Spo26608.1 (mRNA) | SpinachBase

Overview


Name	Spo26608.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	rRNA-processing protein PIN domain protein
Location	SpoScf_01236 : 16150 .. 29226 (-)
Sequence length	1400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTTTTCCTAAAACCTCGACTCATTCTCTTTCCCTCTTCCTCCTAGTCTCCAAAAATGAGGTTCAAGAAGCAGAAGCGTCACAGAAAAACCGTCAGAATCTACACTGCTTGTTTTGGATTTCGAGAACCTTTCAAAGTACTCTGCGATGGCACTTTTGTTCATCACCTTGTTGTTAATAATCTCTCTCCTGAAAGTTCCGTCGAAAATACTCTCGGCGCTTCTGTTCAGCTCTTCACTACCCAGTAAAATTTACTCCAATTTGTTTGAGTTTTATTACAATTTTCAGTGTTTTTGATTGATTTGTTGTACTAATTTTAATGGGTATTGATTTGTTGTTGGTTAGATGTGTTATTGAAGAGTTAAAGTCTCTTGGAAGTTCACATGTTGAATCGTTTCTTGCTGCTCGGAAAGATTACAAGCTTGCTAGGTTGGGTTTTTATTGTCCTTTTTTGCAGTTTAATACAGCTTCGAATTTGTTTAAATAGTTTCTGAATATTCTTATTTTGATGGGTTTTGTTTAAGAAGTATGAATTGATGTTTAATTGTGTCAATTGGGTTTGCTTTGAACTTATGGTTTCCTAGAAAATTGTTGTGGTGAATGTAATTTGTAGTGTAGTGATACTATAAGGATACGTTTCCCAACTGGAATGTCCCTTGCTCGATTTTTGAGGTTATTCGGTTTGAATTCCCCTGGTTTTTATCGAGGTGCTTCCCTTCCCAGTTCTTTGTGAAAATTCCTTTACTTGTGTACAAAAAGATATGCAAAGAAAGGGGATCTATGGAAGGAAGATAAGAGTGGATCTGCACCTGGGTTTCTGCTGAAAGTTTCAACATTTCGGGTTATATTTTGTTCAATCATGTATTTTTTATGTGGAGGTGCTTCCCTTCCCTGACCTTTTGGGAATAATCCTTAATTTGTGTCCAAATAGATATGCAAACACGCGAAGAGGGTTGTGGGAAGGAATTGCTAGAGTAGAGGTGCTCCGTGGTTTCTGTTGAAACCTTCTGTTGAAACTTTTGTGGTTACAAAATTATCTTGGCGCATGGGTTCCTTCTTTAATGTCCGGGATCAGCTGTATTCAATTGCTCATTTTTCTTTGTGTTTTGAAGAAATTGACCTATATTCTTTGAATTTATGACTATTGCCTTTGTTTAAAATATCAAGACACTAACTTTACTTTGTTGCTCCAGAGAGTTCGCTATTCTTATTTAAGCTATCAAAACTTCTTCATCAGTTATCTTTCCACCTCCTTTCATCCTTTTGCTGTTGATGGCAAACTTTGGTACTGAATTCTCCGTTTCTGAAACTTTTTTGAACTTATCTGAACTTAATTTTTAAAAAGAAGTAAGATAAGTTAAGGAGCTCAGATCTTAGTTTTATGAATAAAAAGCTGATGCCAGAGGCCTCCTATAGTCTTGTATTCATTGTAGGTTGATTTTTCCAGGAAGGACGTTGTATGGTTTATTAATGCTCTTGGTAGAAGTTGTTATCTGACTAGGCAGTTAAGGATACTATTGAGATCTTGAAAAACTTCTTTAGTGGAATACGTATGGTATCTAAGTATGTGTAGCCTTATCTGATTTATGTGCTTTATGAGACCTATTGTCACATACCGAATGTTTTCACCGGATCCGTGCGGCGCATTCCTACCTTTTGACGACAAGGGTGCAAGCCTTATGCGGAATGAGTGTCTCAGAGCTCGTTGGGCACGAGAAAGTGTTTGATTCAGAATGGAGACTAGACTAGACGCTTGTGTGCGCAACGGGCACAAGCGGGGCTGACGACAAGAATGTATATGTTTTGGGAGACTTTGTTGTGTCTGGGGAGCTTTGCGCTAGCATAATATCTACAAAAGTATAAAACAACGCAAATAACAAAACAAGACAACTTTTGTGGGGTAGGGAGTATTGGTGCATACTCCCTAAAGAGGTTTATATTGAATAAGCTAAAAAGTACCAGTGAACACTGGTAACGTAATGATTCTATCTAAAACATAGAAAACTATTAGAAAAGTCCTAGAAAGCCTTAGATATCAAAGTAAAGGAAGGTTGAATTCTAACACCTACGTTGGGTCAGTTCAAACGTTGAATTCTAACACCTACGTTGGGTCAGTTCAAACGTTGAATTCTAACACCTACGTCATGGGGACTTTTGACTGCTAAAGAATTTGAATGGTTGCATGGATATTTTTTTATACCACTGTGACGGATGTTGTTTGCAGAAGTACATTGATCAAAACAATGAATTTTCATGATATGTTTATTACTTGCCTTTGTGGTAGATGTGAGCATGAAGAGAAGGAAAGTGCTTTGAATTGCATAATGAAGATTGTTGTTTGCAGAAGTACATTGATCAAAACAATGAATTTTCATGATATGTTTATTACTTTCCTTTGTGGTAGATGTGAGCATGAAGAGAAGGAAAGTGCTTTGAATTGCATAATGAAGATTATTGGAGAAAAAAATCCCGAACACTTCTTTGTTGCTACTCAAGACATTGACTTACGAAAGAACTGTCGGAAGGTAACTCTACTTGTTAATGCTCTTCTCTGTTATTGTTTATTATTGTCTGCTGGGTACTTGTGAATACAACGTTTATTTATATTTTTTTTATCAACTGTTACCATGTTGCAATTTTATCTTTAGATGCCGATATCACCATAATGACATTGTGAGACATCATTGTTCTTGTCCAGGTAGAGTCACATTACGACCAACCTAAATTTTTCAGTTATTTCTGAACCTTTTAAAGTTTTCTTTACTTGGATATGCTTTCTTGAAGCAGCAAGTGTTCTATTCCTTACCAAGTTATAATAAATTATTTTGATTTTTAGAATTAGCAATTTTCATTTTTGGATCTTGTTACCTGGTTTGTGGTGCGCTTTAATAGGCGGAACACAATTCACTACTTACTTATGTTAAATTAGGACAAAGTTTTCTACCGTTCCAATACGCAATTCGGGGGGGCACCACAGTCGAGACTCCAGAGTATTAGGTACTAAGTAACACTAATTTGTTGTGAATGGAGCAAATAGAAAAAAATAAAAGACACAAAATTTCTGCCTAAATTAAACTGTACATTGGTTATTTTCCCCCTTTGCTTCGTATTCTTGTTAATAATACGAATCACATAACTTGAGTCTCCAAAATATGTTTTGAATCTTGCTTACTAGAGTGTATATTTGTGTGCATAGAACATTATTAAAAATTGATACTGTTTATAATGGACTTCAAATAGCAGACTCTAGCTTGTTATAGATAGTTAATTCCAGTTAGAACTTAAACACCATCTGTTCTAATTGTGCTTCCTCAATGGTTTTGCGGGAAACAACTTTTTAACTAGAGAGAGAGGAATCATCAATGGTTAAGGGCATGAGTCATCAATGATTAAGGGCGTGTGTCACTCTTGTAAATAGCTAGCTTTCGAAGTACTATAGCATTTATTCCGTTGACTTAGGCAAAACACTATTAATATCAAAACATTCTATACCACAAACTAGTGGTAAGTTGATGCTTGCTTTTAGAATTTAGGTTAGTGTTTTTCAAAAGCTACCTTAAGTTCAAATTAGCTTCTGTGGTAGTGTTTGCATTCCGAAATTAACTTTTGGGAAAGTATTTTTTACTACTCCCTTCATTCCAATAAGATTGTCCCATATTCCTTAAATGGATGTCCCATTGGCTTTGCTCCATTATCTTTATTGTATATTTTCCCCACTTAATAACGCATGTGCAAGTGGTGCAACCACAAAAAGAAAAAATACGAACCCACATGCTTTCATATGAACCAACTTTTAAGAAAGGGATGTGGAGTAATCTTAGTGGGACGGAGGGAGTACATAATATACTTCTCTAATAGTAAGTTGTGCTAAATATTAACATTAAACACTACTTAGGCAGTCGACATCAAAACTAGAGAAACATCTAACTAGTACCGTAGTTGAACAATTGATAGCTACTAGACCAACTACTTTTCTCAAAGAAACCTAAAGTCTATAGTTAGTTGAAAACGTCTTTTCCTTTTCCCTTTTTGTACTTATTTTCCTACGCTCTTATCAAGTGTTTGTTTTAAGCTTATATTTTCATCCCTACTCCACCTTATTTGGCCCCATATTGTCGAGTGAAATCGTGCAAGTATTAGTTGTCCACCATTTATGATGGGTGAAGTATTCGTATGTGGAGCATTGTTTTCCCATATTTAGTTTGATGGATTATGGGAGGGAAATTTACCGATGAGATAAGTACAAGTGAAGTAGAAGATGGTCGTCCCGTTGTCGTCCCTTTGCGTACGTCCGACCCCCCTTACCCCGCTTCTTGCGAGAGCCTATTTGAGGCAATGGGGTAATGATAATGATAATGATAAGTACAAGTGAAAATGAAAAAAAGATATCCATGTTTTAGGTTTAACCATTATTCAGTAAAAGTGCTTTAAGTGGGGGGAAATGATGTGGAAGAGAGAGAAAGTGGGATGAACACCTATGTTGAGGTTCTATTACTCTCATGCCCTTAGTAAACTTTAGGTGAAGAGAAGAAAGAGAAGTTAGGGCATGGATATTGTTGAACCGAAAGAAGGTTTCATCTTGTTTCTTTTTTCTCTCTTTTCCATGTCAAATCCCTCCCCTTTAAACAAATTAAATTTATTTTAATGAATTGATGAACCCCAAACTTTAATAAACAATTCCTTTACTATACCACTACATGGATTATATATTATAATTCATGTAAGCCGAATCCTCAATACTCCTAGTTGAATAAGTAACTTAAATTTGCCTGGAAGATAGTAAAAATTTGCACCCCTTCCACATTGTCTTATTAGAGCATCCATATTCATAATCTAAAATAATGTTAAAAAATTAATTTTAATAATCTAACCTTTAGGTGTTCTTAAAACAGTCACACCTTTTGATTATTTGAGTATAATCCTTCCGTTAGGGGTTATCTGTGAAAATGACCCCCTTCTGACCGTCAACCTAAATACTAGGTAAATCTTTTTTATTTTTGTTTTAAATTTTTTATCTGTCCTTGCATCATCACAACCTACACCGCTACACGGGTAACTCCATACACCACCCTCAACTACGACATAAATTTTTGGCGAGGCTACGTTGGTGGTGGCCGGCGCTAGACCCTCTAGTTGTCGTCTTTGGTAAACCGTTCAGTAGAGTCTTCTCTTCTCTCTTCGGCTTGTGTTTCTGGTAAGTCTTCTGTTAAGATCTTCTTTTCTCTTTCTTGCTTCAGTCACCTTTTAAAAGTTGTACTTCAATTTTGTTTTTCCACTTATCAACTTTCTTCATACGGGTGGTACTCCCACCTATTTCCTCTAACAATCCCGAAAATAATTAGCTTCAAGATTGGGCCCGTGAAGTTGCACGGACTTGTTGTCGCGCGGTCCAGGCAATGTCTCCTGCTGGACAACTTCTCTTAAAAATATCGTAACTTTCATTCTATTGTCGAAATCATGCGTGTGGCCACTTGTTAGAAAGATATTGAGTTAAACTATCACCTCCAATTTGAATCACCTTCATACGTTGAGCAGAAATAAAGTTATGGTCATTTGAAGTTGATATTTGTGAAAGCGCTCTCCCAAATTCGCCCAAGTAAGTTCATCCATTCCGAGATACTTCTCAATGCTTTGTAAGACCTCTTTGAACGTACCTACAAGGTCAAACAAGTAGTAGTAGTACCCATGTCCAAGAAATATGACAACAGAAACTAAAATCACTAAATAAGTACAAGCTCTCTAGTGAAACTAAGCAAAACAAAGCTATTAAGTGTGAAGTGAGGATAAAATGGAGTAAAAGCCAAGGGAGTTAGGGGGCTAAAAAGGGGTATATAAACCACTTATCACAGTGAACATTAAATCTAACATAGATGTTAAGTTCATCCATCCCGAGATACTTCTCAATGCTTTGTAAGACCTCTTTGAACGTACCTACAAGGTCAAACAAGTAGTAGTAGTAGTAGTACCCATGTCCAAGAAATATGGCAACAGAAACCAAAATCACTAAATAAGTACAAGCTCTCTAGTGAAACTAAGCAAAACAAAGCTATAAAGTGTAAAGCGAGGATAAAATGGAGTAAAAGCCAAGGGAATTAGGGGGCTAAAAAGGGGTATATAAACCACTTATCATAGTGAACATTAAATCTAACATAAATGTTAAAAATGTGAAATTATGCTGTTGAACTTCTTAAAAAAAGGATACAAATGGTGTCCCCACCACTTAGTTTTAAAAAGCGCGCCTAAGGCGAGGGCGAGGGCGAGTGGAAGAACAGCTGGAAACGCTCTATCTTGAGTAGGCAAAGCGATATACAGGAGGGACACGCATTTTTGCTGCTGTGGAGGCACGCTTCTATGTAGGCATGGGCGCAGTTTTAGGAAAAACAACTTTTTTAAATTCAAAAAAGAACACGTGAGCATCACGTGACCTTTTTTTGGCTGTTTTTTACCTAGTGTACCCTGTCAAACTAGTAGTTTTAGGGGGGAGAAAAAATTAAGCCCCGTATTTTGGGGATTGTGGAGGAAACTCTAGCCAAAAATTATTCCTGCCTACTTGATGCCGGATTTCTCTAGCCGTCCAGCCACCTCCTTGCCGGAAATTTTCCAATCTTCAGGTACGGTCTTTTGATTTTCCATCTTCCTTTTCGATTTCTCAAAAAAGAATTCATCTTTTTCATGTCTCCTTTCTTTTATTTCTCCATCTTTTTATGTTCTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTCCAGAAAATCAGATCAGTACCACCTCCCAGAACTGCACCGCTCTGATACCAAGTGTGAAGAACTGAGATTTTGGTGCAGAAAATTAATGGTAGAAATATGCAATAATCTAGTTGATAGATGAATGGACACAAAATAGGATACGAAAGTAGTGACTTGAGGCCACCAATCTCCAAGTTTAGTGACTTGAGTCACCACTCTCCAAAGCCTAAGCTTTACCAAATTCCCCACATACCTCCCATAACCTAATGTGCCACTATTTATAACCCTTCTACTAGACCTACCTAATTTGTCTTCTACCTAATATTACTTATTACCTATTATGCCCTCCCCTTGCACTTAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCGATTTCTCCCTCTTCTGTCATCTTTTTCCGATTTTTTTATTTCTTTTTTCAGAAAAATACAACTCTGTATTTATTTTTTCTAAATTCCAAACTCCGAAATTTCAAGAATAAATTAGTAAAAAAAAAATAACTTTCAAGAATAAATTATTTTCTCTGTATTTTTCCCCCTGTTCAGATCTCTGTTATTTTTTGTTTCCTTTCAGTTCTGCTTTTTTTCTTTCAATTTTACTTATTTGTCTAAGGGCTCTTTTAGTTATATAGCTTTTATTTTTATATTTCAGGGTTTATAGGACATTGTTTGTTAATTGAGATGGCTACCAATGAGGGGTCAAGCACGCCGTCCTTAGGATCAATGGATTATGCGTTCCTTTGTTAATTTATGCATTTATAATATGAGTATTAGGTAGTTTTGAGTATAAAATATGTTCTAGAAATGTTTAAAGGTTTTTGGCACTTAAGGTGCGCGTTGCCTACGAAAGACGTGCGCTTTCGCCTTGCGCCTAGGCTCCGAGACCCTTGTGTGCTTCGCGCTTAAGGCCCACCATCATCTTTCTCCACTAATTTGCCTCTTCCAAAATAGTTCTGATGCTCCTTATCTTCCTCGTGCTACTTCAACTTTAACAACATGCCCCTCTCGTCTACTTACTTCATTCTTGTCATCTCAACCTTCTTTCTATCAAGCTTGTCTCCCTCTTGTTTGTCCTATTCTTATTCTTCTATTTCTTCTTCACACACTTTTACTGTTCTTTCCTTGGACTTTAGTTTCCAAGGGTCCAAGAGCGTGGTGATATGTTACAGCCGCTGAATTTTTATATCTGAACTTCACTGCCCAATCTGATCATGAAAGAATAAAATCTGTTCCTCGTTTAGAATTTTTATTTTTAGGTTGGATAAGGGAGGACTGTCTGTCTTAGAGGATACACTGGGTTCAAATTTAACAGTTGTTACAGATGAAGAAAATTTAGGGGAATTACAAATTTACAATATATGGTAAGAATCTCTCATTTGGGTTAGTTGTTCCTCCCCCTATTTGTTGTGGTTCACTTCTCAGTGAGTGTAAGATTTGACCCGGAATCTGCATACACAATTTATAAAGTAGATTTCATACGAGAGGGCTTGGTGATGTCTGATGAAGGTAATACAGTGATGTGGAAGATGAAGGTCTTTTAACGGGGGTGAGAGTTATAGTAATACTTTGTTTCTGCATATTCTTCGTTGTTCCTTTAAATTACATTTTGGATACATATGAAGTCTATTGTTCGTACTTGGTTCAGATTTGAGTATTATATTTGATACATGGACTGTCTAAGTTTGCGACTTTGATTTTTAATAGCTAAAAGTATGTGTTGATGCTAAGGATGCAAATATACTTGGTTCCCGTTGAAAAGAATGTAAGTAACATACCTTAGTTTTTCTTGGCGTATGTTCAAACTTCCAAGTGTGTCCTCGAAGACCAGAAAATGCCAATGTAGGACTGTAGGAGACTCAAATCTAGGCAGAGGAATGACTGAATGCACTGGTTTGGCAGGATTCTTGGTCGATGTTTAAGAGAAGTCCTCGTACCAAAACATAAAAGGGTAAAGTCTTGAAACCAAACAAAGGGAAGAAAAGGGAGCTCCTTGCATACTTAGTTCCCACTTCGCAGTAGTTATGTCACGACAGGGAAGAATTATCTTCCCTATTTCTCTCTATTAATGGGGGAAGAAGCTGGTCATATATGTGTTATCTGTTTCTAGAATTAGCTTTTCATGTTCACATATTGCCTGCTAGACCTGAGCAAAATGTGTGGTTCTCAAGATAATTAATCTGTGATATCTTTTGATAAAGTAGAATTTCTTTGTTTAAGTGTGATTCTCTTATATTATTGCCTAAATTCTTGTTCTCCAATGATTGTGCTTTGCAATGCTACAGTGTGTTTGCCTAAATTCCTGTTCTCCCATGACTGTTCTTTGCAATGTTACATTGTGTTTTGGTAGGGAAAATCTGGAGGGAAAGTGAGGGATTCATTATCCCTTGTTTGCAATTGACATGAAGGAAGGGAAGGGGAGGGAATTGAAAATATTTATTTTTTTACCCTTCTAATATCCAAATCATTCCAATGTTGGAAAGATTTGGATGGAAAATGCAAGCTCACTCCTTCCCTCCCATGTCTTAACCAATTTGATTGCTACCGATATATACTCCTAATTTTGTGAAGTTATGCCTTCCTGGAGGCATATGGATGCTAATCAAGTACATTCTTTATCTTTAACTCTTTGTTCTAAATCCTTCTCAGATACCTGGGGTCCCAGTGATGTTTGGTCTGCGAAATGCTCTGTTTCTTGAGCAACTTTCAGCATTCCAGCGTGAATTTGTGAAGGCTTCTGAAGAAGAAAGGTTGCATATGACTGATTCAGAGTACAATTTATTACAAAAAAGAGTAAAGAGCATACTGAATACCAAGGTATTAAAGGACTCTTCTACTGCAGAGGACGGAACTGGTGATGAGGATTTACAGGGTCAGATTCCAGCCAGTCTAGTGCCTAGGAAGACGGAAGCAAAGGACAAGGCTCAATTTAAAAGAAAAAGAGCAAAGGTTGTATTCCATTGTAACTGATGGTCTCTTGTACTTATACTCTTATTTCCATCTCTTCTGCATGCACACCCGTTATTCCCCCAACCCCTTGTGAACCTGTGGAGTAAGGATTCTTTCTCATTATCTTCGAAAATATTTGAAGACTTGGTCTAGTTTGGGGGCACTGACAGTTCATGATAATTAATATATGAAACTTTTTGTTGAAAGTTGTCTCAACTCTCAACAGTTCTGAAGCTTTAACTAGACCTGTTTCCAAAATCAAATGGAAGATTGATTTATGAGCTCTGTGCTTCAGTTGATAGTCGAGAACATCTGAAGCTGAGGGTAATGCCTTTGGTCGTTAGTGGTTGAGCTTATAATGTCTCATTGCTCTGTATAGGAGATGTCCACTGTAACACCTTTTTGATGCTATCTTTTGTTACATCTCTTTTTGTAAAAATGTAAGAATTGCCTTTCTATTGTTTCAGATTTATCAGTTAGAACATTGCTCCCTTAATGGTTGCTTCTTCTGCATACATTTTTCCCTCCCCCACCCCTCTATCCATTGCTGATGTTTGGACAAACAGATAATGACTCTATACCTGATGTCTGATATCCTTTCTCATGAATAAGTCACTATCGTAGTTTTCTAAGCACTTCACAATTCCGTGTGTTTCTGGTTTATTCATTTATATAATTTTATTTGTTTATACTAGTAAGTCACTATCGTAGTTTCTAAGCACTTCAAACTGCTGTGTGTTTCTTCATTTGTATAATTTTATTTGTTTATTTATATGGTTATCTAACTCATAGGCTTTCATTGATTTATTCAACCTTGCAGGGTCCGAACCCACTGTCATGTAAGAAGAAGAAAACTATTAGCAGTTCAGGTCCCAATACAGGGAAGGTGAGTTTCTGTTTTCATGAATGCTTGCAGTTTTTTTTACTTTTTTTTTTTAATTTTTTTTTTTATCTCGAGCTCTTTTGCTGGTTTTATAAGCGGTTTCGCATGTAGAGAATGTTTATATTATTGGTTCAAGCTTATGATCTGATTCGCTTGCATAGTTACTCCCTTCGTCTTAAATTAGTTTTTGTACTTTCCTTTTTCGTCTGCCCTAAGGGCAGACTAGTTTTTTACGCATCTAGTATGGGAAAGATCTCATTAATATTTTAATACACCTCTCTTCTAGGTTGCACGGAAACGCGAAACGGAAACGGATACGGGGATACGTGGGAACGGGGAAACGGCGAATTTTCAAATTGTAGGAAACGGGGAAACGGATTTTAAATAATTTAAATAATAGAATTTTAATAAATATTCCGTAAAAGGAATGCAAATTATACAATAATGGCAGGAAACCAGAAATGCAAATAAACTATAAAAAAAAGGCAAATGAGATAGACACCCTTTACCCACTTTCTCCTTCACCTACCCTTCCTGTTTCAATTCTTCATCGTCCCTAAAACAAGAAGCACTCATCTAATAGTTTCTCTCTCTCCTCTAACACCCAACCATTAAAACTTAAATTTTCAAAATGATTGAAATGTGAATACCCAAATACATAAAACTGAATTCCCAGAAAACCAATTCCATAAATTAACAAAATCATTAAATAATCTGATACTACACATTTGAAGGAGTAGGAGGGGAAAACGTCTGAACCAACTCGGAAACGTCTTAAGATCTAAAGAATCACGTTTCTTAGGCGTATTTTAAAGCTATAAACTAACAAAACGTTTCTGAACAAAGTGAAACGTTTCTCAGGCGTTTCAATACGCGTTTCACCGTTTCGCGTCTCCGAAACGTTTCTGAAACGGCAAGTTGTTAATTTTCGCCGTTTCCGTGCATCATACCCTCTCTTCATCACTACTAAAAGTTTAGGGTCCACACTCTTCTCTTAAACTCAATAAATAGAATACTCCACGTTTTCCAATTAGATTTAGATTTTCGGGAAAAAAAACCCAACTATCACCTATCACCTATCACCTATTACATCTACCTTTTGAATAGAATAAGAAGTTGATAACCAAACAAGAACTTATCACCTAAAATCACGTGTTATGTTAAATGTCAAACTAATTTGGAACAGAGGAAGTATAACAAATCAAATTCAGGTTTTAAGGATATTGTGATTGTTTCTTCCTATTTTCTTGAAGATCTTGAATATCTTGTGTAAGGTGTAAGTGAAGATTTCAGTTCAGTCATTTAGGCACATGCGTGGAACCTATTTGGTGTTAAGTCCGACCATCCAGTGTATTGTTAACATTTCTGAGTAAAACATGAGAACACCCTGAATCTAAAAGGTCACTATTTGCCTGCCTGCGGTTGTATAGCTTAAGTGTTGAAGCCAGAAAAAGGGATCTATTTGTTTGTTTAGTCCTTAGTTCCTTACTGCTTTAGTAGGTGTCTAGATCTTGCCTATGAACATGTTGGAGCAACATTCGATGGCTTAAAAAAAAAAAAATCTCAGGCTTTTTAATATTCATAATGTTGCTCTATATTTAGTTGCATTTTGTATTTACGTGCCATGCGGGGAAGCAAGCTTCATCTATCACATATTAGCTTCAGTTTAAAGTATGATGTGTTACCCCCATCAATTGAAGTTCATACTGCTTCTAAAGAGCAGAAAACTCCACTGCATACTTGATTGTTTTATAACCGTAAAACTGATGTCCTAGGTTCAAATTTCTCAGCATCATATGGGTGTTTACGCTTCTCATGGACCAAGCAAAGATTCCAATAGAATGAAACTAATTTTTAATCCTCGCAAAGTGAAATATCTCATTGAGACAGGTATTTTGGATGCAGGTAGACAAGACTAGCAGTGACGCAAAGAGAAGCAGACCTCGTACAAGGAAAAGATCTCGGAAGGCCAACACATCCTCAGATGGCGCATGAATTTTGTTTGTCTTAGAGCTTCGTATAGGTCATTGTAGGCTTCAGGTTTTTTGGTATGAGTTAAAAGTTTATCGAATAGGGTTTGGAAGACTGGAATCAATGTTCACATATCAGTTTAGTACGATTGCCATGTCTAGTCTATAATCGTGTACTTGTGGATTGTGATAACAAATTCTCAGAGATAAAGCGCATAATTTTTAACAGTCTGCAATCAAGGGTCTTGTTTGGCTTTATGTATTCAACAAAGACTGGAATCAAGGGTCTTGTTTTGTTTGGCTTTTTGTATTCAACAAAAACATTGATTTTTCTTATAAACTTTGTTTTTTTTTTTGACAAGCAAGAGAAAGGTTATGTTATAAACCATGAAACAATTTACAACCTAGGCTGCAGAGCAGGAAAACACACCTTCTAAGAAGGAAACACCTAGAACACGAACTGCCAACAACAAGCAAGACTCAAAATCTTTCTAATTATCAAGTATACAACTAGTCCCT

