Spo26440.1 (mRNA)

Overview
NameSpo26440.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Descriptionalpha/beta-Hydrolases superfamily protein
Locationchr2 : 24479616 .. 24481950 (-)
Sequence length1316
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCTTGATTATGATAATCTCTATTATATAAGCCAAGAGGGGAGGGTTATTTACGTAACAACACTTTTGATGTCCACCAAGTAAAAGACTAAAAAAACCCCAACACCCCCAACAGATTACCTTCAACCCTTTCCACGCTAGTACTGCTTTCTCCTTCCTCAGTCTCACTTGCTCATTTTTGTTTTCTCAAAACCTAAACCTAAAAGCTTCGAATATCTCTCTCCACAAACACTAGAGCAAGAGAAATCGAGAGAGGAGAGAAAAAAATGGAAGATCCCAACACCCAAACATACGATGTTCCTCTCACGGATCTGCCTGGGTTCCCACCGATTTGGCCGAATCAAAACCCGATGTTGTTGTTAGCGGTGAAAAATCCTCCGGCAATCCGTCGACATTAATGGTTCTCGCCAGGAGAAGGCTGTAGCGGCATTCCCGACTTTTTCGTTAATTCTCTCTCCTCTGAACCTGTAAGCTCCACTCTAATGTCTAAATCACGATTTCTGTTTTTTTTGTTTGATTTGGTTAAATCTTAGAAATTGAACTTAGTTTCAGATGGAAGGTGTTTACCTTGATTAGATGATTTTTCCTCAAAATGGAGATGTTTCCAGAATTTGATATTTGCGTTTAATTTTTGCTTTTGTTTTTTTTTCAATTTCTGAGATTGTTTCTGGAATTTGATCTACAAATTTTGATCCGATAATAATAATTCTCATTTTGAAGTGAATAAATTGGATTTTGGTGAAGACGATGATGATGTGGGAGAGAGAAAGGCATATCCACATATGGGGTTTGGGTTTTAGAAGTGATGCTGCTACAAACTAGGTTGCTACTCCCTTCACCATCTTTCTCTTGCTTCTCTTGAGGTTGTTCTTCTTTCTCCTTTGTCGTTATTTTTCTGAATGTTGTGGGATGGCAAATTTATCTTATCAAAGGTAATTATGAGCTTTTTTGGAGTTTGGTATCTGGGATTTAAAATTACAATTTATTAAATGAAAATTTGGACCAAAGAAAAGCGACTGAAAAACGAAAATCTTACATTTAAACCTTCAGTTTGACTACATCACATAATAGATGGTTGATAATCAGGGAAAAGGAGGATTAATACTCCGTAACACAGTAGTTTTTTTGTTAAGACAAAAGTGATAGAAATTTAACCAATATCCAATATTAAACGACAAAGATGGGGAGGGGCATTTCAGTATACTGTGATAATACATGGATTTGATCTTATTTTATTGATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGTAAGGATGTTTCTCGCTTTTGTTATTTTTGTTTTATGCTATTTTGTTGGAGTGGATATATGTAGTTGTTTTAATATGGCAAGGCTTTCAATTTGATCTGTTGAAGGATGTCTGTTTCGTTTTGCAGCTTATTAATTATGTATTATGTCTGGCTAAATGGTTATACTCACGTACTGGGGTTTCTTGCTTTGTTTACGATTCCATTGCAATTGTTTGTTTCTTATGGTTGATTGCTTTGGTTAATTGGTTTTGAATGATTTTTGAATTGTTACAATGCAAATTCGTATTGGGTTGGACCTGATGGTATTGTTTGTTTCTTATGGTTGATTGATATGGATAATGCCATTAAATTTATTAAGAATTTAATAAATTCCATTGCAATATGAATTGTTCAAAACTGGAGAACTATAGGATTGGTCGTTCCAATGCAATAGAATCTATTAAGAACATAGATTCATATATTCAAGTCATATGAATCTATTTTTACAATGACTAGAATCTTTCCAATGTGAATTGTTCCAATGCAATAGAATCTATATAATAGAGATTGGCAAAGAAAACAAAGTCAATATTTTTTCCTGACATTTTCATTGTTTTGGCTTCACATGATTTGCTACAATAACAATCAATCAAATAAAGGTCTAATTAGTTATCTCATATTTATTATGAGTAGGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATGTATGCATCTTCATTTTTCTCTCTCACATATTTTTGCTGTTTTGATTGGTTTCATTCACTAGGGTATTGATGAATAATGAAAAAAGATATGAGCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

