Spo26767.1 (mRNA)

Overview
NameSpo26767.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 11921373 .. 11926656 (+)
Sequence length618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGGTGACTCAGCTGCTGTTATTGTTTTGGCAAATTTATGACAATTCAACTTCTTCTTCCTACAAAATTAATCAAAATAATATCGGTGACTTTCTGCCTCCATCCTCCCCTTTTTCTTCCTTCACCCTTCTTCTTCACAGTGACCTTCCTCCACCCTTCTTCATCTTTATTCGATCTTCTCTAACCAGAGGAGTTCTCCTTCACCATGGTACATCTTTCTCTCTCCTCTCAAGGCTTCTTCTATTCCATCTTCAATCCTCTCTGATCTTTCTTATTCCAATCAATTTAATTGCGTTTTTTATTTGAAGCTAGGGTACCTTGGAAGATTTGTCTCCATTCAGATTTCTGAAAACAAGCCGATGGAGATCCGCCAGACATGTAGAAGGAGACGTGTATTCCATTTGGGTAAGCGAATCTGGGTGCGAATGGCATGTTGTGGTTGAATTTCAACTTAATTTCGCTAACCTGGTATGTAAATTGTAGTTGCACCTTAGATTCCAATGGTTTTTGGTTTTTGGTTTAGGGTTTAGATTGGGGTTGTTCTTATTTAACCTTTCCTTTCAAAATTCCATTTAGGTGCGTAGTAAATTGTAGGAGTATTTTGGTGCTATATCGTTGTGAGTATAATTTGAATAGAAATTCAATTTGCAGGCAACTGAAATTAGGTTGCAGATTTTAGTTCGTCTGCCTTTTTTTTTTTTTATATGTTGTCAGCAATTTCACTAAACATGATTTCATTAATCACTTTCTGATTAACAAGAGTTGGTATATTATATTGTTAAGTTTCCTAGATATGTGTGAGTTCCTGGATTTTTGGTTTTATGTTGTGGGAAATTTTATGGTTTTTATACCTATTTTCTGTTGGGAATCAACATGTTTTAGAATGCAACATGATGTTATTACGTGAGCTATATATTTGTTGGACTTTGTTGTCAAAATGTTGACAGGATAATGTCTCACAAGTGTTTAACCAATCTGATTATTTGAGCTATATATTTGTATAATTTCGGTCAGACTCTTTTTTCGAATTATTGACAAGATTGTGTCTCACAAGTGTTTACAAATGAACTTACTGTTAAAACTATTATCTGGTATTCATAGTTTTCACAGAAGGGCAAGCTTCACAAGATACTCAAGCCTCGTAGGTGGACCATTTTCAGAACCAGGCAAAAAAACAAGAGTTTGTTCTTGTGTTAGCTGAGAATGGTACACAATAGGATCTCTTTAGTGTTTGATCGTTTCTCCATTATTCTTCATATCAGATGCAAGAGAAAAAATATACTTATATATTATTAGATAGAACCAAAATACCAAATGCCTACAGTTGCTGTTAGAATATGACTAGGTAGAAGTTTAGAACCATTAACCGGTAGGATACAGTTTTCATGAAGCTAAACAATAACCCAATACTTTAAAGCACTTTGATGATATTCAATTAGTACCATGCCATTATTATCATGCCATTCCGAAACGAATGATTGTAAAGCGGCCTCTGTCTTCGTCACGCCGCCCACTAATAATCAAATTAAACATGGGTTAATCAATACATTATAAGTTAACTTTAGCAAGTCACTTCCTAACCAGGTTTTGTTGCCATCCTTGTTAAGATTCAAGTGTAATAGCCTGTTGATTACATTGACAGTTGGTATAATGATGCAGGAGTAGTTTAAAATGTAGTATGAAATGTTCATATATGTTTATCATGATACTCTTGCGCCTCTTTTCTTGATAGAATCTCGTGATAATTATATATTCCTCTGTTATCTGTCTCAAATGCTTTGAAATTTTCGGTTATTCCCTGTTACGAGTATCACTTATCAGAAGCTATAGGGTATATACAAGTTCAGAAATCTACCACATTCTGAAATTATGGTGAAACCCCCAATTATTTATTAATTAAATCACTTTGATGATATTCAATTAGTACCATGCCATTATTACCATGCCATTCCGAAATGAATGATTGTAAAGCGGGTTCTGTCTCCGCCACGCCGACCCACTAATAATCAAATTAAACGGATATTCGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGTAATAGAGGCGACAGTGATAGGCACGGTAGAGAGATTTACAACAAGAGGGTAAGGAGGGAGTAAAATTGAAGTAAGATTTGGGGTTGTGGGTTTTATTTTTCAGCTAAAGAGTTGTTCTGAATTTCTAATCGGTTATGAGAAGTTCTGAACATTTTCAATTCTATAATTTGTAGATAGTGTAAATGACCACCAACTAGGAAAAGGAATCCTTCTTGTTATCTTTGTGAGAATTATAGTTCAGTTTATCATTGGATGAATGACCAAATTTCTAACTATTACAGTATGACCTTTGATTTCATTGGTTCCCTAATGGTGTTTCACATATTTCATAGAAATGGTATATTGGGTCTGCAATGGTCCAAGAATTGAGATTTCCTTATATTTTTCATTCAGGTTCTTCCCATCATCTTGGATTCACTTCTCCACTATGTTCAGGGGTGGCATGGTATTAATTTTCCAAGTATGTTGCATCACTTAGTTATAAATTAAACGAACTATCGAATTTATGTTAACAAGCCTCAAAAAGAAAAGGGAGTAGATAATTTATGTCACCTAAAGTTTACCAGTATATGTTGTAATGGATCTACACTGGAATTGGAAGGTGTATGAAGGTGTTTCTCCTCCTGATGCTCTTAAGTGGGTTGGATGTTTTTCTTGTTGTCCTAATCACCGGTCCTTATGTTTTCATGTGGGTTTCCTTTGTGTGAATGTCGGTTGCAGATTAGTATTACTCGGCATATTTCTATAACCGATCTTTATTTTTCGTATAATGCAAGCATCCAGGGTGTTGAGGCTTAGAAGGGACACAAATACTATTGTGGTAGACCGTCTATCTAAGCATGTCAACTTGAACCACTATTATATCATCAGGGTATCTCTAACCTTGTTGTGGTTTTGTATATTTTAAGTTGATTCTCTTGTTGCTAAACTTCATATAAGTAATTTAAAAATTGCTTACATTGTCTAATTCTTAGCCTCATTTATGTGAAATGTGTCATTATGTGTTTAAATCCGGTCTTGTACTCTACAGTTTGTAGATTCTTGATTAAAAAAAAAGTTGAACTTGATAGTTTCTATATATTTTATGCGCAGATAATTTAGAAACTCACTTGCTTGTGTTTGGTATCCTAATTGAATGATGATGTAGGTCTTTGCATTGACGTTAGATTATAAGTTTAATCAGTTGATTTAAAGGAGAAATGTAGTGATGTTATAAAAAATTGGGAAATTTGTACCTAATTTGTTTTTGGTCCAAATCCATCTTTTCTTAACTTCCAATTGCCAACTCTGTAGTTATTTAGGAATTCAAATAAATTATTTTTTAAAATAATTTTTCCAAAAGATAACTATTAGTAAAATTTGATGATTAAGTAATGTAATTTAGGTTTTTGAGGATTAATTAGTACATGAGAATTTATATGAAAGATTTATACTGTTTCTTCATGTTCTATATGTAGTGAGACAAACATTATTTGAGTGGTTTAAGATAGACGTACAAATATTTGGAGATAGGAAGGAAATTCTAATTGGATGTTGATGTTTATAGTGCTTGGAGATAAACTAAATTAACCTCATTTATATTTCAAGCTGGTTCAAACATCATATTACCCTACATCGTATGCAACAACCTCTGTTCTAAACTAATTATCACGTTCCATAATTACTCATAGTCATATCTGAAAGACCAGTTACAGTAATTAGTGATTCCCAAAATATTAGCTGAGACAATACGGATGACTTTTATATGGAATGACGATAGCCTTTGGTTGTTTTGAGACATAACTAATTTATTTCTATATGACATGATTAATTTACATTAATCAAAGAGTTTGGTTGGGATAGTGTGCTATCAGATATGTGTCACACTTTTCTATCAGGGTCATACATTTATTTCATGTTTTGAGTACCTGATTATAGTGTAGAAACACGAAATCTTGGTCTTTAATCCTCATTTTTCTAGGATGCAAGTCTTATGAATTCATTGTCGTTTAAGTTTATGAACAAGTTTTTAAGAGGTCTTACTTATTGGGCATTTCAAACTGGCAACTCATACTGTATTGGTATTATTAACGATCAAATAACAGTGCATACATGACAAGATATTGTACCATTAACGACGAAAAATGTCGTCGTTAAAGGCCAATAACCGTTGATTAATGACAGGTTTTTCTGTCGCGAACCTGCATAAAAGGTGGCCTTCGTTAATGAAAAATCCCGTCGTTAACCCGTCGTAAAAGACATTTGCGACGGTTGTTCCCGTCTTTGTTTGGTAGTTATCCCCGTCGTAAAAAGGCTTTTGCGACGGGATTTTTAACCCGTCGTAATTAGGTTGTCGTTAAAGATACAAATTCTTGTAGTGATATAGGATACGGAATGAGATAAGTTGATCGGAAAATATAGAATGGAATACTTACTATATTATTATTAGAGAAACTTGCATAATAAGATGTCTTGTTAGTTCTGTAATCTTTATAACTGCAGTTTGCAGGCATCAAATTCTGCATCAAAAAGCCAACAGAGGCTTCAGAAAATTTTCTTATTTCTCATGACTATATCTGCTGTAATATACAGAGTTTTATATACACACTGGTGGGTTGTTAATACATATGTTGATAATACTTTACCTTGGTCTAGGAAAGAAGTCTAGCAAGCTTACTACTATAGGAAGGAGGAAACTACATACAAATTGCATAATGCATGCTGTCACTTACCATAAGATGATCTACTTCTGAAGTTCTCATCGTATGTCCAGTAACCCACGTCCTATAAGCAACGTTCCCTTGCCGTTTAGAGAAGCTGGAAAAGATAGAAAACGGGATGCGAATAATGGTGTAAATAACCAACAAACCATTCCAAGGTTGCCTACGTTGTTGTTCAACCTCATGATCATCATATATTATGGCGCCTATCCCATTGCCAAACATAGTCTCATATGCAACCTTTGGACTCTTCCTTTTGGTAAGAATGTGCTCCCTCAACCCCTTGATTCTTTTATCTTGCCTGTTGAATGA