mRNA sequence

AACCTTTTCCTAAAACCTCGACTCATTCTCTTTCCCTCTTCCTCCTAGTCTCCAAAAATGAGGTTCAAGAAGCAGAAGCGTCACAGAAAAACCGTCAGAATCTACACTGCTTGTTTTGGATTTCGAGAACCTTTCAAAGTACTCTGCGATGGCACTTTTGTTCATCACCTTGTTGTTAATAATCTCTCTCCTGAAAGTTCCGTCGAAAATACTCTCGGCGCTTCTGTTCAGCTCTTCACTACCCAATGTGTTATTGAAGAGTTAAAGTCTCTTGGAAGTTCACATGTTGAATCGTTTCTTGCTGCTCGGAAAGATTACAAGCTTGCTAGATGTGAGCATGAAGAGAAGGAAAGTGCTTTGAATTGCATAATGAAGATTATTGGAGAAAAAAATCCCGAACACTTCTTTGTTGCTACTCAAGACATTGACTTACGAAAGAACTGTCGGAAGATACCTGGGGTCCCAGTGATGTTTGGTCTGCGAAATGCTCTGTTTCTTGAGCAACTTTCAGCATTCCAGCGTGAATTTGTGAAGGCTTCTGAAGAAGAAAGGTTGCATATGACTGATTCAGAGTACAATTTATTACAAAAAAGAGTAAAGAGCATACTGAATACCAAGGTATTAAAGGACTCTTCTACTGCAGAGGACGGAACTGGTGATGAGGATTTACAGGGTCAGATTCCAGCCAGTCTAGTGCCTAGGAAGACGGAAGCAAAGGACAAGGCTCAATTTAAAAGAAAAAGAGCAAAGGGTCCGAACCCACTGTCATGTAAGAAGAAGAAAACTATTAGCAGTTCAGGTCCCAATACAGGGAAGGTAGACAAGACTAGCAGTGACGCAAAGAGAAGCAGACCTCGTACAAGGAAAAGATCTCGGAAGGCCAACACATCCTCAGATGGCGCATGAATTTTGTTTGTCTTAGAGCTTCGTATAGGTCATTGTAGGCTTCAGGTTTTTTGGTATGAGTTAAAAGTTTATCGAATAGGGTTTGGAAGACTGGAATCAATGTTCACATATCAGTTTAGTACGATTGCCATGTCTAGTCTATAATCGTGTACTTGTGGATTGTGATAACAAATTCTCAGAGATAAAGCGCATAATTTTTAACAGTCTGCAATCAAGGGTCTTGTTTGGCTTTATGTATTCAACAAAGACTGGAATCAAGGGTCTTGTTTTGTTTGGCTTTTTGTATTCAACAAAAACATTGATTTTTCTTATAAACTTTGTTTTTTTTTTTGACAAGCAAGAGAAAGGTTATGTTATAAACCATGAAACAATTTACAACCTAGGCTGCAGAGCAGGAAAACACACCTTCTAAGAAGGAAACACCTAGAACACGAACTGCCAACAACAAGCAAGACTCAAAATCTTTCTAATTATCAAGTATACAACTAGTCCCT

