Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAACAGCCGATGCAACTGCAAGTGGAGCTGAAGTCGGTCCCACCTCCAATTTTAATGCACTTGACCTTGGGTCACATACTCACATATGCGACCCAGGTCAAGTTAATTAAATTTTGACCCTTGTACACTGTCAACATTATAGTCATTTTGTCCTGTCAATTATCACTTGACCCAAGCTACATGTCAAGGTTGCATGTGCTCTTAGTGGCACCAGTCTGATTCTTGCAAGCAAGAGGTTATGGAGAAGAGGCGAGGGTTGTTGGTAAAGATAGTTTTGGCGGGCCGGACCGACACGAGAAAAATCTAGCCCGGTACAGGCACAAGTATGAAGTCGTGGATCAGACCTGAGTTGTATTTTTTTTTGGGAAAGCACGACCCTACATGACAAAAATACGCTAAATTTAGTGAACTTAGACTTAAGCATGACCGTTCGACCTAGCCCAATGCGATGCCAGTGGCCTCTATTTTTTTCCCTATCTGGCACGACCCGACCCAATAAAAACGGGCTTGGTGTGAGCGGAGTCCGTTCCGTCCATGACCCGTGAGCTCGACATGAGGCCCAGCCCAATCCAGCCCATACCATCTTTAGTTGTTGCGATATTGCTTTTGGCGTCTTGTTGATCTATTTCTTGTATTAACGGTTATGAATGTCAGAATGTGTAAATGGGGATAGTAGAAGAATTTCTTGATTTCTTTAACTATCTTAATAGTGAACTTAAATTACCAAAAAACAAATTACAGTTACACCTCAAATTACCTTTCATTAGTTTATCATCTTCATACTATTTCAAACATTATGTACTTAAGTTTGTGTCCTATTTACCGTAAAAAGAACAAGTTTAAGAGAAAACTAGTTAGTGTCCCGAACGATATCCCAGAGTATTGCATATAATTTGATTTTTTTTATTCATTTCAAATTTACTTATAAATTTCTTTATATATGCAATTTGAGAATAATATGAATTTCATGCGGTTTAAGAATAAAATTGGTTAACCAACAATCAAGTTAATAAGTTGTACTCCGTAATCAGGTCCTATAAGTTCATTATCTTGCAATCAGGTCTTACCAAGTCCAATAAATTCCAATCAAGATCTACTAGGTTCATACTACAGTATACACCATATAAGTTCAGTTATCCATGTTCCATTACCAAATGCACCTTAAATAGCGATGTTATAATCACTACATGCATTAACATTTTACGTTAGGAAGAACATATGTCTTGGAAAGACGACATTAGAAGTATTCTCTTAGCACAAATTTCCGATTTTAGGAACGCCCGAAAAGAAAAACAGGAAACGTTTCTTTGTAAGCAGTTTCCATTAAAACATTTGTAACGGTAAAACCAATCACAGCATTCGTCGATTTTCCCACCAATCTACCATCCTTCTGTAAACTTCACTTCCATTTTCCATACACCTCTTTCTCTCTCCTCAATCATCACAAATCCACCACCATGGATCACCAACCTACCACCCCTACCCCCACCGCCGACGAATCCAAACCCGTTAACCCGACTCCGAACCCAGATCAAACCTCCAAACCATCACCCGAACTCCACTCAGCGGAGTACGCACCATACCCAAAGCTAGACCCAAACGACGTCGTTCCACCGCCGGACCCCCTTCTCGCTCCTCCTCCACCTCCCAGCGCCACCAACATGCCTTCTGAGTCCAACCCTTACGTGTCAGCCGCTCCTGCTCCCAAAAGTATGAACAATTCCGTATAATTTTTCGATTTGAATTAGGGTTTTCAGTTTCTGCAAATTAGGGTTTAATTTGATTTGAATTTGATTTTGGTGGACAGAAACGATTGATTCGATGAAGGATGTGCTGGAGAAATGGGGAAAGAAGGCTTCTGAAGCTTCTAGTAAGGCGCAGGATCTTGCTGGCAATATGTGGCAACATTGTAATTCCTTTTTCTCTCTCCCTTTTCTTTTTTTGTTTTGTTGATTTTTATGATCCTTTGGTTGCTCTGCATTTTCGATTAGATGATATCAAAATCGCTTCATCGGTATATGATCTTTGTAGTTTTAATTGGCTGGGACTCTGGAAATTATTCTTTAGTGATCCGTAGTTCAAATTACACTGAATTACTCATACAAACTGAGCTATTTGGTTACTTTGGATCATACCAATAATTTGAGCATTCTTCATACTCCTTATGTACATTTTTAATTTGACTTTTATGCGATTTGATGAAACTAGTGAATAAACAATGAGCATAAGGTTTAGTAGTGAATTAATTGCGTAATTCAAATTGTAAATATCCCACATCAAAAAGAGGACAATCATGCTAAAAACTCGAGCTGCATATTGCAGTTGGGTTTTGAGTTTTTTATGACAAGGACAATGTATAAGACAAACTGACAAAGTCCTTCTTACTAATTGCATATAACCCGAATATATTATTTGGTTTTATTTTTATTGTTTCTTAAATTCTGTAGAATGCCCGTCACTAGTGCTTTTCGTTTTTTGAGCTAGGAACATAATACATATTGCCTACTTAAATGATGGTGATTAACTGCAAAAAAAAGTATGAGGGGAGAAGGAGAAGAAAGTGTGATTTAGAAGCTAACATAAATGGATAGCACTTTACTAGTGTAATTGTGTGTGCTTTAAAGAAACCCTTTCTTCATATTGGGAGTGCAACAAAAGGGCTTTGCAATCCCAGAAAGCGTTGAAGAAATGAGAAAAAGCTACTGTATATAATTACCAGTTGACTTCTAAGGTTATCATTAAGGTTATGATTACCAGATGACCTCTAAGGTTGGACCCTCTTTTAAGTATTCCTGAGAGAAATCTATCGCCTTTTGGGTGTTAATGAGGCTTCGCTGCATTGTAAATGGCCTACTATGCTTTCTCATCATTCCGTTTTGACCGAGTTGCAAACTTGTGATGTTCTTCCCTGTGAATTTGACTTTATTTGGATTTAGCCCATGTTATTCGGGCTCTTCTATTTCCCATGAGTACTCACATCCAAGACTTTAAGGTTTTAATATGGGTGTGGTTGTGTGGACAGTACTTGTACTGAACACTTCAACATTACCACTTAGGCCGATAAAACACAATTTATAGATAATGGTCAAGCACCCAAGCCTGTCACTTGGTCACCTCAATTTGTGTAATGCACAAATAATTAACTAAACAACGTCAAAAGATTATTTAGATTAATTCAAGGTACCTAGCAAGATCCAATTGCCCATAATTATCTTATTAGGCGTGATTAAAACCAGTTATGTGAACAATTTATAGAGGTGATGAAAGCGATAAACAATATTATGCACATTACAATATGGATTCTAGGTAAACTGGATATCTTTTGTCGTGCTTGTGCTTATGGAGAAGTGTTACTAACTTTATTGGCATGTCTCTGAATCAGTGAAAACAAGCCCCAATGTTGCTGATGCTGCAGTTGCAAGAATCGCTCAGCAAACAAAAGTTATCGCTGAAGGTGGTTATGAGAAAGTATTCAAGCAAACCTTTGAGGTTCTTCCAGAAGAGCAACTTAAGAAGTGGTTTGCTTGCTACCTCTCAACATCAGCAGGTCCAGTCATGGGAACTTTATACCTGTCAACAGCAAAGCTTGCATTCTGTAGTGACAGTCCTCTTTCATACACAAACGGTGACAAGACTGAATGGAGCTATTACAAGGTTTGTGTCTTTTCCTTGTAGCTTGCATTGTTATCAGCCTCCTATTCACTCATTGACCACCCCTTCTTGTTTTTTTAGTGTTTAGATTAAGGTTTTGGTCTTTTGAGTGAAAAATCCATGTCAAAGAACTTAATAATATGGCAGGGGTTTTTTGTGGGAACGGTATGCTGCTCCTTTAAATTGTGTTTTGATTGATCTTACTTTTAGTTTTTGCAAGAGATGATTGAGTTTATAGTTTCTGTATTTTCATCCATGACCATAGTCAGTATAGCTGCCCTTTAAAACTCGATGTAATTGTTATTATGAACGGCATTATTTACAGTGGAGTAATAAGGTTGTATGGAAACGAACTTTTTGTAATGGCAACACAACGCTAACAGATTCTTTGTTTTACAATTTCACGGGTAGGCTGCACTAATCATAGGTATTTTCTGTAAGAAAGTGCTATAGTATGGGGCGTTAAGGTCTACGGAATGTCCTATGTTGTTGTGTAATAAACACAAATGTTAATGATAACTGTTATTAGAATTTACCAAACCCATTTAATTTGTTAGGAAAACTTCCAACAAAATTCTTTCACATTTGTCTACTTCATACCATTCTTTTAGTCAGTATCTATTCTGCTGCCGGTGTTCTTGGTTTACCTCAACTTGCATTTTATGTCATGGTCTCTCTATTTTATGGTTGTGTTAATTGTAATTTGTCATACTACTTGCACTAGGTGGTTATTCAGTTGGATCAGTTGAAAGCAGTTAATCCCTCAACTAGCAAAGTAAACTCGGCTGAGAAATACATCCAGATAATTTCAGTTGACAACCACGAGTTTTGGTTCATGGGGTTTGTATACTATGATAATGCCGTGAAGTATCTACAAGGTGTATTACAGGGACAAAGCTCATAGTTGATGTTGAAACAGATGAATGTTCACAGAAAACCATTGTTGTTGTAGATAAACGCTTTTGCCAAATTATATTCTGAAGACCAAAAAAATATCTATTTTGTACAATATTGTGGTGATGTTATTTCCCTATTTATTGGTTCTTAG