mRNA sequence

AATAGGTGACTCAGCTGCTGTTATTGTTTTGGCAAATTTATGACAATTCAACTTCTTCTTCCTACAAAATTAATCAAAATAATATCGGTGACTTTCTGCCTCCATCCTCCCCTTTTTCTTCCTTCACCCTTCTTCTTCACAGTGACCTTCCTCCACCCTTCTTCATCTTTATTCGATCTTCTCTAACCAGAGGAGTTCTCCTTCACCATGCTAGGGTACCTTGGAAGATTTGTCTCCATTCAGATTTCTGAAAACAAGCCGATGGAGATCCGCCAGACATGTAGAAGGAGACGTGTATTCCATTTGGGTTCTTCCCATCATCTTGGATTCACTTCTCCACTATGTTCAGGGGTGGCATGTAACCCACGTCCTATAAGCAACGTTCCCTTGCCGTTTAGAGAAGCTGGAAAAGATAGAAAACGGGATGCGAATAATGGTGTAAATAACCAACAAACCATTCCAAGGTTGCCTACGTTGTTGTTCAACCTCATGATCATCATATATTATGGCGCCTATCCCATTGCCAAACATAGTCTCATATGCAACCTTTGGACTCTTCCTTTTGGTAAGAATGTGCTCCCTCAACCCCTTGATTCTTTTATCTTGCCTGTTGAATGA

Coding sequence (CDS)