Coding sequence (CDS)

ATGAGGTTCAAGAAGCAGAAGCGTCACAGAAAAACCGTCAGAATCTACACTGCTTGTTTTGGATTTCGAGAACCTTTCAAAGTACTCTGCGATGGCACTTTTGTTCATCACCTTGTTGTTAATAATCTCTCTCCTGAAAGTTCCGTCGAAAATACTCTCGGCGCTTCTGTTCAGCTCTTCACTACCCAATGTGTTATTGAAGAGTTAAAGTCTCTTGGAAGTTCACATGTTGAATCGTTTCTTGCTGCTCGGAAAGATTACAAGCTTGCTAGATGTGAGCATGAAGAGAAGGAAAGTGCTTTGAATTGCATAATGAAGATTATTGGAGAAAAAAATCCCGAACACTTCTTTGTTGCTACTCAAGACATTGACTTACGAAAGAACTGTCGGAAGATACCTGGGGTCCCAGTGATGTTTGGTCTGCGAAATGCTCTGTTTCTTGAGCAACTTTCAGCATTCCAGCGTGAATTTGTGAAGGCTTCTGAAGAAGAAAGGTTGCATATGACTGATTCAGAGTACAATTTATTACAAAAAAGAGTAAAGAGCATACTGAATACCAAGGTATTAAAGGACTCTTCTACTGCAGAGGACGGAACTGGTGATGAGGATTTACAGGGTCAGATTCCAGCCAGTCTAGTGCCTAGGAAGACGGAAGCAAAGGACAAGGCTCAATTTAAAAGAAAAAGAGCAAAGGGTCCGAACCCACTGTCATGTAAGAAGAAGAAAACTATTAGCAGTTCAGGTCCCAATACAGGGAAGGTAGACAAGACTAGCAGTGACGCAAAGAGAAGCAGACCTCGTACAAGGAAAAGATCTCGGAAGGCCAACACATCCTCAGATGGCGCATGA

Protein sequence

MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLFTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVATQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRVKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKKKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo26608	Spo26608	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo26608.1	Spo26608.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26608.1.utr5p.1	Spo26608.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26608.1.CDS.6	Spo26608.1.CDS.6	CDS
Spo26608.1.CDS.5	Spo26608.1.CDS.5	CDS
Spo26608.1.CDS.4	Spo26608.1.CDS.4	CDS
Spo26608.1.CDS.3	Spo26608.1.CDS.3	CDS
Spo26608.1.CDS.2	Spo26608.1.CDS.2	CDS
Spo26608.1.CDS.1	Spo26608.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26608.1.utr3p.1	Spo26608.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo26608.1.exon.6	Spo26608.1.exon.6	exon
Spo26608.1.exon.5	Spo26608.1.exon.5	exon
Spo26608.1.exon.4	Spo26608.1.exon.4	exon
Spo26608.1.exon.3	Spo26608.1.exon.3	exon
Spo26608.1.exon.2	Spo26608.1.exon.2	exon
Spo26608.1.exon.1	Spo26608.1.exon.1	exon

Homology

[Close]

BLAST of Spo26608.1 vs. NCBI nr
Match: gi|902239862|gb|KNA25766.1| (hypothetical protein SOVF_003870 [Spinacia oleracea])

HSP 1 Score: 544.7 bits (1402), Expect = 9.800e-152
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF
Sbjct: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120
           TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT
Sbjct: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120

Query: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180
           QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV
Sbjct: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180

Query: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240
           KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK
Sbjct: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240

Query: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA 283
           KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA
Sbjct: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA 282

[Close]

BLAST of Spo26608.1 vs. NCBI nr
Match: gi|731343441|ref|XP_010682894.1| (PREDICTED: rRNA-processing protein UTP23 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 425.6 bits (1093), Expect = 6.600e-116
Identity = 221/284 (77.82%), Postives = 248/284 (87.32%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MRF K KRHRK VR YTACFGFREPFKVLCDGTFVHHLV N+LSP++SV N LGASVQLF
Sbjct: 1   MRFTKHKRHRKIVRFYTACFGFREPFKVLCDGTFVHHLVSNHLSPDTSVSNALGASVQLF 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120
           T++CVIEELKSLGSSH +SF AARKD+KLARCEHEEKESA NC+++IIGE NPEHFFVAT
Sbjct: 61  TSKCVIEELKSLGSSHAQSFHAARKDFKLARCEHEEKESAFNCMIEIIGENNPEHFFVAT 120

Query: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180
           QD+DLRK CRKIPGVPV+FGLRNA+F+EQL +FQRE+VKA+EE RLHMTDSE  LLQKRV
Sbjct: 121 QDMDLRKKCRKIPGVPVLFGLRNAVFVEQLPSFQREYVKAAEERRLHMTDSEQKLLQKRV 180

Query: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240
           KSILN + LKDSS AE+   D DL+GQ+ AS  PRKT+AKDK QFKRK+AKGPNPLSC K
Sbjct: 181 KSILNAEELKDSSNAEEEIDDVDLRGQVIASREPRKTDAKDKVQFKRKKAKGPNPLSC-K 240

Query: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSR--KANTSSDGA 283
           KKT SSS PN GK DKTSSDAKRSRPR RKRSR  K+++ +DGA
Sbjct: 241 KKTTSSSAPNAGKADKTSSDAKRSRPRKRKRSRTDKSSSRTDGA 283

[Close]

BLAST of Spo26608.1 vs. NCBI nr
Match: gi|143346850|gb|ABO93204.1| (unknown protein, partial [Silene latifolia])

HSP 1 Score: 316.6 bits (810), Expect = 4.300e-83
Identity = 173/280 (61.79%), Postives = 211/280 (75.36%), Query Frame = 1


		  
Query: 5   KQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLFTTQC 64
           KQKRHRK VR YTACFGFREPFKVLCDGTF+HHL  NNL P+ SV + L A V LFTT+C
Sbjct: 4   KQKRHRKIVRFYTACFGFREPFKVLCDGTFIHHLSNNNLVPDKSVSSALAAPVHLFTTKC 63

Query: 65  VIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVATQDID 124
            I EL+SLG S+  S  +AR+D++LA+CEH++  SA +CI++ +G+ NPEHFFVA+QD+ 
Sbjct: 64  AIAELESLGRSYGGSVNSARRDFRLAKCEHDQNVSAYDCIVETVGDNNPEHFFVASQDVK 123

Query: 125 LRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRVKSIL 184
           LRK C+K+PGVPVM+GLRNA++L+QLS+FQRE+VK SEEERL MTDSEY LLQKRVK I 
Sbjct: 124 LRKQCQKVPGVPVMYGLRNAVYLDQLSSFQREYVKVSEEERLRMTDSEYKLLQKRVKKIS 183

Query: 185 NTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKT-----EAKDKAQFKRKRAKGPNPLSCK 244
           N+++  DSS  E+G  DE  +   P +L   KT     E KDKA+FK KRAK PNPLS K
Sbjct: 184 NSEI--DSS--EEGNEDEISE---PRALDNCKTYKRGLEIKDKAKFKLKRAKAPNPLSRK 243