ATGCAAACAGCCGATGCAACTGCAAGTGGAGCTGAAGTCGGTCCCACCTCCAATTTTAATGCACTTGACCTTGGGTCACATACTCACATATGCGACCCAGTTTCCATTAAAACATTTGTAACGGTAAAACCAATCACAGCATTCGTCGATTTTCCCACCAATCTACCATCCTTCTGTAAACTTCACTTCCATTTTCCATACACCTCTTTCTCTCTCCTCAATCATCACAAATCCACCACCATGGATCACCAACCTACCACCCCTACCCCCACCGCCGACGAATCCAAACCCGTTAACCCGACTCCGAACCCAGATCAAACCTCCAAACCATCACCCGAACTCCACTCAGCGGAGTACGCACCATACCCAAAGCTAGACCCAAACGACGTCGTTCCACCGCCGGACCCCCTTCTCGCTCCTCCTCCACCTCCCAGCGCCACCAACATGCCTTCTGAGTCCAACCCTTACGTGTCAGCCGCTCCTGCTCCCAAAAAAACGATTGATTCGATGAAGGATGTGCTGGAGAAATGGGGAAAGAAGGCTTCTGAAGCTTCTAGTAAGGCGCAGGATCTTGCTGGCAATATGTGGCAACATTTGAAAACAAGCCCCAATGTTGCTGATGCTGCAGTTGCAAGAATCGCTCAGCAAACAAAAGTTATCGCTGAAGGTGGTTATGAGAAAGTATTCAAGCAAACCTTTGAGGTTCTTCCAGAAGAGCAACTTAAGAAGTGGTTTGCTTGCTACCTCTCAACATCAGCAGGTCCAGTCATGGGAACTTTATACCTGTCAACAGCAAAGCTTGCATTCTGTAGTGACAGTCCTCTTTCATACACAAACGGTGACAAGACTGAATGGAGCTATTACAAGGTGGTTATTCAGTTGGATCAGTTGAAAGCAGTTAATCCCTCAACTAGCAAAGTAAACTCGGCTGAGAAATACATCCAGATAATTTCAGTTGACAACCACGAGTTTTGGTTCATGGGGTTTGTATACTATGATAATGCCGTGAAGTATCTACAAGGTATAAACGCTTTTGCCAAATTATATTCTGAAGACCAAAAAAATATCTATTTTGTACAATATTGTGGTGATGTTATTTCCCTATTTATTGGTTCTTAG ATGCAAACAGCCGATGCAACTGCAAGTGGAGCTGAAGTCGGTCCCACCTCCAATTTTAATGCACTTGACCTTGGGTCACATACTCACATATGCGACCCAGTTTCCATTAAAACATTTGTAACGGTAAAACCAATCACAGCATTCGTCGATTTTCCCACCAATCTACCATCCTTCTGTAAACTTCACTTCCATTTTCCATACACCTCTTTCTCTCTCCTCAATCATCACAAATCCACCACCATGGATCACCAACCTACCACCCCTACCCCCACCGCCGACGAATCCAAACCCGTTAACCCGACTCCGAACCCAGATCAAACCTCCAAACCATCACCCGAACTCCACTCAGCGGAGTACGCACCATACCCAAAGCTAGACCCAAACGACGTCGTTCCACCGCCGGACCCCCTTCTCGCTCCTCCTCCACCTCCCAGCGCCACCAACATGCCTTCTGAGTCCAACCCTTACGTGTCAGCCGCTCCTGCTCCCAAAAAAACGATTGATTCGATGAAGGATGTGCTGGAGAAATGGGGAAAGAAGGCTTCTGAAGCTTCTAGTAAGGCGCAGGATCTTGCTGGCAATATGTGGCAACATTTGAAAACAAGCCCCAATGTTGCTGATGCTGCAGTTGCAAGAATCGCTCAGCAAACAAAAGTTATCGCTGAAGGTGGTTATGAGAAAGTATTCAAGCAAACCTTTGAGGTTCTTCCAGAAGAGCAACTTAAGAAGTGGTTTGCTTGCTACCTCTCAACATCAGCAGGTCCAGTCATGGGAACTTTATACCTGTCAACAGCAAAGCTTGCATTCTGTAGTGACAGTCCTCTTTCATACACAAACGGTGACAAGACTGAATGGAGCTATTACAAGGTGGTTATTCAGTTGGATCAGTTGAAAGCAGTTAATCCCTCAACTAGCAAAGTAAACTCGGCTGAGAAATACATCCAGATAATTTCAGTTGACAACCACGAGTTTTGGTTCATGGGGTTTGTATACTATGATAATGCCGTGAAGTATCTACAAGGTATAAACGCTTTTGCCAAATTATATTCTGAAGACCAAAAAAATATCTATTTTGTACAATATTGTGGTGATGTTATTTCCCTATTTATTGGTTCTTAG MQTADATASGAEVGPTSNFNALDLGSHTHICDPVSIKTFVTVKPITAFVDFPTNLPSFCKLHFHFPYTSFSLLNHHKSTTMDHQPTTPTPTADESKPVNPTPNPDQTSKPSPELHSAEYAPYPKLDPNDVVPPPDPLLAPPPPPSATNMPSESNPYVSAAPAPKKTIDSMKDVLEKWGKKASEASSKAQDLAGNMWQHLKTSPNVADAAVARIAQQTKVIAEGGYEKVFKQTFEVLPEEQLKKWFACYLSTSAGPVMGTLYLSTAKLAFCSDSPLSYTNGDKTEWSYYKVVIQLDQLKAVNPSTSKVNSAEKYIQIISVDNHEFWFMGFVYYDNAVKYLQGINAFAKLYSEDQKNIYFVQYCGDVISLFIGS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23816.1 vs. NCBI nr
