Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAATAAGATTCCAAAGTAGAAATATAAAATTGGATTAATTAAAATAAAAGTAAATAGAACCGCAAATGGAAAGGGAGAATATGGAATCAGAAAAGTAGGGCCCCAAAATCAGGTCCGCGTGAAGAAGAAGCAGCCTCCTCACGATAAAAAGCCTAAGCCAATCTCCCCCATAATTTTCAACCTTCATTCAACTCTCATCCTCATTTTCTCTCTCTTCCTCCTTCTTCAACCTCCGTCTCCTGCAATTTCCGCCGTCGGACTGAAATTTAGGGTTTCTCTCTCTGGCCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAAGATCCTCCTACTTCTTGCAGCGCCGGTACTTTTACTTTTTCCCTTTCCTCTTTCTGTAATTTATTGCTGACTTAATCATAGTTATTGTATAATTTTTTTACGTAATTTGTTTTCTGTTTATGTAAATTAGTCATTGGATGATTGGATGCAGAGAGTTTTTGTTTTTGCGCAAGATCTGTTGGAATTTTTTATTCATTTTTGGCGGAAATTGGATTTATCTATTTTCAGCGTGTTTTATCTGTTTACGAGCATGTAGGAATTACTCTGGTTTGGTTTTTTTCCATAAGAGGAAAGAAATGACAAAAAAAGTATTCAGAGGTTCAGTAACCTCAGACCTCCATTTTTAAGATGTGGTGGGAATCTTATAGTATATACTTTCTATTTCTTGTAAAACTTAGATTGATTAATAAACATAGGTTAGTTGTTTCGAAGAACATCGCAATTAGTAATTAAATTAGAGAAAGTTTTGAGCCAAGGCATGGGAAAGTTAAATGGTAGGATCAAGTAAGAGAAGAAGTTTACTAGTTTGCGAGATTGAAATTGAATGGAGTTATGAAATTGAAGAAGTTTACTAGTTTGCGAGATTCAAATTGAATGGACAAAATGTTAGGGGAATGGTGTGCCGGTGCCAGGGCTACGCCCTGGGTAGCAGGAATTTAGAGAACACTGCATTTCAAGCTTTGCTAAAACTTTGGAAGAACCTTTCTTAGAATCTACTTTTTCCCCTATCAGATCTCATGTTCTTGTGTGTTTTCTCAAGTATTATCATTAGAGGCGACAATTGCTTGTTTATGGCATTATAATATCCCAAAGTATTATCCTAATTAATATTTTGATATAGAGGAAGTTTAGGCAAGTTTGGGAAGTACTTTATAAGATTGATATTGAGTGGATGGGTGGCTTAATTGAGGTGAGCTAGCACCTTGGGTGCAGGAAGAACACATAATTTTTGCACACAAGTAGCTAATTTTTTTGAAGAACCTTTTTAAAATGACTCGTTATTGTCAAGTAGTATCTGTAGATGCTACAATGCTACAGTTTCTTGTTTATGGCATGTTTATGATATTCATAGAGTATCATCCTATTTGGAACATTTTGGTTATTTTCTTTTATAATTGGATGAAATAAGGGCTTATGCCGCAAGAGATAGAGCTTATTTTATTGATAGATTTCAGTGTAGTGATATTTTTCCTTATCCCGATAATGATTTGGCAAAGCATAGGGACTTTGTTTGCAGATGCTTGTGTCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAGGGATTGGAGCCGTGGAGGAGGTAAGGAAGTGAGATAAAGAATTGAAGGATAGGATCTCTGTCTAAGGAGGCATGGTTTTCTTTCGCTTTCTCTTCGAACCGGAAATAATGACATATTGATAACTATTCACTTTTTGACTGAATCAAACAAGTTATTGATAAGATGTTCTCCAGTGTCTTCCCTCAAAGGGAGGCTATAGAAGAAACACCTTGGCTGGTTTAGATGCAAATTTGGATCCCATAATTTTACTTTGGAACAGGGTGAAAATTGAAAAGAGTGGAAGTATGTATGTTACTTGTGAGACCATTTTAATTATTAAGGTTAGTTGATGGGATTCAATGTCTTCCTTAAGGTTGTTTTTGCTACGACTTTACTGGTAGAAGCTAGAATATCTGGCTCTACTTGTCATAGATAAATGTATTTACGTTGGAAGTTAATTTGTGGTTTTCAGGTGGCCACTCTGGGAAATAATTAATTCTTAACAGGTGTTTGTACATATCCTATACCTTTTCTGCTTTTGATAGTCATTTGAGTGATCATAGTTTAAAATTTTTATTGTTGCTCAGTGTAAGCTATTTGATTATCCTCTAGATCGACAATTGGACACCTTGTTATTTGGTGTAGGCTTAGCATTATATTTATGGGAACTTTACACTTCTTTATGTTGCATTTTGTTGGGATGTGATTTTTTATGATTCAGTGTTAAAGGGATACTTATTGGATGAGGTGGAAGGAGCTGGTTAGAGTGGTTACATTTATTTTTCAGAAATGTCCTCCAGAAACTCATGTAATTTTTCTTGTTATGTCGCAGGTCCTGTTGCTGAAGATATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCAGATAGCCCATATGCTGGGGGAGTGTTTCTAGTGACAATCCATTTCCCTCCTGACTATCCATTTAAACCACCCAAGGTAGTGTTGTCGGGCTGTGACTTTGGTTCATATTGCGTTTAGGCTTTTTTTTTTAGCAACTGCTATGCAACAGCCAATAGGACCCATTTTGAACTTTTGACCTTGCTTATTCTTGGACAACCTTTTTGCTACAATGTAGTCTTTTCACCTGAGATTCATGATGCTTTAACCTAAGGTTTAAATCATGCGCTTGTCTGGTCGTAGAGCTTACTAAGTGATACTTTATCTTGTTTGATATTAGGCTGTAAAAGTTGTTCCTACCTAGCCAGCAACAGTTCTGTTCTCGTGTTGTTTGGTTACACGAAGAAACGCTGGTGATCATTTTGTCAGGATTAAATTATATTTCTGTCGACACACTTAGTCTTGCCTGTTTGCCATTTATCTGTGATTATAATTTTGTTGATATGTTCTTGAACTGTTTTGTTCCCTTTTACCTGCGCAGGTTGCCTTCAGGACAAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGACATCCTAAAGGAGCAGTGGAGTCCTGCATTGACCATATCGAAGGTTCTGATTTAGAATATCTCAAATTCTAGTGTTTTTAGTAGCTGTTTAGATCACTCTGACTGATATTTTGCTTAAAAGATGATTGGCATTACCTTGAAATGTCTCCAATAGCTAGACATGGTAGTAGATCCATTTCCATTTCTAATCATTGGACTTTCCAATTTTCCATTCCCTGGATAGAAACAATAAACTTTATGCGTAAATATGTGGCTGTTTGGAGGTTTCAAGACTTAGCGAGTAGTAAATACTTGTTTCAATCATGGAAATTTTCACTTGGTCGTGGTCCTTGTGGACAACATAGGTACATGACAAGGTCTAAAACTTGTGTTGTGGTAGAGTTCATACGCTTGATTGGAGCAGCTAAGTTGGGCTTGTTCTGTTATCAGTTATTTTTCCCCCCTTGTCTGTTGAGTGTAGACAAACACCAATCCTCGATTGAGCTCAGTTTTTAAGATCTTTTTCTTCGTATCTTTTAGCTCCTCATAATAACTTGATAGCAGTCGAGTTTGTAGAATGAGTACACCAGTTGCTTTTGGTTCCATCAGATTTGCTTTGCTTACTTGTCAGGCTGAGTACACCAGTTGTTTTTGGTTCCATCAGGCTGAGCGTATTTTCTTTCTGTTATCAGGTATTGCTGTCAATTTGCTCGTTGTTGACGGATCCAAACCCAGATGACCCACTTGTGCCAGAGATCGCTCACATGTACAAGACAGACCGATCAAAGTACGAAGCAACTGCAAGGAGCTGGACGCAGAAGTATGCTATGGGTTAGTCTGCCTTGTAGGTGGGGGATAAGATAAGGACCACCCTCCCTCCATTGTGTATAAAATGGCAACTCATTCTTCAATGTTAAAAAACTGTTGCAGCAGACATTTAAAATTGGAATTCTTGCTACTACTACTTGAGGTCAAAAGCAAACGCTTTACATTTGTCTGTTGGAACTGAGTATTGTGTTAATTTGAATCTGTTGAATTTATCTTAGTTTTTGTGCTTCTCTAATGAGGGAGTAATAAGAACTTACGGTTTACTAGTTTTTTTTGGTAGTATGATTTCTTGTGTTGTTTCCTGTAATCCTATCTATATCTTTTGTTTCCTTTTTTTTTTTCTTTTGTGTTGTAGTTGGTACACTTGGTTGTATGTAGCTCTACATGTAATTGGGTCGTTTTGTATTTTTATTCCTTCAAACATCACATTTTCATTGTTAAAAGCACGTAATAACCGATTAAAAACACATTTTTACAAGCAAAATTACATCCGCTTTAAAAGAACATATTGTTAAGTACAACATATTCACTGGAAAAAAAAATGGAAAAAAATGTATGTGCTTAAATTGTAAAAATGTGCTTTTAAATTTAAAAGGTGTGCTTTTA AGAAATAAGATTCCAAAGTAGAAATATAAAATTGGATTAATTAAAATAAAAGTAAATAGAACCGCAAATGGAAAGGGAGAATATGGAATCAGAAAAGTAGGGCCCCAAAATCAGGTCCGCGTGAAGAAGAAGCAGCCTCCTCACGATAAAAAGCCTAAGCCAATCTCCCCCATAATTTTCAACCTTCATTCAACTCTCATCCTCATTTTCTCTCTCTTCCTCCTTCTTCAACCTCCGTCTCCTGCAATTTCCGCCGTCGGACTGAAATTTAGGGTTTCTCTCTCTGGCCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAAGATCCTCCTACTTCTTGCAGCGCCGGTCCTGTTGCTGAAGATATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCAGATAGCCCATATGCTGGGGGAGTGTTTCTAGTGACAATCCATTTCCCTCCTGACTATCCATTTAAACCACCCAAGGTTGCCTTCAGGACAAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGACATCCTAAAGGAGCAGTGGAGTCCTGCATTGACCATATCGAAGGTATTGCTGTCAATTTGCTCGTTGTTGACGGATCCAAACCCAGATGACCCACTTGTGCCAGAGATCGCTCACATGTACAAGACAGACCGATCAAAGTACGAAGCAACTGCAAGGAGCTGGACGCAGAAGTATGCTATGGGTTAGTCTGCCTTGTAGGTGGGGGATAAGATAAGGACCACCCTCCCTCCATTGTGTATAAAATGGCAACTCATTCTTCAATGTTAAAAAACTGTTGCAGCAGACATTTAAAATTGGAATTCTTGCTACTACTACTTGAGGTCAAAAGCAAACGCTTTACATTTGTCTGTTGGAACTGAGTATTGTGTTAATTTGAATCTGTTGAATTTATCTTAGTTTTTGTGCTTCTCTAATGAGGGAGTAATAAGAACTTACGGTTTACTAGTTTTTTTTGGTAGTATGATTTCTTGTGTTGTTTCCTGTAATCCTATCTATATCTTTTGTTTCCTTTTTTTTTTTCTTTTGTGTTGTAGTTGGTACACTTGGTTGTATGTAGCTCTACATGTAATTGGGTCGTTTTGTATTTTTATTCCTTCAAACATCACATTTTCATTGTTAAAAGCACGTAATAACCGATTAAAAACACATTTTTACAAGCAAAATTACATCCGCTTTAAAAGAACATATTGTTAAGTACAACATATTCACTGGAAAAAAAAATGGAAAAAAATGTATGTGCTTAAATTGTAAAAATGTGCTTTTAAATTTAAAAGGTGTGCTTTTA ATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGGATCTCCAGAAAGATCCTCCTACTTCTTGCAGCGCCGGTCCTGTTGCTGAAGATATGTTCCATTGGCAAGCAACAATAATGGGTCCTGCAGATAGCCCATATGCTGGGGGAGTGTTTCTAGTGACAATCCATTTCCCTCCTGACTATCCATTTAAACCACCCAAGGTTGCCTTCAGGACAAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGTCTTGACATCCTAAAGGAGCAGTGGAGTCCTGCATTGACCATATCGAAGGTATTGCTGTCAATTTGCTCGTTGTTGACGGATCCAAACCCAGATGACCCACTTGTGCCAGAGATCGCTCACATGTACAAGACAGACCGATCAAAGTACGAAGCAACTGCAAGGAGCTGGACGCAGAAGTATGCTATGGGTTAG MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01622.1 vs. NCBI nr
Match: gi|566175638|ref|XP_002309194.2| (hypothetical protein POPTR_0006s11070g, partial [Populus trichocarpa]) HSP 1 Score: 312.0 bits (798), Expect = 5.600e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. NCBI nr
Match: gi|731311410|ref|XP_010669422.1| (PREDICTED: ubiquitin-conjugating enzyme E2 28 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.0 bits (798), Expect = 5.600e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. NCBI nr
Match: gi|356532139|ref|XP_003534631.1| (PREDICTED: ubiquitin-conjugating enzyme E2 28 [Glycine max]) HSP 1 Score: 310.8 bits (795), Expect = 1.200e-81 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. NCBI nr
Match: gi|224072097|ref|XP_002303624.1| (ubiquitin conjugating-like enzyme family protein [Populus trichocarpa]) HSP 1 Score: 310.5 bits (794), Expect = 1.600e-81 Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 1
BLAST of Spo01622.1 vs. NCBI nr
Match: gi|255537701|ref|XP_002509917.1| (PREDICTED: ubiquitin-conjugating enzyme E2 28 [Ricinus communis]) HSP 1 Score: 310.1 bits (793), Expect = 2.100e-81 Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 1
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D7K6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g003580 PE=3 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 3.900e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Match: A9PCT2_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 3.900e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Match: B9HDK6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s11070g PE=3 SV=2) HSP 1 Score: 312.0 bits (798), Expect = 3.900e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129120 PE=3 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 3.900e-82 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Match: A0A0L9TC71_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan503s002300 PE=3 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 8.700e-82 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.100e-82 Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.100e-82 Identity = 144/148 (97.30%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.900e-82 Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 2.500e-82 Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 4.300e-82 Identity = 142/148 (95.95%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Match: AT5G53300.1 (ubiquitin-conjugating enzyme 10) HSP 1 Score: 305.8 bits (782), Expect = 1.400e-83 Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Match: AT4G27960.2 (ubiquitin conjugating enzyme 9) HSP 1 Score: 305.1 bits (780), Expect = 2.400e-83 Identity = 142/148 (95.95%), Postives = 148/148 (100.00%), Query Frame = 1
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Match: AT5G41700.4 (ubiquitin conjugating enzyme 8) HSP 1 Score: 300.1 bits (767), Expect = 7.800e-82 Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 1
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11) HSP 1 Score: 299.7 bits (766), Expect = 1.000e-81 Identity = 139/148 (93.92%), Postives = 147/148 (99.32%), Query Frame = 1
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Match: AT5G56150.1 (ubiquitin-conjugating enzyme 30) HSP 1 Score: 288.1 bits (736), Expect = 3.100e-78 Identity = 133/148 (89.86%), Postives = 142/148 (95.95%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01622.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01622.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01622.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01622.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|