Spo26644.1 (mRNA) | SpinachBase

Overview


Name	Spo26644.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	cofactor assembly of complex C
Location	SpoScf_00758 : 109655 .. 111118 (-)
Sequence length	1211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATCTTTCTAACAAAAGCAACGTCTTACAACGTCATCATTAGTTATAATTGTTCCATTGTAGAAAAAACACATTTCCACAGCCAAAACTATCTTATCCCCTAAAAATTATCAGAAAAATTGCATCAAAAAATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGGTTAGTAATAGTGAGTCGCTACCCTTTTGTTTTGTAACAAGATATATATAGTGCCTTTTCCATTTGATAATTGATTTAAGTGATGTTGTTTTAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACGTAAGTTGGTTGTTTTTCTGTGGGTATGGACTACATTTGTCTATTGATGAATTGATAGTAAATACTGTTATTGCAGTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCGTAAGTCCTATCGCCACTTTTTTTTTTTGTTTCATTAGTAAGAGTGTAAGACCCTCTTCATCGTTCACATTTTTGTTTCACAGTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAATTATACCCTGCCAAATTCTTATTATTTTAGATACTACCATTGTAAAAATAATACAAGAAAATCTCATCTCATCCCTTGTATGTTTCTGAAGAGCATTTTGTGCGGCAAATACAGTCATTGTTGAGATGTACTGTAAATACTTCTAAATATCTACAGAGCCACATTCATCAAAATTCAAAGTATCATTACTATCAAAATAATGCCACGAGTTGAATGTATTGTTGAAAACCATCACCAAAAATTTATACTAAGCAAAACGCCCA

mRNA sequence

GTAATCTTTCTAACAAAAGCAACGTCTTACAACGTCATCATTAGTTATAATTGTTCCATTGTAGAAAAAACACATTTCCACAGCCAAAACTATCTTATCCCCTAAAAATTATCAGAAAAATTGCATCAAAAAATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAATTATACCCTGCCAAATTCTTATTATTTTAGATACTACCATTGTAAAAATAATACAAGAAAATCTCATCTCATCCCTTGTATGTTTCTGAAGAGCATTTTGTGCGGCAAATACAGTCATTGTTGAGATGTACTGTAAATACTTCTAAATATCTACAGAGCCACATTCATCAAAATTCAAAGTATCATTACTATCAAAATAATGCCACGAGTTGAATGTATTGTTGAAAACCATCACCAAAAATTTATACTAAGCAAAACGCCCA

Coding sequence (CDS)

ATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAA

Protein sequence

MAANLFSPLSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASVEEMSISSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo26644	Spo26644	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo26644.1	Spo26644.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26644.1.utr5p.1	Spo26644.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26644.1.CDS.4	Spo26644.1.CDS.4	CDS
Spo26644.1.CDS.3	Spo26644.1.CDS.3	CDS
Spo26644.1.CDS.2	Spo26644.1.CDS.2	CDS
Spo26644.1.CDS.1	Spo26644.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26644.1.utr3p.1	Spo26644.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26644.1.exon.4	Spo26644.1.exon.4	exon
Spo26644.1.exon.3	Spo26644.1.exon.3	exon
Spo26644.1.exon.2	Spo26644.1.exon.2	exon
Spo26644.1.exon.1	Spo26644.1.exon.1	exon

Homology

[Close]

BLAST of Spo26644.1 vs. NCBI nr
Match: gi|902128248|gb|KNA04171.1| (hypothetical protein SOVF_202060 [Spinacia oleracea])

HSP 1 Score: 516.2 bits (1328), Expect = 3.600e-143
Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 1


		  
Query: 1   MAANLFSPLSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASVEEMSIS 60
           MAANLFSPLSCYCSISNYKTRENYLS  NQNHNQHHPFAANLKAKRVVKMGASVEEMSIS
Sbjct: 1   MAANLFSPLSCYCSISNYKTRENYLS--NQNHNQHHPFAANLKAKRVVKMGASVEEMSIS 60

Query: 61  SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120
           SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK
Sbjct: 61  SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120

Query: 121 KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI 180
           KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI
Sbjct: 121 KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI 180

Query: 181 SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV 240
           SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV
Sbjct: 181 SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV 240

Query: 241 VQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           VQGDDQQVEQMRKELQLNEKGMVYVKGILER
Sbjct: 241 VQGDDQQVEQMRKELQLNEKGMVYVKGILER 269

[Close]

BLAST of Spo26644.1 vs. NCBI nr
Match: gi|731343453|ref|XP_010682900.1| (PREDICTED: uncharacterized protein LOC104897660 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 378.6 bits (971), Expect = 8.900e-102
Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1