Query: 245 KKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSS 280
           KK   S+   N+GK +   S A RSRPR RKRS KA TSS
Sbjct: 244 KKSKPSTPASNSGKKENAGSGATRSRPRKRKRSHKAQTSS 276

[Close]

BLAST of Spo26608.1 vs. NCBI nr
Match: gi|565371361|ref|XP_006352273.1| (PREDICTED: rRNA-processing protein UTP23 homolog isoform X2 [Solanum tuberosum])

HSP 1 Score: 300.1 bits (767), Expect = 4.200e-78
Identity = 167/278 (60.07%), Postives = 210/278 (75.54%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSP-ESSVENTLGASVQL 60
           MR KKQKRHR+ VR YTACFGFREPFK+ CDGTFVHHLVVN ++P ++++ N LGA V+L
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFREPFKIFCDGTFVHHLVVNRITPADTALTNILGAPVKL 60

Query: 61  FTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVA 120
           FTT+CV+ ELKSLG+S+ E+  AA   +  ARC+HE ++SA +CI ++IGEKN EHFFVA
Sbjct: 61  FTTRCVLAELKSLGASYQEALNAANNLF-TARCDHETRKSAEDCITEVIGEKNSEHFFVA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD DLR++ +KIPGVPV+FGLRNALFLEQ S+FQREF K+SEEERLHMTD EYN+L++ 
Sbjct: 121 TQDADLRRSLQKIPGVPVIFGLRNALFLEQPSSFQREFAKSSEEERLHMTDLEYNMLRQN 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRK-TEAKDKAQFKRKRAKGPNPLSC 240
            K  L+     DSS A +   D+  Q QI  + V R  ++ KDK +FKRK+AKGPNPLS 
Sbjct: 181 KKRRLSDDKQGDSSDASEEKIDDVSQVQIINTNVKRNGSDVKDKVRFKRKKAKGPNPLSV 240

Query: 241 KKKKTIS--SSGPNTGKVDKTSSDAKRSRPRTRKRSRK 275
           KKKK  S  ++   +GK +K      RSR R+RKRSRK
Sbjct: 241 KKKKKKSGDTNFTTSGKENKNGEGTVRSRKRSRKRSRK 277

[Close]

BLAST of Spo26608.1 vs. NCBI nr
Match: gi|971559032|ref|XP_015166345.1| (PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Solanum tuberosum])

HSP 1 Score: 300.1 bits (767), Expect = 4.200e-78
Identity = 167/278 (60.07%), Postives = 210/278 (75.54%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSP-ESSVENTLGASVQL 60
           MR KKQKRHR+ VR YTACFGFREPFK+ CDGTFVHHLVVN ++P ++++ N LGA V+L
Sbjct: 15  MRVKKQKRHRRAVRFYTACFGFREPFKIFCDGTFVHHLVVNRITPADTALTNILGAPVKL 74

Query: 61  FTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVA 120
           FTT+CV+ ELKSLG+S+ E+  AA   +  ARC+HE ++SA +CI ++IGEKN EHFFVA
Sbjct: 75  FTTRCVLAELKSLGASYQEALNAANNLF-TARCDHETRKSAEDCITEVIGEKNSEHFFVA 134

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD DLR++ +KIPGVPV+FGLRNALFLEQ S+FQREF K+SEEERLHMTD EYN+L++ 
Sbjct: 135 TQDADLRRSLQKIPGVPVIFGLRNALFLEQPSSFQREFAKSSEEERLHMTDLEYNMLRQN 194

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRK-TEAKDKAQFKRKRAKGPNPLSC 240
            K  L+     DSS A +   D+  Q QI  + V R  ++ KDK +FKRK+AKGPNPLS 
Sbjct: 195 KKRRLSDDKQGDSSDASEEKIDDVSQVQIINTNVKRNGSDVKDKVRFKRKKAKGPNPLSV 254

Query: 241 KKKKTIS--SSGPNTGKVDKTSSDAKRSRPRTRKRSRK 275
           KKKK  S  ++   +GK +K      RSR R+RKRSRK
Sbjct: 255 KKKKKKSGDTNFTTSGKENKNGEGTVRSRKRSRKRSRK 291

[Close]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Z2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003870 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 6.800e-152
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF
Sbjct: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120
           TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT
Sbjct: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120

Query: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180
           QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV
Sbjct: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180

Query: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240
           KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK
Sbjct: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240

Query: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA 283
           KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA
Sbjct: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSDGA 282

[Close]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C273_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g151720 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.600e-116
Identity = 221/284 (77.82%), Postives = 248/284 (87.32%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MRF K KRHRK VR YTACFGFREPFKVLCDGTFVHHLV N+LSP++SV N LGASVQLF
Sbjct: 1   MRFTKHKRHRKIVRFYTACFGFREPFKVLCDGTFVHHLVSNHLSPDTSVSNALGASVQLF 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVAT 120
           T++CVIEELKSLGSSH +SF AARKD+KLARCEHEEKESA NC+++IIGE NPEHFFVAT
Sbjct: 61  TSKCVIEELKSLGSSHAQSFHAARKDFKLARCEHEEKESAFNCMIEIIGENNPEHFFVAT 120

Query: 121 QDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRV 180
           QD+DLRK CRKIPGVPV+FGLRNA+F+EQL +FQRE+VKA+EE RLHMTDSE  LLQKRV
Sbjct: 121 QDMDLRKKCRKIPGVPVLFGLRNAVFVEQLPSFQREYVKAAEERRLHMTDSEQKLLQKRV 180

Query: 181 KSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCKK 240
           KSILN + LKDSS AE+   D DL+GQ+ AS  PRKT+AKDK QFKRK+AKGPNPLSC K
Sbjct: 181 KSILNAEELKDSSNAEEEIDDVDLRGQVIASREPRKTDAKDKVQFKRKKAKGPNPLSC-K 240

Query: 241 KKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSR--KANTSSDGA 283
           KKT SSS PN GK DKTSSDAKRSRPR RKRSR  K+++ +DGA
Sbjct: 241 KKTTSSSAPNAGKADKTSSDAKRSRPRKRKRSRTDKSSSRTDGA 283

[Close]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Match: A4ULF4_SILLA (Putative uncharacterized protein X6b (Fragment) OS=Silene latifolia GN=X6b PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.000e-83
Identity = 173/280 (61.79%), Postives = 211/280 (75.36%), Query Frame = 1


		  
Query: 5   KQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLFTTQC 64
           KQKRHRK VR YTACFGFREPFKVLCDGTF+HHL  NNL P+ SV + L A V LFTT+C
Sbjct: 4   KQKRHRKIVRFYTACFGFREPFKVLCDGTFIHHLSNNNLVPDKSVSSALAAPVHLFTTKC 63

Query: 65  VIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVATQDID 124
            I EL+SLG S+  S  +AR+D++LA+CEH++  SA +CI++ +G+ NPEHFFVA+QD+ 
Sbjct: 64  AIAELESLGRSYGGSVNSARRDFRLAKCEHDQNVSAYDCIVETVGDNNPEHFFVASQDVK 123

Query: 125 LRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKRVKSIL 184
           LRK C+K+PGVPVM+GLRNA++L+QLS+FQRE+VK SEEERL MTDSEY LLQKRVK I 
Sbjct: 124 LRKQCQKVPGVPVMYGLRNAVYLDQLSSFQREYVKVSEEERLRMTDSEYKLLQKRVKKIS 183

Query: 185 NTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKT-----EAKDKAQFKRKRAKGPNPLSCK 244
           N+++  DSS  E+G  DE  +   P +L   KT     E KDKA+FK KRAK PNPLS K
Sbjct: 184 NSEI--DSS--EEGNEDEISE---PRALDNCKTYKRGLEIKDKAKFKLKRAKAPNPLSRK 243