Match: gi|902228016|gb|KNA20931.1| (hypothetical protein SOVF_047960 [Spinacia oleracea]) HSP 1 Score: 517.7 bits (1332), Expect = 1.700e-143 Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 1
BLAST of Spo23816.1 vs. NCBI nr
Match: gi|731312585|ref|XP_010675479.1| (PREDICTED: GEM-like protein 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 432.6 bits (1111), Expect = 7.100e-118 Identity = 226/269 (84.01%), Postives = 242/269 (89.96%), Query Frame = 1
BLAST of Spo23816.1 vs. NCBI nr
Match: gi|702370278|ref|XP_010061502.1| (PREDICTED: GEM-like protein 1 [Eucalyptus grandis]) HSP 1 Score: 342.4 bits (877), Expect = 9.700e-91 Identity = 180/262 (68.70%), Postives = 212/262 (80.92%), Query Frame = 1
BLAST of Spo23816.1 vs. NCBI nr
Match: gi|357465343|ref|XP_003602953.1| (FH protein interacting protein FIP1, putative [Medicago truncatula]) HSP 1 Score: 339.0 bits (868), Expect = 1.100e-89 Identity = 175/251 (69.72%), Postives = 201/251 (80.08%), Query Frame = 1
BLAST of Spo23816.1 vs. NCBI nr
Match: gi|727610065|ref|XP_010478185.1| (PREDICTED: GEM-like protein 1 [Camelina sativa]) HSP 1 Score: 339.0 bits (868), Expect = 1.100e-89 Identity = 170/247 (68.83%), Postives = 207/247 (83.81%), Query Frame = 1
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN31_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047960 PE=4 SV=1) HSP 1 Score: 517.7 bits (1332), Expect = 1.200e-143 Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 1
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FVR5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g008070 PE=4 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 5.000e-118 Identity = 226/269 (84.01%), Postives = 242/269 (89.96%), Query Frame = 1
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Match: A0A059BS59_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02124 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 6.800e-91 Identity = 180/262 (68.70%), Postives = 212/262 (80.92%), Query Frame = 1