		  
Query: 1   MAANLFSP---LSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASV-EE 60
           MAA L SP   LS + SISNYKTRE     H+             K KR V +  SV E+
Sbjct: 1   MAAILVSPSPPLSSFSSISNYKTREF----HHLGTTTTTTTTMISKPKRAVLVRLSVSEQ 60

Query: 61  MSISSELATDLANHLHENPSSVILMAES--VGYSVASYYTSLGLFVISVPGLWSLIKRSV 120
           + +SS+LA++LA++LHENPSS+ LMAE+  VGYSVASYYTSLGLFVISVPGLWSLIKRSV
Sbjct: 61  LLLSSQLASELAHNLHENPSSLFLMAETETVGYSVASYYTSLGLFVISVPGLWSLIKRSV 120

Query: 121 KSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALL 180
           KSKIV+KT+VQGDEIKKAPNQVAGE+LS+FTRNNF V+D+GETITFEG M+P+RGQAALL
Sbjct: 121 KSKIVQKTFVQGDEIKKAPNQVAGEILSFFTRNNFVVSDKGETITFEGMMVPNRGQAALL 180

Query: 181 TFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENG 240
            FCTCISLASVALVLTITFPDVGNNWF+I ALSPL+GAYYWK ATRKEQIKIKM+V ENG
Sbjct: 181 IFCTCISLASVALVLTITFPDVGNNWFWITALSPLSGAYYWKLATRKEQIKIKMIVGENG 240

Query: 241 TLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
            LS+IVVQGDDQQVEQMRKELQLNEKGMVYVKGILER
Sbjct: 241 ALSDIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 273

[Close]

BLAST of Spo26644.1 vs. NCBI nr
Match: gi|747098274|ref|XP_011097139.1| (PREDICTED: uncharacterized protein LOC105176129 [Sesamum indicum])

HSP 1 Score: 338.6 bits (867), Expect = 1.000e-89
Identity = 179/272 (65.81%), Postives = 218/272 (80.15%), Query Frame = 1


		  
Query: 5   LFSPLSCYCSISNYKTRENYLSNHNQNHNQHHPFAAN----LKAKR-VVKMGASVEEMSI 64
           L SP+S  C+ S             Q+ +  HP+       ++ +R VV++ +S+++   
Sbjct: 6   LISPISHRCTFST------------QDRHHIHPWPGRGQMLMRRRRLVVQLSSSLDDALS 65

Query: 65  SSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIV 124
           S+ +A  L  HLH  P S+ L+A+S GYSVASYYTSLGLFVISVPGLWSLIKRSVKSK+V
Sbjct: 66  STPIA--LMEHLHHQPESLFLLADSAGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKVV 125

Query: 125 KKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTC 184
           +KT++   E KKAPNQVAGE+LS+FTRNNFTV++RGETITFEG M+P+RGQAALLTFCTC
Sbjct: 126 QKTFIGEGEGKKAPNQVAGEILSFFTRNNFTVSERGETITFEGMMIPNRGQAALLTFCTC 185

Query: 185 ISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEI 244
           ISLASVALVLTITFPD+GNNWF++  LSPLAGAYYW +A+RKEQIK+KM V ++GTLSEI
Sbjct: 186 ISLASVALVLTITFPDIGNNWFWLTVLSPLAGAYYWTKASRKEQIKVKMTVADDGTLSEI 245

Query: 245 VVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           +VQGDDQQVEQMRKELQL+EKGMVYVKGI ER
Sbjct: 246 IVQGDDQQVEQMRKELQLSEKGMVYVKGIFER 263

[Close]

BLAST of Spo26644.1 vs. NCBI nr
Match: gi|802564618|ref|XP_012067360.1| (PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas])

HSP 1 Score: 335.5 bits (859), Expect = 8.700e-89
Identity = 169/217 (77.88%), Postives = 193/217 (88.94%), Query Frame = 1


		  
Query: 55  EEMSISSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSV 114
           E +S SS    +  +H ++N +S+ L+AES GYS+ASYYTSLGLFVISVPGLWSLIKRSV
Sbjct: 58  EHVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSV 117

Query: 115 KSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALL 174
           KSKIV+KT++   E KKAPNQVAGE+LS+FTRNNF V DRGETITFEG M+PSRGQAALL
Sbjct: 118 KSKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALL 177

Query: 175 TFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENG 234
           TFCTCISLASVALVLTITFPD GNNWF+I  LSPLAGAYYWK+A+RKEQIK+KM+V E+G
Sbjct: 178 TFCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDG 237

