription and mRNA export factor SUS1 OS=Solanum chacoense GN=SUS1 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.100e-6
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 

		  

Query: 53 LRHSVNRPPTPDAGDEQEKELTLQEKINIKLMESGE 89
          +RHSVNRPPTPD  DEQE E TL+E INIKL+ESGE
Sbjct: 1  MRHSVNRPPTPDTRDEQENEPTLKEIINIKLIESGE 36
The following BLAST results are available for this feature:
BLAST of Spo00851.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731338070|ref|XP_010680130.1|1.3e-991.6PREDICTED: transcription and m... [more]
gi|731338068|ref|XP_010680129.1|2.9e-994.2PREDICTED: transcription and m... [more]
gi|629089580|gb|KCW55833.1|2.3e-677.7hypothetical protein EUGRSUZ_I... [more]
gi|460375006|ref|XP_004233299.1|2.3e-680.5PREDICTED: transcription and m... [more]
gi|702464792|ref|XP_010029002.1|2.3e-675.6PREDICTED: uncharacterized pro... [more]
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BLAST of Spo00851.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A059APR6_EUCGR1.6e-677.7Transcription and mRNA export ... [more]
A0A061EKI3_THECC3.6e-677.7Enhancer of yellow 2, putative... [more]
A0A061EDU7_THECC3.6e-677.7Transcription and mRNA export ... [more]
M0TLI2_MUSAM4.7e-669.7Transcription and mRNA export ... [more]
A0A0V0HEQ7_SOLCH6.1e-677.7Transcription and mRNA export ... [more]
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BLAST of Spo00851.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00851.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 23..43
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016578 histone deubiquitination
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0015031 protein transport
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
cellular_component GO:0071819 DUBm complex
cellular_component GO:0005643 nuclear pore
cellular_component GO:0000124 SAGA complex
cellular_component GO:0070390 transcription export complex 2
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003713 transcription coactivator activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo134770.69Barchart | Table
Spo084970.67Barchart | Table
Spo243070.67Barchart | Table
Spo108200.66Barchart | Table
Spo140510.66Barchart | Table