Spo27130.1 (mRNA)

Overview
NameSpo27130.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionNon-specific lipid-transfer protein
Locationchr5 : 27984000 .. 27987876 (-)
Sequence length285
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGGTTAGGGGGTGGGGGCAACCGACTGCGTCGGGGGAGGAGGGGAGGTTCACCGGCTGCGTCGGGGGAGGGGGGTGGTTCACCGGCTGCGTCGGGGGAGGGGGGGTGGCTCTTCAACTTTCTATTTTTAATTTCTCTAAATTGGTCGAAGGAGGAGGAAGGCAGACAAGCTTTTTTTCTTCTTTTAATTTAGTGACCGTTTTTTGGTCATTGATTATTTAATTTTTTTTTAACTTTTTTTTAAAGTTTAGCGACCGCTTTTTTGGTCGGACATATTATATAGGCGGTTATTAAAATTTTAAATTTATTTTGAAAATAGTCGGAATTTACCGACTGCTCATTAGTCGGAATGGAAGTTTATGCAGTCGATAAATTTACGACTGTTATGAAAGCGGTTGGTAAATTTTAAATTTACCAACCGCTCTACATTCGGTCGGTAAATTTAGCGACCGTTTCTGATTCGGTTGGTAAATTTATTTTTACTGACTACTTTCACGTCGGTCGGTAAAATCAGTTGGTAATCAAGCGCTTTCTTGTAGTGATAGATACATCCGGTGCGTAGTAAATGTAGGAAAAAAGAGCTGCTGAAACCAAGAATTTATGATTAATAGTCGTATAAGATGTTACCCGATTATATAACATATAGGAAAAAATAGTTGCGTCGTGGTATGAAGGCCACTGACTTAGAAGCAAATTTTGCCACTAACGGTACAGGCTCTCAAGTGACGAATGCCCCCCAAGGTTAACACAACTCTCCTTCAAATCCGTGTACCCGAACTTGAAAGGTGGAACTGCTCAAGAACTGCTCAGATCTCTAATAGGATTTTGGGTTTGTGTTTATGGTATATGTGCGTGTATCAGAAAAGACCAGAACTTTGATATGTATATACCGTATACAAAGAGGAATACATCAATTGATTAGAAGAGAGAGAATATTATTGGGACCCGCCAATATTGTAAACCTCCTAAGAATTCCAAGTTCCACGTAACTCTTGTCAATATGCTAATATCAAAATACAAAGAAGAAAATCATGATTCTTATCCTTAAATTAGTTAGGAAAGGCCTAATAAAAAGGGTGAAAGAGTTTTGTGGTTTACAAACTCGTTGACTTTGTATGATTTAAGGGGACAAGAATTAATTGGCATTCTTTCTTCACAAACAGTGAAGATCACTGCCTACCCGCGGCTCATGATACAAGCCACACTTTAGCTGTGGCATTAACTGACCATCATCAAAAATAGTACCAAGTATCTTAATTTTTGCATTACGACCAACAGTAAATATTATGGTACGCTTTCTCTACATACCCAAATAATTTGGATACATGTTATCTTTATAATTGCATTTCTTAACCCTTGAAAAGCCTTAAAACACTTAATATTTTAATGATGACACGATTTTCTTAAAATCTATGAAGTTCATGTGAAAGATAAAGACAGTCCTATTTTTAGCAATAATGGGCCGAGTGTGTTGAAGAAAAAGAAGATCACCCATCTTAAATGATAATATATTTACAAGCCCAAATGTGAATTTCTTTTTGTACAAAATGGGTCTTACTAAGGCTCGATTCTCTCCGCAGTATTACTTTGCTTAATTTATTTTTGATTAGCTTCATATTATGTTTTGTTGAAATTTACTTATTTTTTTGAACTCATATTGTTTTGTTGGTGTCGAACTTCAATTATTTTTATTAATTTAAGGTAGTGTTTGGATACATTATTTCATTTGAAATGATTCATCTCAAATGTGGAAATTCAAATACTGGAATTCAATTTCAAATTCTTTGTTTGTTAAAAACCAAGAATTTCAATCATTTCAAATTTCCAAATTTCCAAATTTCATTGAAATGATGGTATCCAAACAAAGAGGAATTTTAATTTTTAGAATTTTGATTGCATCAAATGTTTGACAGGTAAACAAATTATTTCATTAATGAAAAAGAATATTACATCCAAAAAATCATAAATAGTTGCATTCAATTGAATCTGACAATCCTAGATAATATAGTCCAAACAAATGAAACTGTGATAATTCAACAACAATTAAATATGTCAATTCTTGAAATTATTTGATTAATCAACATTGTATAACAGAAATCAAATTAACATGTTAATTAGAAATTTAGAACCATTAGAATTTGGGAAACACTAAACCCTAACTTTTCAAATTTCCAAATTTCATTGCCTAATCTTGCCATGGTGTCTGAAAATGATGGCGACAAAGGATGCGAATCGGTGGTGGTATAACAATCCGAGGACTTGCGACAAATCCCCAAAATAATAAAACCTAATTCGACGAAGACGTCGATCTGTCTATGGCAGAAGAGGGAGAAATCCATATGGTTCAAGAGCTTGAAAGATTATTACACGCGAATCGGAAAGCCATGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGGACTGGAAAATCAACACTTGTTGCAGCCATGGCTAATCTTCTCGACTACGACATCTACTATATTGAATTAACAAGGAGTTAAAAAAGGTTGTTGATTGACAAAAAGATGTCGAAGAACATTAACATTGATGAGAGTAAGTTGATCGCGAACCTCTTCATCTTCAATAGCGTCCATTCGTTAATGGAGCTTGGAGAGTTTGGGGGAGTAGAGGAGAGAGAAAGGGGAGAGAAAGAGCGGTTGTCTTTCTTGGATTTCAAATGACAGCAATTGTAAATGGATTTCAAATGACAGCATGTTGGGCTTAATTTGCATAGGGTTGGATTTGGACCAAATCCAAATCCAAATCGTTTTAATTCCCAAACAATGTATTTGGGCCAATTCCATCATTTCAAATGAAATGATGGTATCCAAACAGGCCATAAGTAACTTTACGAAATATTTACTTTGTGGTGATTAAAACAATCCCTAAATTACACTTTTTTCGAAGATGATTACTAAGTATATTAAATTGTAATTTCATAACCCTCAACTCCTAAAGGTTATAATGAATGTTTAGTACGGAGTACATAATATGATAATATCACATTTCTACCATTTCTCCATTAGCTTCTTGTCTACGACCCCCCGAGGCTAGAGATACGTTTATCAATTTCCTTTCTAGAGCACGTTGTTAGACAAACATTAAATTTTTAGATGATGAGAACATGTACACAGATCCCAAGGCCACCCACAACAACAATTGGGAGAGGACTGTAACCTCTCCACTCACAACTCGCCCCGAATCCGGATTAGCCCTAAGGATGAACCGTGTGTTAACACCAAAAAAAAAGATCACAAGGTCGGCCCGACTGAACTTATGAATGAAATGCAGACATGTACGTATGCCTAGGATACAAGTGTACAACCTCACTTTTTAAGAGGCTTTGATGAGTTGATGTATACCGTTTAACCAAGAAGGTGAGTCATCATACTACAATCACTAAGGTAGCATTAAATAATCTCCAACTATCAACTAACAACTAACAAGTAATTAACAACCCACACCCAATCCAAGAAAAGAATCAATTTTAAGCTCCCTATAAATAGAAGCAACAATGAAACTCCTGAACCATATATCAACTGCCAATTAATTCAAGAGAGCATTATATCCTTTAACACAGCCACATTCTCTTAGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

mRNA sequence

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Coding sequence (CDS)

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Protein sequence

MWFTGSRERVTAALEVGAGGAGVPCAAGLGGRAIWPSRGTNIMDSSAVVVKLGCALLIMCMLMHVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo27130Spo27130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo27130.1Spo27130.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27130.1.CDS.2Spo27130.1.CDS.2CDS
Spo27130.1.CDS.1Spo27130.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo27130.1.exon.2Spo27130.1.exon.2exon
Spo27130.1.exon.1Spo27130.1.exon.1exon


Homology
[Close]
BLAST of Spo27130.1 vs. NCBI nr
Match: gi|731344615|ref|XP_010683515.1| (PREDICTED: non-specific lipid-transfer protein-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 

		  

Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51
[Close]
BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Q8_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157260 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 

		  

Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51
The following BLAST results are available for this feature:
BLAST of Spo27130.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|731344615|ref|XP_010683515.1|2.6e-868.6PREDICTED: non-specific lipid-... [more]
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BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8C2Q8_BETVU1.8e-868.6Non-specific lipid-transfer pr... [more]
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BLAST of Spo27130.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27130.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.110.10coord: 69..92
score: 1.

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0008289 lipid binding