Query: 235 TLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           TLSEI+VQGDDQQVE+MRKELQL+EKGMVYVKGI ER
Sbjct: 238 TLSEIIVQGDDQQVEEMRKELQLSEKGMVYVKGIFER 274

[Close]

BLAST of Spo26644.1 vs. NCBI nr
Match: gi|590647922|ref|XP_007032034.1| (Cofactor assembly of complex C isoform 1 [Theobroma cacao])

HSP 1 Score: 332.8 bits (852), Expect = 5.600e-88
Identity = 183/278 (65.83%), Postives = 219/278 (78.78%), Query Frame = 1


		  
Query: 1   MAANLFSPLSCYCSISNYKTRENYLSNHNQNH-NQHHPFAA-----NLKAKRVVKMGASV 60
           MA  + SP     S  +  ++    S+ N +H +QH P+       +L+  R +    S+
Sbjct: 1   MATRIISPHPQALSALSLPSK---FSSRNGSHLHQHQPWLGRAPPTHLRPGRQLLARLSL 60

Query: 61  EEMSISSELA-TDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRS 120
           ++  +SS  A +D   + H+NP S+ L+AES GYS+ASYYTSLGLFVISVPGLWSLIKRS
Sbjct: 61  QQTLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSLGLFVISVPGLWSLIKRS 120

Query: 121 VKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAAL 180
           VKSKIV+KT++   E KKAPNQVAGE+LS+FTRNNF VTDRGETITFEG M+PSRGQAAL
Sbjct: 121 VKSKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGETITFEGMMVPSRGQAAL 180

Query: 181 LTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVREN 240
           LTFCTCISLASVALVLTIT PDVGNNWF+I  LSP AGAYYWKRA+RKEQIK+K++V  +
Sbjct: 181 LTFCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWKRASRKEQIKVKVLVAND 240

Query: 241 GTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           GTLSEIVVQGDDQQV+QMRKEL+L+EKGMVYVKGI ER
Sbjct: 241 GTLSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

[Close]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCC7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202060 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.500e-143
Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 1


		  
Query: 1   MAANLFSPLSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASVEEMSIS 60
           MAANLFSPLSCYCSISNYKTRENYLS  NQNHNQHHPFAANLKAKRVVKMGASVEEMSIS
Sbjct: 1   MAANLFSPLSCYCSISNYKTRENYLS--NQNHNQHHPFAANLKAKRVVKMGASVEEMSIS 60

Query: 61  SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120
           SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK
Sbjct: 61  SELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVK 120

Query: 121 KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI 180
           KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI
Sbjct: 121 KTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCI 180

Query: 181 SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV 240
           SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV
Sbjct: 181 SLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIV 240

Query: 241 VQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           VQGDDQQVEQMRKELQLNEKGMVYVKGILER
Sbjct: 241 VQGDDQQVEQMRKELQLNEKGMVYVKGILER 269

[Close]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C274_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g151770 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 6.200e-102
Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1


		  
Query: 1   MAANLFSP---LSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASV-EE 60
           MAA L SP   LS + SISNYKTRE     H+             K KR V +  SV E+
Sbjct: 1   MAAILVSPSPPLSSFSSISNYKTREF----HHLGTTTTTTTTMISKPKRAVLVRLSVSEQ 60

Query: 61  MSISSELATDLANHLHENPSSVILMAES--VGYSVASYYTSLGLFVISVPGLWSLIKRSV 120
           + +SS+LA++LA++LHENPSS+ LMAE+  VGYSVASYYTSLGLFVISVPGLWSLIKRSV
Sbjct: 61  LLLSSQLASELAHNLHENPSSLFLMAETETVGYSVASYYTSLGLFVISVPGLWSLIKRSV 120

Query: 121 KSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALL 180
           KSKIV+KT+VQGDEIKKAPNQVAGE+LS+FTRNNF V+D+GETITFEG M+P+RGQAALL
Sbjct: 121 KSKIVQKTFVQGDEIKKAPNQVAGEILSFFTRNNFVVSDKGETITFEGMMVPNRGQAALL 180

Query: 181 TFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENG 240
            FCTCISLASVALVLTITFPDVGNNWF+I ALSPL+GAYYWK ATRKEQIKIKM+V ENG
Sbjct: 181 IFCTCISLASVALVLTITFPDVGNNWFWITALSPLSGAYYWKLATRKEQIKIKMIVGENG 240

Query: 241 TLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
            LS+IVVQGDDQQVEQMRKELQLNEKGMVYVKGILER
Sbjct: 241 ALSDIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 273