mRNA sequence

TTCTCTTGATTATGATAATCTCTATTATATAAGCCAAGAGGGGAGGGTTATTTACGTAACAACACTTTTGATGTCCACCAAGTAAAAGACTAAAAAAACCCCAACACCCCCAACAGATTACCTTCAACCCTTTCCACGCTAGTACTGCTTTCTCCTTCCTCAGTCTCACTTGCTCATTTTTGTTTTCTCAAAACCTAAACCTAAAAGCTTCGAATATCTCTCTCCACAAACACTAGAGCAAGAGAAATCGAGAGAGGAGAGAAAAAAATGGAAGATCCCAACACCCAAACATACGATGTTCCTCTCACGGATCTGCCTGGGTTCCCACCGATTTGGCCGAATCAAAACCCGATGTTGTTGTTAGCGGTGAAAAATCCTCCGGCAATCCGTCGACATTAATGGTTCTCGCCAGGAGAAGGCTGTAGCGGCATTCCCGACTTTTTCGTTAATTCTCTCTCCTCTGAACCTTGAATAAATTGGATTTTGGTGAAGACGATGATGATGTGGGAGAGAGAAAGGCATATCCACATATGGGGTTTGGGTTTTAGAAGTGATGCTGCTACAAACTAGGTTGCTACTCCCTTCACCATCTTTCTCTTGCTTCTCTTGAGGTTGTTCTTCTTTCTCCTTTGTCGTTATTTTTCTGAATGTTGTGGGATGGCAAATTTATCTTATCAAAGGTAATTATGAGCTTTTTTGGAGTTTGGTATCTGGGATTTAAAATTACAATTTATTAAATGAAAATTTGGACCAAAGAAAAGCGACTGAAAAACGAAAATCTTACATTTAAACCTTCAGTTTGACTACATCACATAATAGATGGTTGATAATCAGGGAAAAGGAGGATTAATACTCCGTAACACAGTAGTTTTTTTGTTAAGACAAAAGTGATAGAAATTTAACCAATATCCAATATTAAACGACAAAGATGGGGAGGGGCATTTCAGTATACTGTGATAATACATGGATTTGATCTTATTTTATTGATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

Coding sequence (CDS)

ATGGGATATGTTTATTCCTGCAGTGCTGCTGATTGGAAGTTTGGAGCGGAGCAGTTTGTTAAAATGCTCCCAGATAAAGTACATGTTCATTGGGAAAGGAACAAGACCCACAAGTGTGTGTGCGATGTGGCCGCTAAATTTTTCATCTTCAGAAGAGCCGTTGTTCTGCCTGTGCTTACCCCGTTGCTTGCACCAGGAAATCTGGTTTTTTTGTATGTTACAGTTAAAAGGGGGATCTTGCTTTTGTTGATTGGTCATGAGTGGGCCACGCTCTTTAAGGTACAGGCGAGGGAGCTGATGAAGCCCGTGCATCCTAAGGAGCTAAAGTGA

Protein sequence

MGYVYSCSAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGNLVFLYVTVKRGILLLLIGHEWATLFKVQARELMKPVHPKELK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26440Spo26440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26440.1Spo26440.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26440.1.utr5p.2Spo26440.1.utr5p.2five_prime_UTR
Spo26440.1.utr5p.1Spo26440.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26440.1.CDS.3Spo26440.1.CDS.3CDS
Spo26440.1.CDS.2Spo26440.1.CDS.2CDS
Spo26440.1.CDS.1Spo26440.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26440.1.exon.4Spo26440.1.exon.4exon
Spo26440.1.exon.3Spo26440.1.exon.3exon
Spo26440.1.exon.2Spo26440.1.exon.2exon
Spo26440.1.exon.1Spo26440.1.exon.1exon


Homology
[Close]
BLAST of Spo26440.1 vs. NCBI nr
Match: gi|902211210|gb|KNA16649.1| (hypothetical protein SOVF_086950 [Spinacia oleracea])

HSP 1 Score: 132.1 bits (331), Expect = 5.800e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 8  SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 67
          SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN
Sbjct: 20 SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 79

Query: 68 L 69
          L
Sbjct: 80 L 80
[Close]
BLAST of Spo26440.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCD9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086950 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.100e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 8  SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 67
          SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN
Sbjct: 20 SAADWKFGAEQFVKMLPDKVHVHWERNKTHKCVCDVAAKFFIFRRAVVLPVLTPLLAPGN 79

Query: 68 L 69
          L
Sbjct: 80 L 80
The following BLAST results are available for this feature:
BLAST of Spo26440.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902211210|gb|KNA16649.1|5.8e-28100.hypothetical protein SOVF_0869... [more]
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BLAST of Spo26440.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RCD9_SPIOL4.1e-28100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo26440.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26440.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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