Query: 245 KKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSS 280
           KK   S+   N+GK +   S A RSRPR RKRS KA TSS
Sbjct: 244 KKSKPSTPASNSGKKENAGSGATRSRPRKRKRSHKAQTSS 276

[Close]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Match: M1A4X1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005779 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.900e-78
Identity = 167/278 (60.07%), Postives = 210/278 (75.54%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSP-ESSVENTLGASVQL 60
           MR KKQKRHR+ VR YTACFGFREPFK+ CDGTFVHHLVVN ++P ++++ N LGA V+L
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFREPFKIFCDGTFVHHLVVNRITPADTALTNILGAPVKL 60

Query: 61  FTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVA 120
           FTT+CV+ ELKSLG+S+ E+  AA   +  ARC+HE ++SA +CI ++IGEKN EHFFVA
Sbjct: 61  FTTRCVLAELKSLGASYQEALNAANNLF-TARCDHETRKSAEDCITEVIGEKNSEHFFVA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD DLR++ +KIPGVPV+FGLRNALFLEQ S+FQREF K+SEEERLHMTD EYN+L++ 
Sbjct: 121 TQDADLRRSLQKIPGVPVIFGLRNALFLEQPSSFQREFAKSSEEERLHMTDLEYNMLRQN 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRK-TEAKDKAQFKRKRAKGPNPLSC 240
            K  L+     DSS A +   D+  Q QI  + V R  ++ KDK +FKRK+AKGPNPLS 
Sbjct: 181 KKRRLSDDKQGDSSDASEEKIDDVSQVQIINTNVKRNGSDVKDKVRFKRKKAKGPNPLSV 240

Query: 241 KKKKTIS--SSGPNTGKVDKTSSDAKRSRPRTRKRSRK 275
           KKKK  S  ++   +GK +K      RSR R+RKRSRK
Sbjct: 241 KKKKKKSGDTNFTTSGKENKNGEGTVRSRKRSRKRSRK 277

[Close]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HUL7_SOLCH (Putative rRNA-processing protein UTP23-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.000e-78
Identity = 167/279 (59.86%), Postives = 210/279 (75.27%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSP-ESSVENTLGASVQL 60
           MR KKQKRHR+ VR YTACFGFREPFK+ CDGTFVHHLVVN ++P ++++ N LGA V+L
Sbjct: 1   MRVKKQKRHRRAVRFYTACFGFREPFKIFCDGTFVHHLVVNRITPADTALTNILGAPVKL 60

Query: 61  FTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVA 120
           FTT+CV+ ELKSLG+S+ E+  AA   +  ARCEHE ++SA +CI ++IGE N EHFFVA
Sbjct: 61  FTTRCVLAELKSLGASYQEALNAANNLF-TARCEHETRKSAEDCITEVIGENNSEHFFVA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD DLR++ +KIPGVPV+FGLRNALFLEQ S+FQREF K+SEEERLHMTD EYN+L++R
Sbjct: 121 TQDADLRRSLQKIPGVPVVFGLRNALFLEQPSSFQREFAKSSEEERLHMTDLEYNMLRQR 180

Query: 181 VKSILNTKVLKDSS-TAEDGTGDEDLQGQIPASLVPRK-TEAKDKAQFKRKRAKGPNPLS 240
            K  L+     DSS  A +   D+  Q QI  + V R  ++ KDK +FKRK+AKGPNPLS
Sbjct: 181 KKRRLSDDKQGDSSDDASEEKIDDVSQAQISNTNVKRNGSDVKDKVRFKRKKAKGPNPLS 240

Query: 241 C--KKKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRK 275
              KKKK++ ++    GK +K      RSR R+RKRSRK
Sbjct: 241 VKKKKKKSVDTNFTTLGKENKNGEGTVRSRKRSRKRSRK 278

[Close]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Match: UTP23_BOVIN (rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.700e-24
Identity = 84/273 (30.77%), Postives = 136/273 (49.82%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           M+  +QK  +K +  +   FG REP+++L DGTF    +   +     +   L A  QL 
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMAETQLC 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEH-EEKESALNCIMKIIGEKNPEHFFVA 120
           TT+CV++EL++LG     + L A+K  ++  C H +   S   C++ ++ + NP H+F+A
Sbjct: 61  TTRCVLKELETLGKDLYGAKLIAQK-CQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD +L    +K PG+P+MF ++N + L++ S     FVKA E  +L     + ++ Q  
Sbjct: 121 TQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQLVSVHEKQSIRQ-- 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCK 240
                    LK+             QG +         + + + + KRK+  GPNPLSC 
Sbjct: 181 ---------LKEE------------QGLV--------KDPEQRRRKKRKKVSGPNPLSCL 235

Query: 241 KKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRS 273
           KKK        T   + ++S+ KR R R R RS
Sbjct: 241 KKK------KKTQDTNSSASEKKRKRKRIRNRS 235

[Close]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Match: UTP23_HUMAN (rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.500e-24
Identity = 88/273 (32.23%), Postives = 135/273 (49.45%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           M+  +QK  +K +  +   FG REP+++L DGTF    +   +     +   L    QL 
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLC 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEH-EEKESALNCIMKIIGEKNPEHFFVA 120
           TT+CV++EL++LG     + L A+K  ++  C H +   S   C++ ++ E NP H+FVA
Sbjct: 61  TTRCVLKELETLGKDLYGAKLIAQK-CQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD +L    +K PGVP+MF ++N + L++ S     FVKA E  +L     + ++    
Sbjct: 121 TQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLVSVHEKESI---- 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCK 240
                  K LK+                    LV    +++ K   KRK+  GPNPLSC 
Sbjct: 181 -------KHLKEEQ-----------------GLVKNTEQSRRK---KRKKISGPNPLSCL 235

Query: 241 KKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRS 273
           KKK      P+T     ++S+ KR R R R RS
Sbjct: 241 KKK---KKAPDT---QSSASEKKRKRKRIRNRS 235

[Close]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Match: UTP23_MOUSE (rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.100e-22
Identity = 88/286 (30.77%), Postives = 139/286 (48.60%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           M+  +QK  +K +  +   FG REP+++L DGTF    +   +     +   L    QL 
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLRDQLPRYLMGETQLC 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEH-EEKESALNCIMKIIGEKNPEHFFVA 120
           TT+CV++EL++LG     + L A+K  ++  C H +   S   C++ ++ E NP H+FVA
Sbjct: 61  TTRCVLKELETLGKELYGAKLIAQK-CQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVA 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD +L    ++ PG+P+MF ++N + L++ S     FVKA E  +L     + ++ Q  
Sbjct: 121 TQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQLVSVHEKQSIKQ-- 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSC- 240
                    LK+             QG +    + R+         K+K+  GPNPLSC 
Sbjct: 181 ---------LKEE------------QGLVRNPDLRRRRR-------KKKKVGGPNPLSCL 240

Query: 241 -KKKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSR-KANTSSDGA 283
            KKKK   +  P        +S+ KR R R R RS  K ++   GA
Sbjct: 241 KKKKKAQDTKSP--------ASEKKRKRKRIRNRSTLKVSSEQQGA 247

[Close]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Match: UTP23_SCHPO (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.600e-22
Identity = 79/246 (32.11%), Postives = 122/246 (49.59%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MR K+ K +RK +  Y   FGFREP++VL D  F+  L    +  ++++  T+  +++  
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPM 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEH-EEKESALNCIMKI--IGEKNPEHFF 120
            TQC I +L S  S  ++  +   K ++  RC H +E  S   CI  +  I  +N   + 
Sbjct: 61  ITQCCIRQLYS-KSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYV 120