[Close]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 6.000e-89
Identity = 169/217 (77.88%), Postives = 193/217 (88.94%), Query Frame = 1


		  
Query: 55  EEMSISSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSV 114
           E +S SS    +  +H ++N +S+ L+AES GYS+ASYYTSLGLFVISVPGLWSLIKRSV
Sbjct: 58  EHVSSSSSALMEQLHHYNQNQNSIFLVAESAGYSLASYYTSLGLFVISVPGLWSLIKRSV 117

Query: 115 KSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALL 174
           KSKIV+KT++   E KKAPNQVAGE+LS+FTRNNF V DRGETITFEG M+PSRGQAALL
Sbjct: 118 KSKIVQKTFIGEGEGKKAPNQVAGEILSFFTRNNFAVADRGETITFEGMMVPSRGQAALL 177

Query: 175 TFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENG 234
           TFCTCISLASVALVLTITFPD GNNWF+I  LSPLAGAYYWK+A+RKEQIK+KM+V E+G
Sbjct: 178 TFCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKQASRKEQIKVKMIVAEDG 237

Query: 235 TLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           TLSEI+VQGDDQQVE+MRKELQL+EKGMVYVKGI ER
Sbjct: 238 TLSEIIVQGDDQQVEEMRKELQLSEKGMVYVKGIFER 274

[Close]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A061ED97_THECC (Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.900e-88
Identity = 183/278 (65.83%), Postives = 219/278 (78.78%), Query Frame = 1


		  
Query: 1   MAANLFSPLSCYCSISNYKTRENYLSNHNQNH-NQHHPFAA-----NLKAKRVVKMGASV 60
           MA  + SP     S  +  ++    S+ N +H +QH P+       +L+  R +    S+
Sbjct: 1   MATRIISPHPQALSALSLPSK---FSSRNGSHLHQHQPWLGRAPPTHLRPGRQLLARLSL 60

Query: 61  EEMSISSELA-TDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRS 120
           ++  +SS  A +D   + H+NP S+ L+AES GYS+ASYYTSLGLFVISVPGLWSLIKRS
Sbjct: 61  QQTLLSSSSALSDHLQNYHQNPDSMYLLAESAGYSLASYYTSLGLFVISVPGLWSLIKRS 120

Query: 121 VKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAAL 180
           VKSKIV+KT++   E KKAPNQVAGE+LS+FTRNNF VTDRGETITFEG M+PSRGQAAL
Sbjct: 121 VKSKIVQKTFIGEGEEKKAPNQVAGEILSFFTRNNFVVTDRGETITFEGMMVPSRGQAAL 180

Query: 181 LTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVREN 240
           LTFCTCISLASVALVLTIT PDVGNNWF+I  LSP AGAYYWKRA+RKEQIK+K++V  +
Sbjct: 181 LTFCTCISLASVALVLTITVPDVGNNWFWITVLSPSAGAYYWKRASRKEQIKVKVLVAND 240

Query: 241 GTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
           GTLSEIVVQGDDQQV+QMRKEL+L+EKGMVYVKGI ER
Sbjct: 241 GTLSEIVVQGDDQQVDQMRKELKLSEKGMVYVKGIFER 275

[Close]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: D7SVG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.300e-87
Identity = 181/277 (65.34%), Postives = 213/277 (76.90%), Query Frame = 1


		  
Query: 1   MAANLFS---PLSCYCSISNYKTRENYLSNHNQNHNQHHPFAANL----KAKRVVKMGAS 60
           MAA L S   PLS    +S ++T +  L        QH P+        + KR+V   + 
Sbjct: 1   MAAKLLSHSHPLSSLSPLSKFRTSDFTL--------QHQPWLRRTPTPTRPKRLVVQVSL 60

Query: 61  VEEMSISSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRS 120
            + +S S+ L   L  H H+ P S+  +AES GYS+ASYYTSLGLFVISVPGLWSLIKRS
Sbjct: 61  HDPISSSTALLHHL--HTHQTPYSLFELAESTGYSLASYYTSLGLFVISVPGLWSLIKRS 120

Query: 121 VKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAAL 180
           VKSKIVKKT++   E K  PN +AGE+LS+F+RNNF V+DRGETITFEG M+PSRGQAAL
Sbjct: 121 VKSKIVKKTFIGEGEGKNKPNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAAL 180

Query: 181 LTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVREN 240
           LTFCTCISLASV LVLTITFPDVGNNWF++  LSPLAGAYYWKRA+RKEQIK+KM+V ++
Sbjct: 181 LTFCTCISLASVGLVLTITFPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADD 240

