Spo26918.1 (mRNA)

Overview
NameSpo26918.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSecE/sec61-gamma subunit of protein translocation complex protein
Locationchr6 : 32845631 .. 32848222 (+)
Sequence length1080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCATTTCTACCCTTACATCACATCCCCTCCCTCCCCCCGCGGCCCTCCCCCCTCACTCTTTCACTCAGTTAACTCCAACCACAACCATAACCATAACGACCCAGACTCACCCTACCCCCGCCATCACCGCCACTCACCCGAAGCCCTAAATTCGGAAATTGAATATGATTATACTTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACAGTTTGTTCTTGCTATTTCCAGGGAATTTCAATTGTTTTGGCTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGGTACCAACCTCATATATTCTAAAAATCACTGGTTTTGCTGAATTTTTTTGAATAGTTGTATGGAAGACATTGAAAAAATTCTCACTGTGCTTTCTATTTAATGTAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGTAATTATTTGTCTAATTATTCTATTGATTATGATTTCTCTAAGCATATTAGTGTTTTGTATGGATTTTTTAAGTTGCCTATCTTTATATATTGCTAGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGTATTAGGATTAGACACAATTGTGTGGATTCTGGTTTCATACTGGGGTTGAGACTTGAGATAAGTAGTACTAGTAGCCTGTAATTGTACTGAGTTGTTTGTTGTGCCGTATTCTTCTCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGGTACAATCCTTGCCTAATGTTGGATACATTTTTGTTTATTGCATTTTATTTGCTTCTGTAGAATAGTTTAGGCCTTGTTCATATTAAACAGATACTTGTCTGAATTGTGGTAGTATAATTGCCTATGTTATTTAACTTCAAATAGAAGTAATTGAATCAGAAATTCAGAATATGTAAATTATCAGCTCAATATGCCAACAAGATGCATAATAGTATAATACTTCTATTTTAACATAGTCTAGTCTCTTAGTACTCGTACATGAAAGTCCATAGATGTTGGAGTTTCCAGGACATCGTATCTCTCAAAACCTTTGGCAAATTTTCTGTGTAATTTTGTTATATACAGAGCATACCGCAATTTGATGCTGCAGTGGAATGATTAGACCTTGCTGGGGTTGAACTTGTTGTAAAATTTGTTTGAATATGTTCTTGAAATATGTTGACAAAAGACTTGGAATGCAAACTTGGGAGCTCTATTAACTTGGTTTTTCTTGGGTACAAACCTACAAATTTTTGCTATATATCTCATTGGTACTTTTAGTGTAATTCCCATGGAAACAATGTAGTTTGTTTGAGATCTACGGGACATCATCTCATCATATTGCCTTAGACTCGTGAGTCTAAGAGCAGCACTGTAAGTGCCTTGTTGATTATATTTCATTTCCTTATTCCAAACCAAGCCCTTCTCGAAGAGCATGATTTCAATTTAATTGTATCAACTTGGTGTGTTCGGAATATGTCGACATTGGTATAGTAATGTCGTTGTTTGGTTACAGAGATGCATAATTATACACAACAGTCTTGAGTATTTTCTTTTTTCTTCTCTTCTCTCCCAATAATGGCTTTGTGCCTGGACATGCTTGCAAAATTACTTGGGTTATTTTCTATGATGTTTTAACTCCTTTCTGTTGTTAGAAAGCATTATTGTATGACTTTGACTGAACAAAGGGACCCTAGATTGCCTATCAAGAACCTGTAAGTCTAATGCCTAGGCCTTGTTTGAACATTGTGCCATAGAAAGCAGTAAAGTGGTGCATATAAAAAGTCCGAAATCTAACCTAGCCTAACCTAACATTTGGTACCTGATGTATTGATCAAGAATTAAGATGCTTGATTGCTTGTTTGTGTCAAAAGCATGCGTTTCATTAGGGGAGTTTTAATCTAATCTCGTTTTGTTTTTGGTTGCAGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGATGCAACCTGATTTGGTTTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCAACAGAATTTCATCTTCGTGAGGCTCAACTTGATAGATTTAAGATCAATGTACATTGTAGACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGAAGTTCGATCTTGTCTGTCATCGTTTTGATTTGCCATTTATAAAGCAATTTGGTTTGATCACTATTGGCATATGTCTTTGTCTTCTAGCCTATTCCAATCTACTCCGGATAACATACTTCTACCTCGTATTTCCTACCATTAAAGTATATACGTA

mRNA sequence

TTACCATTTCTACCCTTACATCACATCCCCTCCCTCCCCCCGCGGCCCTCCCCCCTCACTCTTTCACTCAGTTAACTCCAACCACAACCATAACCATAACGACCCAGACTCACCCTACCCCCGCCATCACCGCCACTCACCCGAAGCCCTAAATTCGGAAATTGAATATGATTATACTTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACAGTTTGTTCTTGCTATTTCCAGGGAATTTCAATTGTTTTGGCTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGATGCAACCTGATTTGGTTTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCAACAGAATTTCATCTTCGTGAGGCTCAACTTGATAGATTTAAGATCAATGTACATTGTAGACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGAAGTTCGATCTTGTCTGTCATCGTTTTGATTTGCCATTTATAAAGCAATTTGGTTTGATCACTATTGGCATATGTCTTTGTCTTCTAGCCTATTCCAATCTACTCCGGATAACATACTTCTACCTCGTATTTCCTACCATTAAAGTATATACGTA

Coding sequence (CDS)

ATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGA

Protein sequence

MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQVRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSFKDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26918Spo26918gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26918.1Spo26918.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26918.1.exon.1Spo26918.1.exon.1exon
Spo26918.1.exon.2Spo26918.1.exon.2exon
Spo26918.1.exon.3Spo26918.1.exon.3exon
Spo26918.1.exon.4Spo26918.1.exon.4exon
Spo26918.1.exon.5Spo26918.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26918.1.utr5p.1Spo26918.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26918.1.CDS.1Spo26918.1.CDS.1CDS
Spo26918.1.CDS.2Spo26918.1.CDS.2CDS
Spo26918.1.CDS.3Spo26918.1.CDS.3CDS
Spo26918.1.CDS.4Spo26918.1.CDS.4CDS
Spo26918.1.CDS.5Spo26918.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26918.1.utr3p.1Spo26918.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo26918.1 vs. NCBI nr
Match: gi|902203878|gb|KNA14718.1| (hypothetical protein SOVF_105000 [Spinacia oleracea])

HSP 1 Score: 320.9 bits (821), Expect = 1.300e-84
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRPRFSMSRGG YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160
[Close]
BLAST of Spo26918.1 vs. NCBI nr
Match: gi|902228858|gb|KNA21289.1| (hypothetical protein SOVF_044480 [Spinacia oleracea])

HSP 1 Score: 293.1 bits (749), Expect = 2.900e-76
Identity = 146/160 (91.25%), Postives = 151/160 (94.38%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           V+PRFSMSRGGNYGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160
[Close]
BLAST of Spo26918.1 vs. NCBI nr
Match: gi|731357643|ref|XP_010690320.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229
[Close]
BLAST of Spo26918.1 vs. NCBI nr
Match: gi|870849088|gb|KMT01351.1| (hypothetical protein BVRB_9g213650 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160
[Close]
BLAST of Spo26918.1 vs. NCBI nr
Match: gi|731357645|ref|XP_010690322.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 62  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 121

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 122 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 181

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 182 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 221
[Close]
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5D4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105000 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.100e-85
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRPRFSMSRGG YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160
[Close]
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044480 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.000e-76
Identity = 146/160 (91.25%), Postives = 151/160 (94.38%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           V+PRFSMSRGGNYGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160
[Close]
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIT5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229
[Close]
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1 

		  

Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160
[Close]
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A061DZS8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006567 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.400e-24
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 1 

		  

Query: 58  KKQVRPRFSMSRGGN-YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIE 117
           +K    R  MS G N + L FDDE  ++PFWL   +++I G++SL AFLV QPGQLKYIE
Sbjct: 54  RKPYMSRHVMSVGSNRHQLSFDDELPEEPFWLSLIRDSIWGVRSLFAFLVEQPGQLKYIE 113

Query: 118 WPSFKDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQK 159
           WPSF+ TL+TATLTLVLVA LIVALSS+D+ L YVLALLL++
Sbjct: 114 WPSFQSTLKTATLTLVLVAMLIVALSSVDSVLCYVLALLLRR 155
[Close]
BLAST of Spo26918.1 vs. TAIR (Arabidopsis)
Match: AT4G38490.1 (unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 5.900e-19
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1 

		  

Query: 82  DDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSFKDTLRTATLTLVLVAGLIVAL 141
           +++P WL   ++ +   +SL++F+  QP QLKYIEWP+F  TL+TATL+L LVA  IVAL
Sbjct: 75  EEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPTFASTLKTATLSLCLVAVFIVAL 134

Query: 142 SSIDAALSYVLALLLQK 159
           SS+DAAL Y+LAL+L+K
Sbjct: 135 SSVDAALCYILALILRK 151
The following BLAST results are available for this feature:
BLAST of Spo26918.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203878|gb|KNA14718.1|1.3e-8499.3hypothetical protein SOVF_1050... [more]
gi|902228858|gb|KNA21289.1|2.9e-7691.2hypothetical protein SOVF_0444... [more]
gi|731357643|ref|XP_010690320.1|3.3e-5671.8PREDICTED: uncharacterized pro... [more]
gi|870849088|gb|KMT01351.1|3.3e-5671.8hypothetical protein BVRB_9g21... [more]
gi|731357645|ref|XP_010690322.1|3.3e-5671.8PREDICTED: uncharacterized pro... [more]
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BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R5D4_SPIOL9.1e-8599.3Uncharacterized protein OS=Spi... [more]
A0A0K9RQX4_SPIOL2.0e-7691.2Uncharacterized protein OS=Spi... [more]
A0A0J8BIT5_BETVU2.3e-5671.8Uncharacterized protein OS=Bet... [more]
A0A0J8EEG3_BETVU2.3e-5671.8Uncharacterized protein OS=Bet... [more]
A0A061DZS8_THECC1.4e-2462.7Uncharacterized protein isofor... [more]
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BLAST of Spo26918.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26918.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G38490.15.9e-1955.8unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001901Protein translocase complex, SecE/Sec61-gamma subunitPFAMPF00584SecEcoord: 111..155
score: 7.
IPR022943Preprotein translocase subunit SecEHAMAPMF_00422SecEcoord: 99..154
score: 10
NoneNo IPR availableGENE3D1.20.5.1030coord: 102..156
score: 9.
NoneNo IPR availablePANTHERPTHR37247FAMILY NOT NAMEDcoord: 69..160
score: 4.0
NoneNo IPR availablePANTHERPTHR37247:SF1SUBFAMILY NOT NAMEDcoord: 69..160
score: 4.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006605 protein targeting
cellular_component GO:0016020 membrane