ATGCTAGGGTACCTTGGAAGATTTGTCTCCATTCAGATTTCTGAAAACAAGCCGATGGAGATCCGCCAGACATGTAGAAGGAGACGTGTATTCCATTTGGGTTCTTCCCATCATCTTGGATTCACTTCTCCACTATGTTCAGGGGTGGCATGTAACCCACGTCCTATAAGCAACGTTCCCTTGCCGTTTAGAGAAGCTGGAAAAGATAGAAAACGGGATGCGAATAATGGTGTAAATAACCAACAAACCATTCCAAGGTTGCCTACGTTGTTGTTCAACCTCATGATCATCATATATTATGGCGCCTATCCCATTGCCAAACATAGTCTCATATGCAACCTTTGGACTCTTCCTTTTGGTAAGAATGTGCTCCCTCAACCCCTTGATTCTTTTATCTTGCCTGTTGAATGA

Protein sequence

MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLGSSHHLGFTSPLCSGVACNPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKHSLICNLWTLPFGKNVLPQPLDSFILPVE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26767Spo26767gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26767.1Spo26767.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26767.1.exon.1Spo26767.1.exon.1exon
Spo26767.1.exon.2Spo26767.1.exon.2exon
Spo26767.1.exon.3Spo26767.1.exon.3exon
Spo26767.1.exon.4Spo26767.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26767.1.utr5p.1Spo26767.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26767.1.CDS.1Spo26767.1.CDS.1CDS
Spo26767.1.CDS.2Spo26767.1.CDS.2CDS
Spo26767.1.CDS.3Spo26767.1.CDS.3CDS
Spo26767.1.CDS.4Spo26767.1.CDS.4CDS


Homology
[Close]
BLAST of Spo26767.1 vs. NCBI nr
Match: gi|902218101|gb|KNA17958.1| (hypothetical protein SOVF_075230 [Spinacia oleracea])

HSP 1 Score: 181.4 bits (459), Expect = 1.000e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 49  VACNPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH 108
           ++ NPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH
Sbjct: 1   MSSNPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH 60

Query: 109 SLICNLWTLPFGKNVLPQPLDSFILPVE 137
           SLICNLWTLPFGKNVLPQPLDSFILPVE
Sbjct: 61  SLICNLWTLPFGKNVLPQPLDSFILPVE 88
[Close]
BLAST of Spo26767.1 vs. NCBI nr
Match: gi|902218100|gb|KNA17957.1| (hypothetical protein SOVF_075220 isoform B [Spinacia oleracea])

HSP 1 Score: 73.9 bits (180), Expect = 2.400e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG 35
          MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG
Sbjct: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG 34
[Close]
BLAST of Spo26767.1 vs. NCBI nr
Match: gi|902218099|gb|KNA17956.1| (hypothetical protein SOVF_075220 isoform A [Spinacia oleracea])

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-9
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL 34
          MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL
Sbjct: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL 33
[Close]
BLAST of Spo26767.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REQ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_075230 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.300e-43
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 49  VACNPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH 108
           ++ NPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH
Sbjct: 1   MSSNPRPISNVPLPFREAGKDRKRDANNGVNNQQTIPRLPTLLFNLMIIIYYGAYPIAKH 60

Query: 109 SLICNLWTLPFGKNVLPQPLDSFILPVE 137
           SLICNLWTLPFGKNVLPQPLDSFILPVE
Sbjct: 61  SLICNLWTLPFGKNVLPQPLDSFILPVE 88
[Close]
BLAST of Spo26767.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGI4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_075220 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG 35
          MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG
Sbjct: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHLG 34
[Close]
BLAST of Spo26767.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REN4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_075220 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.200e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 

		  

Query: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL 34
          MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL
Sbjct: 1  MLGYLGRFVSIQISENKPMEIRQTCRRRRVFHL 33
The following BLAST results are available for this feature:
BLAST of Spo26767.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902218101|gb|KNA17958.1|1.0e-4296.5hypothetical protein SOVF_0752... [more]
gi|902218100|gb|KNA17957.1|2.4e-10100.hypothetical protein SOVF_0752... [more]
gi|902218099|gb|KNA17956.1|1.2e-9100.hypothetical protein SOVF_0752... [more]
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BLAST of Spo26767.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9REQ0_SPIOL7.3e-4396.5Uncharacterized protein OS=Spi... [more]
A0A0K9RGI4_SPIOL1.6e-10100.Uncharacterized protein OS=Spi... [more]
A0A0K9REN4_SPIOL8.2e-10100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo26767.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26767.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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