Query: 241 GTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILE 271
           GTLSEI+VQGDDQQVEQMRKELQL+EKGMVYVKGI E
Sbjct: 241 GTLSEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFE 267

[Close]

BLAST of Spo26644.1 vs. ExPASy Swiss-Prot
Match: CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana GN=CCB1 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.200e-84
Identity = 161/219 (73.52%), Postives = 185/219 (84.47%), Query Frame = 1


		  
Query: 54  VEEMSISSELATDLANHLHENPSSVILMAESVG-YSVASYYTSLGLFVISVPGLWSLIKR 113
           VE +S+ S  A  +     +NP+S++LM E+ G YS+ASYYTSLGLFVISVPGLWSLIKR
Sbjct: 48  VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKR 107

Query: 114 SVKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAA 173
           SVKSKIV+KT+V  D +KK P QVAGE+LS+FTR NF +TDRGETITFEG M+PSRGQAA
Sbjct: 108 SVKSKIVRKTFVVND-VKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAA 167

Query: 174 LLTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRE 233
           LLTFCTCISLASV LVLTIT PD GNNWF+II LSPLAG YYWK+A+RKE+IK+KM+V  
Sbjct: 168 LLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGS 227

Query: 234 NGTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
            G L EIVVQGDD QVE+MRKELQLNEKGMVYVKG+ ER
Sbjct: 228 KGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

[Close]

BLAST of Spo26644.1 vs. TAIR (Arabidopsis)
Match: AT3G26710.1 (cofactor assembly of complex C)

HSP 1 Score: 313.5 bits (802), Expect = 1.200e-85
Identity = 161/219 (73.52%), Postives = 185/219 (84.47%), Query Frame = 1


		  
Query: 54  VEEMSISSELATDLANHLHENPSSVILMAESVG-YSVASYYTSLGLFVISVPGLWSLIKR 113
           VE +S+ S  A  +     +NP+S++LM E+ G YS+ASYYTSLGLFVISVPGLWSLIKR
Sbjct: 48  VEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKR 107

Query: 114 SVKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAA 173
           SVKSKIV+KT+V  D +KK P QVAGE+LS+FTR NF +TDRGETITFEG M+PSRGQAA
Sbjct: 108 SVKSKIVRKTFVVND-VKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAA 167

Query: 174 LLTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRE 233
           LLTFCTCISLASV LVLTIT PD GNNWF+II LSPLAG YYWK+A+RKE+IK+KM+V  
Sbjct: 168 LLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGS 227

Query: 234 NGTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER 272
            G L EIVVQGDD QVE+MRKELQLNEKGMVYVKG+ ER
Sbjct: 228 KGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of Spo26644.1 vs. NCBI nr
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
BLAST of Spo26644.1 vs. ExPASy Swiss-Prot
BLAST of Spo26644.1 vs. TAIR (Arabidopsis)

BLAST of Spo26644.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902128248\|gb\|KNA04171.1\|	3.6e-143	99.2	hypothetical protein SOVF_2020...	[more]
gi\|731343453\|ref\|XP_010682900.1\|	8.9e-102	75.8	PREDICTED: uncharacterized pro...	[more]
gi\|747098274\|ref\|XP_011097139.1\|	1.0e-89	65.8	PREDICTED: uncharacterized pro...	[more]
gi\|802564618\|ref\|XP_012067360.1\|	8.7e-89	77.8	PREDICTED: uncharacterized pro...	[more]
gi\|590647922\|ref\|XP_007032034.1\|	5.6e-88	65.8	Cofactor assembly of complex C...	[more]

BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QCC7_SPIOL	2.5e-143	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0J8C274_BETVU	6.2e-102	75.8	Uncharacterized protein OS=Bet...	[more]
A0A067L3R0_JATCU	6.0e-89	77.8	Uncharacterized protein OS=Jat...	[more]
A0A061ED97_THECC	3.9e-88	65.8	Cofactor assembly of complex C...	[more]
D7SVG9_VITVI	3.3e-87	65.3	Putative uncharacterized prote...	[more]

BLAST of Spo26644.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
CCB1_ARATH	2.2e-84	73.5	Protein COFACTOR ASSEMBLY OF C...	[more]

BLAST of Spo26644.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G26710.1	1.2e-85	73.5	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	DUF3529	coord: 91..257 score: 1.2
None	No IPR available	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 1..271 score: 6.0E
None	No IPR available	PANTHER	PTHR35302:SF1	SUBFAMILY NOT NAMED	coord: 1..271 score: 6.0E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast