Spo26763.1 (mRNA)

Overview
NameSpo26763.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionP-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 5
Locationchr2 : 11780825 .. 11782406 (+)
Sequence length150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGGATAACATACCCTTTTCCACGAGCACTGAGAGAGAAAGAACTGAAGATAGTGTATGTTCGATCACATACTGTAAACTTCTTTTTCGTCTTAGCATCTTGTGGTAAATGTGTGGTTTATGTTCTAGAATCATAGTTAAGGCTCTTGTTTTTATCTTTTATATACTGATGTTTGTAGTCACTATTTTTGCCTATTAGCTATAGCATTGGAGCAAGTTTAGGAATATGATAATTTTTCTTTGCCATATATTGATAGACAATGAGCTTTCCTAAGCCTCGCGCTTGACATTTTTTTGTTACATATGAACTTTGAAGCAAATGAAATTTCCATAATGGTTCCATTAGCTATCACCTTATCATATGTTTGTTCTTCCTCTGTTCCATTGTCCTGACTTTCTTATTTCAGGTATTCAGGAATAAGTTGGAGTTTTTTTGCTGCCGGAAAAGTTTCTTCATCGTTTCCCCCACCCGATCTTCCGGAGATTGCATTTGCTGGTAACTGATTTCTTTCCTGCTTTTCTCTGCCTTTTCATATTTCTTAACCTGGCTAGCTAACAAGACTAGGACCACTGTTTTCATTAAGTAGGTCCACTATTTATTCGTTATATTTACTGACATGGCAAATGAATTACTTGATTCTAAAGTAAATCGTATATATCTTTTTAAATTCGTCGAAATAATACGAAATAGGCCTGCTTTGGTTATATATTAGATAGATTAGTTTTTAGAGTTTTAGTATTATAAGGTTCCAATAATACTACATAAAGTGTTGACCTGGAATTTGATGAACCATTAAAACTGAGTCATTGTGAATTTGTGATTCGTGAATACTTTTGCGTACTTGCACGGTTTTGGTTTGGACTAGAATTACAAATTGTTAGTTTGGAGTTTGGAGAATTTGTGATTGAAATTTGCATTAACCATTAAAAATCGGTTTCAAGAGTTCAAATTAGGTATTCTTCTTGTTGCTTCTTCATTCTTGCTAGAGTTTGTAGTAGTTGGTTCCTTATTTCCGTGTACAATTTATCAGAAAAATAAAGAAAAAAAACAAAGTGTAGACACATCTGATATGTCTGCATTGACATTCAATTTTTGTGTGGGTATACTACTTTGTTCGTATATCTTTGCTAGATGACAATAAGAAAGTTACAAAATTTATTTTCTACTAATGATATTTTTACAGAGGAAAAGGAGGATGATTTTTGTTTTGGAGTCGAGCCTAGACTAAATCTAGATCTACCTTTAAAATTTGACGAAGAGTATGAATTGGTGCCAGAAAGGTGTTTACAAGGAGTAGTCCAATCATGACAACATCTTCAAGGATCTTACTGCTTTCACTTCACTTTTGATATTGGTGTTGTTTTGCTACTACTGCAGCGCATGATCTAAGATAGATGCGTGGCTTAATTGCGTTACTTCTGGTGTAGGGGAGACATTTTTGCCTTGTTCATACTTTTCATGTGACATACTTCTCATATTTCTGACATTTAATGAGATAGTATTCTGTCATATTTCATAATCATACCAATTATCATCTGTGTGAACTCGACTAAAATTGATATACACATTTTGCAGA

mRNA sequence

ATGCCATTGGATAACATACCCTTTTCCACGAGCACTGAGAGAGAAAGAACTGAAGATAGTGTATTCAGGAATAAGTTGGAGTTTTTTTGCTGCCGGAAAAGTTTCTTCATCGTTTCCCCCACCCGATCTTCCGGAGATTGCATTTGCTGA

Coding sequence (CDS)

ATGCCATTGGATAACATACCCTTTTCCACGAGCACTGAGAGAGAAAGAACTGAAGATAGTGTATTCAGGAATAAGTTGGAGTTTTTTTGCTGCCGGAAAAGTTTCTTCATCGTTTCCCCCACCCGATCTTCCGGAGATTGCATTTGCTGA