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Match: G7J579_MEDTR (FH protein interacting protein FIP1, putative OS=Medicago truncatula GN=MTR_3g100750 PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.500e-90 Identity = 175/251 (69.72%), Postives = 201/251 (80.08%), Query Frame = 1
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Match: M4D344_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 9.800e-90 Identity = 166/234 (70.94%), Postives = 198/234 (84.62%), Query Frame = 1
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 5.500e-86 Identity = 161/238 (67.65%), Postives = 198/238 (83.19%), Query Frame = 1
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 8.500e-71 Identity = 135/206 (65.53%), Postives = 164/206 (79.61%), Query Frame = 1
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2) HSP 1 Score: 209.1 bits (531), Expect = 8.000e-53 Identity = 117/208 (56.25%), Postives = 145/208 (69.71%), Query Frame = 1
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.300e-36 Identity = 80/192 (41.67%), Postives = 128/192 (66.67%), Query Frame = 1
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.200e-35 Identity = 95/246 (38.62%), Postives = 133/246 (54.07%), Query Frame = 1
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Match: AT1G28200.1 (FH interacting protein 1) HSP 1 Score: 319.3 bits (817), Expect = 3.100e-87 Identity = 161/238 (67.65%), Postives = 198/238 (83.19%), Query Frame = 1
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Match: AT2G22475.1 (GRAM domain family protein) HSP 1 Score: 268.9 bits (686), Expect = 4.800e-72 Identity = 135/206 (65.53%), Postives = 164/206 (79.61%), Query Frame = 1
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Match: AT4G40100.1 (GRAM domain family protein) HSP 1 Score: 183.3 bits (464), Expect = 2.700e-46 Identity = 107/208 (51.44%), Postives = 132/208 (63.46%), Query Frame = 1
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Match: AT4G01600.1 (GRAM domain family protein) HSP 1 Score: 154.5 bits (389), Expect = 1.300e-37 Identity = 80/192 (41.67%), Postives = 128/192 (66.67%), Query Frame = 1
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Match: AT5G13200.1 (GRAM domain family protein) HSP 1 Score: 152.1 bits (383), Expect = 6.600e-37 Identity = 95/246 (38.62%), Postives = 133/246 (54.07%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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