Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPSSDSSGNINRKFLR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12939.1 vs. NCBI nr
Match: gi|902190450|gb|KNA11615.1| (hypothetical protein SOVF_133500 [Spinacia oleracea]) HSP 1 Score: 308.1 bits (788), Expect = 7.900e-81 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Spo12939.1 vs. NCBI nr
Match: gi|731363485|ref|XP_010693458.1| (PREDICTED: uncharacterized protein LOC104906416 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 195.7 bits (496), Expect = 5.700e-47 Identity = 104/150 (69.33%), Postives = 112/150 (74.67%), Query Frame = 1
BLAST of Spo12939.1 vs. NCBI nr
Match: gi|870846453|gb|KMS99014.1| (hypothetical protein BVRB_3g066210 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 166.4 bits (420), Expect = 3.700e-38 Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 1
BLAST of Spo12939.1 vs. NCBI nr
Match: gi|702488375|ref|XP_010035084.1| (PREDICTED: uncharacterized protein LOC104424381 [Eucalyptus grandis]) HSP 1 Score: 139.8 bits (351), Expect = 3.700e-30 Identity = 74/132 (56.06%), Postives = 89/132 (67.42%), Query Frame = 1
BLAST of Spo12939.1 vs. NCBI nr
Match: gi|848904848|ref|XP_012851994.1| (PREDICTED: uncharacterized protein LOC105971675 [Erythranthe guttata]) HSP 1 Score: 137.5 bits (345), Expect = 1.900e-29 Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133500 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 5.500e-81 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCF5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066210 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 2.600e-38 Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 1
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A058ZZ69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00211 PE=4 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 2.600e-30 Identity = 74/132 (56.06%), Postives = 89/132 (67.42%), Query Frame = 1
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A022QBQ5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024197mg PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.300e-29 Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: B9IC84_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07390g PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 2.200e-29 Identity = 69/114 (60.53%), Postives = 80/114 (70.18%), Query Frame = 1
BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 112.1 bits (279), Expect = 2.900e-25 Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1
BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 105.1 bits (261), Expect = 3.600e-23 Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 101.7 bits (252), Expect = 4.000e-22 Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12939.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12939.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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