Protein sequence

MPLDNIPFSTSTERERTEDSVFRNKLEFFCCRKSFFIVSPTRSSGDCIC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26763Spo26763gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26763.1Spo26763.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26763.1.exon.1Spo26763.1.exon.1exon
Spo26763.1.exon.2Spo26763.1.exon.2exon
Spo26763.1.exon.3Spo26763.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26763.1.CDS.1Spo26763.1.CDS.1CDS
Spo26763.1.CDS.2Spo26763.1.CDS.2CDS
Spo26763.1.CDS.3Spo26763.1.CDS.3CDS


Homology
[Close]
BLAST of Spo26763.1 vs. NCBI nr
Match: gi|902216983|gb|KNA17575.1| (hypothetical protein SOVF_078110 [Spinacia oleracea])

HSP 1 Score: 57.8 bits (138), Expect = 6.300e-6
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRK 34
           PLDNIPFSTSTERER E+SVFRNKLEFF   K
Sbjct: 250 PLDNIPFSTSTERERIEESVFRNKLEFFAAAK 281
[Close]
BLAST of Spo26763.1 vs. NCBI nr
Match: gi|293336000|ref|NP_001168813.1| (uncharacterized protein LOC100382617 [Zea mays])

HSP 1 Score: 57.4 bits (137), Expect = 8.200e-6
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRK 34
           PLDN+PFSTSTERER EDS FRNKLEFF   K
Sbjct: 330 PLDNVPFSTSTERERIEDSAFRNKLEFFAAAK 361
[Close]
BLAST of Spo26763.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDL4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078110 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.400e-6
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRK 34
           PLDNIPFSTSTERER E+SVFRNKLEFF   K
Sbjct: 250 PLDNIPFSTSTERERIEESVFRNKLEFFAAAK 281
[Close]
BLAST of Spo26763.1 vs. UniProtKB/TrEMBL
Match: A0A0A9F0C3_ARUDO (Uncharacterized protein OS=Arundo donax PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.400e-6
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRK 34
           PLDNIPFSTSTERER E+SVFRNKLEFF   K
Sbjct: 323 PLDNIPFSTSTERERIEESVFRNKLEFFAAAK 354
[Close]
BLAST of Spo26763.1 vs. UniProtKB/TrEMBL
Match: C0P9C9_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.700e-6
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRK 34
           PLDN+PFSTSTERER EDS FRNKLEFF   K
Sbjct: 330 PLDNVPFSTSTERERIEDSAFRNKLEFFAAAK 361
[Close]
BLAST of Spo26763.1 vs. UniProtKB/TrEMBL
Match: M0TJQ3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.500e-6
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFFCCRKSFFIVSP 41
           PLDN+PFSTSTERER E++VFRNKLEFF   K    + P
Sbjct: 324 PLDNVPFSTSTERERIEENVFRNKLEFFAAAKVSTSIPP 362
[Close]
BLAST of Spo26763.1 vs. TAIR (Arabidopsis)
Match: AT5G58370.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 5.500e-8
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 

		  

Query: 2   PLDNIPFSTSTERERTEDSVFRNKLEFF 30
           PLDNIP STSTERER E+SVFRNKLEFF
Sbjct: 247 PLDNIPQSTSTERERIEESVFRNKLEFF 274
The following BLAST results are available for this feature:
BLAST of Spo26763.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902216983|gb|KNA17575.1|6.3e-684.3hypothetical protein SOVF_0781... [more]
gi|293336000|ref|NP_001168813.1|8.2e-681.2uncharacterized protein LOC100... [more]
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BLAST of Spo26763.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9RDL4_SPIOL4.4e-684.3Uncharacterized protein OS=Spi... [more]
A0A0A9F0C3_ARUDO4.4e-684.3Uncharacterized protein OS=Aru... [more]
C0P9C9_MAIZE5.7e-681.2Uncharacterized protein OS=Zea... [more]
M0TJQ3_MUSAM7.5e-666.6Uncharacterized protein OS=Mus... [more]
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BLAST of Spo26763.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26763.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G58370.25.5e-889.2P-loop containing nucleoside t... [more]
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