Query: 121 VATQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQ 180
           VATQD +LR+  R +PGVP+++  R+ + LE  S          E  ++ M+  E  LL 
Sbjct: 121 VATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLS 180

Query: 181 KRVKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLS 240
            + +S  N   + D  T E      DL G           ++  KA  KRK  KGPNPLS
Sbjct: 181 GKKRS-ANELAIDDQDTKE----STDLAG---------TEDSAPKANKKRKGPKGPNPLS 231

Query: 241 CKKKKT 244
            KK+ +
Sbjct: 241 IKKRSS 231

[Close]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Match: UTP23_YEAST (rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.600e-21
Identity = 82/282 (29.08%), Postives = 134/282 (47.52%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLF 60
           MR K+ K +RK + +Y+  F FREP++VL D   V     +N +  S ++ TL A V++ 
Sbjct: 1   MRQKRAKSYRKQLLVYSHTFKFREPYQVLVDNQLVLECNNSNFNLPSGLKRTLQADVKVM 60

Query: 61  TTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKE--SALNCIMKI--IGEKNPEHF 120
            TQC I+   +L  +  +  +   K ++  RC H  K+  S   CI  +  I   N   +
Sbjct: 61  ITQCCIQ---ALYETRNDGAINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKHRY 120

Query: 121 FVATQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLL 180
            VA+QDIDLR+  R +PGVP++   R+ + +E LS    +  K +EE++L+         
Sbjct: 121 VVASQDIDLRRKLRTVPGVPLIHLTRSVMVMEPLSTASAKASKITEEQKLYKG------- 180

Query: 181 QKRVKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPL 240
                  LN   ++    + DG+G E +                   + ++   K PNPL
Sbjct: 181 -------LNDPNIEKLQESGDGSGKESI------------------TKKRKLGPKAPNPL 240

Query: 241 SCKKKKTISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTS 279
           S KKKK ++S         K   D  + + + R+R  K+NT+
Sbjct: 241 SVKKKKKVNSPSDEV----KDKEDTSKEKKKRRRRKHKSNTN 243

[Close]

BLAST of Spo26608.1 vs. TAIR (Arabidopsis)
Match: AT2G34570.1 (PIN domain-like family protein)

HSP 1 Score: 214.9 bits (546), Expect = 6.300e-56
Identity = 125/286 (43.71%), Postives = 176/286 (61.54%), Query Frame = 1


		  
Query: 1   MRFKKQKRHRKTVRIYTACFGFREPFKVLCDGTFVHHLVVNNLSP-ESSVENTLGASVQL 60
           MR K+QK++R+TVR +T C+GFR+P+KVLCDGTFVHHLV N ++P +++V   LG  V+L
Sbjct: 1   MRVKRQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKL 60

Query: 61  FTTQCVIEELKSLGSSHVESFLAARKDYKLARCEHEEKESALNCIMKIIGEKNPEHFFVA 120
           FTT+CVI EL+ LG    ES L A +    A CEHEE ++A  C+ ++IG +N EHFF+ 
Sbjct: 61  FTTRCVIAELEKLGKDFAES-LEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLG 120

Query: 121 TQDIDLRKNCRKIPGVPVMFGLRNALFLEQLSAFQREFVKASEEERLHMTDSEYNLLQKR 180
           TQD + R+  ++   VP++FGLRN L ++Q S FQR+  K SE +RL MTD+E  LL KR
Sbjct: 121 TQDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLLVKR 180

Query: 181 VKSILNTKVLKDSSTAEDGTGDEDLQGQIPASLVPRKTEAKDKAQFKRKRAKGPNPLSCK 240
              I+       +S  ++ T   +  G             KD+ QFKR RAKGPNPLSC 
Sbjct: 181 TAKII-------ASNRKEATIANEEWGMPRVVSTKNGLGVKDRPQFKRNRAKGPNPLSCM 240

Query: 241 KKK-----TISSSGPNTGKVDKTSSDAKRSRPRTRKRSRKANTSSD 281
           KKK     + S +  N+    +       ++ R+RKRS+K  +  +
Sbjct: 241 KKKKENPQSKSKADSNSNAQKEKKEGGSDTQKRSRKRSKKGKSGPE 278

[Close]

BLAST of Spo26608.1 vs. TAIR (Arabidopsis)
Match: AT2G46230.1 (PIN domain-like family protein)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-10
Identity = 42/134 (31.34%), Postives = 68/134 (50.75%), Query Frame = 1


		  
Query: 25  PFKVLCDGTFVHHLVVNNLSPESSVENTLGASVQLFTTQCVIEELKSLGSSHVESFLAAR 84
           P++VL D  F++  + N +  E  + + L A+     T CV+ EL+ LG  +       R
Sbjct: 62  PYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKY-------R 121

Query: 85  KDYKLARCEHEEKESALNCIMK------IIGEKNPEH--FFVATQDIDLRKNCRKIPGVP 144
              ++A+  H E+   L CI K       + ++  +H  F VAT D DL++  RKIPGVP
Sbjct: 122 VALRIAKDPHFER---LPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVP 181

Query: 145 VMFGLRNALFLEQL 151
           +M+       +E+L
Sbjct: 182 IMYVTNRKYSIEKL 185

The following BLAST results are available for this feature:

BLAST of Spo26608.1 vs. NCBI nr
BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
BLAST of Spo26608.1 vs. TAIR (Arabidopsis)

BLAST of Spo26608.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902239862\|gb\|KNA25766.1\|	9.8e-152	100.	hypothetical protein SOVF_0038...	[more]
gi\|731343441\|ref\|XP_010682894.1\|	6.6e-116	77.8	PREDICTED: rRNA-processing pro...	[more]
gi\|143346850\|gb\|ABO93204.1\|	4.3e-83	61.7	unknown protein, partial [Sile...	[more]
gi\|565371361\|ref\|XP_006352273.1\|	4.2e-78	60.0	PREDICTED: rRNA-processing pro...	[more]
gi\|971559032\|ref\|XP_015166345.1\|	4.2e-78	60.0	PREDICTED: rRNA-processing pro...	[more]

BLAST of Spo26608.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S1Z2_SPIOL	6.8e-152	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C273_BETVU	4.6e-116	77.8	Uncharacterized protein OS=Bet...	[more]
A4ULF4_SILLA	3.0e-83	61.7	Putative uncharacterized prote...	[more]
M1A4X1_SOLTU	2.9e-78	60.0	Uncharacterized protein OS=Sol...	[more]
A0A0V0HUL7_SOLCH	5.0e-78	59.8	Putative rRNA-processing prote...	[more]

BLAST of Spo26608.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
UTP23_BOVIN	2.7e-24	30.7	rRNA-processing protein UTP23 ...	[more]
UTP23_HUMAN	4.5e-24	32.2	rRNA-processing protein UTP23 ...	[more]
UTP23_MOUSE	1.1e-22	30.7	rRNA-processing protein UTP23 ...	[more]
UTP23_SCHPO	5.6e-22	32.1	rRNA-processing protein utp23 ...	[more]
UTP23_YEAST	1.6e-21	29.0	rRNA-processing protein UTP23 ...	[more]

BLAST of Spo26608.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G34570.1	6.3e-56	43.7	PIN domain-like family protein	[more]
AT2G46230.1	4.0e-10	31.3	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 52..149 score: 1.8
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..199 score: 3.4E-98coord: 219..276 score: 3.4
None	No IPR available	PANTHER	PTHR12416:SF3	RRNA-PROCESSING PROTEIN UTP23 HOMOLOG	coord: 1..199 score: 3.4E-98coord: 219..276 score: 3.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032040	small-subunit processome