Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTATATTTTGGTACTGACATATTATGTATTGGTACTCAAGATGATTGTATTTGGATCACTTGTGTCCATGTCATGTTTAGAAACCCTCCCCTTTGCCACCCTCATAGTCATCTAACGACATATTAAGACGACACAAGTCATATTCTCAAGCAACCCCAGGAAAAAAAATGGCTTCCATGATTTTCTCTGACTGTTCATCCTCCACGACTGCTCGTCTTCTTCCACTCCGCTGCCACAAACTCCACCGTAGCTGCAGCGTTCTCTCTTTCTCTCTTCGGGTTTTTTTACCTCTTACCTCCTCAAGGTCTTTCTTACCTTCTCTCTCCTCCTTTCAAGCTCATGTTTCCTCAACTTTTGTTTCAGGTATTAATCCTTCTTTTGTCAAGAAAATTCGTTAATTGATGCAATTAAGATCATCCCTTTTCTCTTTATTGTTTTGTTTGTGCCAATTTAGTATCTGGGTTTTCGTTCTTTTCTGTATACTTTTTTCTGTATTTTTTTTTGGAAATTCATTGGCGCATTTTATCGAACACCTCCAAGGCTAACTGAATTTTTTTTTGCATTTTTCTGTATTAATTTTTTTTTCTGTTGAATTTGATTTGGGCTTGTGGAAATTGGTGGGTTTACTGTGGATTTAACTCAAATTGTTGAGAAATTGTGTTGATGTTGTTGTAAAATTGGAGCTCTGATGTCTAGGTTCCTTCTAAGAGTTCACGATGACATTTGAATTAACTAAGAATTCCGTCCGTGTTTCATGATTATGGCAGTTGAAATGCTGTAGTTTAGGTACTCATTAAAGAAAACATGGAATGACTCTTTGCAAGTTTCTGTTACAGCTAAAATGGCAACCGAGAGTTCTGCAATAGTGATTGATGGTAAGTCGGTGGCGAAGCAAATAAGGGAGGAGATAGCTGTTGAAATAGCGAGAATGAGAGAAGCTACTGGTATTGTTCCGGGGTTGGCTGTGATCCTTGTTGGGGATAGAAAGGACTCTGCAACTTATGTTCGTAATAAGAAGAAAGCTTGTGATGCAGTGGGGATTAATTCTTTCGAAGTAAATTTGCCAGGAGATACAACAGAACAGGAAGTGCTCAACTCTATAACTAGGTTCAATGAGGATCCTTCAGTTCATGGAATACTTGTTCAGTTACCTCTTCCTAAGGTATGCATTGGTTCATCTTGTGTATAAGTTGTGGTTATATCTTGAGACTGAAACTTATTCTGCTATTATTTACTCTGGGGAGAGATTCAAAGATGATTGTTTTATTAGGTCAGTACTATTATGTGTTCTATGCTGACTCTTGTAAAGTAGCGTGTTTGTAGTCTGTGATACATATACCAAAACTCCAGAAAGGTGCTGGTTAAGGTATCTGTCAGAAATTGGTTCTTTACTGTCGTGTTTACCTGTATTTTCCTGGATAATTTTCAATAGGAATTGTCCTCTTGACAGAATAGTTGACAACTTTCTTTTAAACAACATTTACTTTTATGGGATGTTGCCTGAAATGTAGTGTACACCACACTAGAGGAGTGTTTGGTTTGGTGTAAACGTTTTCATGGAAAGCAATTTCCCACTTTCAATCATTTTACATTGTCTGGTTTGGCAAGGGGTGAAAAACAACTTTCCATAACTCCCTCAAAGGTGGAAAACCCATTTCCATTATGAGGAAGGGAAACCACCTTTCTACTTTTCCAACTTACCTCCCTCTTCCTTCTTCCCAACAATCTTCACCACATTTTCCTTTTTCTATGAATTTTTTTTTATAAGGAACCAAATAAAGGAAACTAGTTTGGACTTTTGTTTTTCCTTGGAAATGTTTTCAATGGAATATCATTTTTCACTGAAAACATTTTTCGCCAAACAAAACAAAGCCTAGATATGAGATACATGTTGGCGACTGTCTAATTTCTCTAACATTTATTTCCTGTATTCTGCGGACTCCTTGTCACTTTTTCGAACAAATTATTTTTTGATTGATATGCTGATAAAATTCTTGCTTTCCTTAATGGGTTTTGTAGCATATGAATGAGGAGAAAATTTTGAATGCTGTTGGAATAGAAAAGGATGTTGATGGATTTCACCCTCTGAATATTGGTCGTCTTGCAATGCGGGGTAGAGAACCCTTGTTTGTACCATGTACACCCAAAGGGTGCATAGAGCTATTGCATAGATATGGAATTCAAATAAAAGGGAAAAAGGCAGTTGTGATTGGCCGTAGTAATATAGTTGGGATGCCGGCTGCTCTTTTGCTACAAGTAAGTTCTTTATGTTCGTTCATGTTCTTCCTGTATGCAGGAAATCCATGTCTATATTGAACTTTCCTTTCTTGTTTTTATGGATACTTGCACTCCAACACGTTATATGAACAAACACTTATGTTTGCAGAGGGAAGATGCTACTGTTACTATTGTTCATTCTAGAACAAACAATCCCGAGGATATAATAAAAGAAGCAGATATTATCATTTCTGCTGTAGGACAAGCAAACATGGTTAGGGGTAGCTGGATTAAGCCTGGTGCTGTTATCATCGATGTTGGGATCAATCCAGTTGAGGTAAACCTAGAGCTTCTCATGTGCTCAACTACTTTCTTTCATGTTCAAATAACTTATTGTCTGACATGTTATAATATCCTATCTTCTTTAGATTTCCTATTAATAGAATGGAAATATTGGCAGCATATATATGCACATCCACGAAATCCATGTACCTCCATTATGATCTTTAAACAATAAAATATGGATAGTTAACATTACATTTTAGCACTACAAAAATTAATCGAAAATTCGGAAGTGTCGCCAATAACACTCTTAATGCAGAATAAGTCCTGTTTAGCCTTTTTGAAAAAAATTGAAAGGTTTAGTTTGGACTTTGGAACTTAGAAAACTCAAAAAAATATGTATACGCAGTATTTGTTTCAGAACAGAGGGATAAAACTGATACCAACAGCACTTTTGACATTTAGTTGTCATTTTAAGATCCAATATATTTTAATTTGTGTTTTCTCATGTCAAACATTTTTGCTAAGATTCACTTGTAAAACAGGATCCAGAAAGCCCTCGGGGATATCGGTTAGTTGGAGATGTTTGCTATGAAGAGGTTGTCAAGGTTGCTTCTGCTGTTACCCCTGTTCCTGGAGGTGTTGGTCCAATGACCATTGCAATGCTTCTTTCAAATACTCTCAGTTCAGCAAAAAGGATGCACAATTTCAACTGATAATGCAGTTGATAGTTTCAGATTAGGAAGGTAGAAAACAATTTACATGGTATCACACTCATCAGCCCATGAGTTTGCTACAACTTATTTTTGTTTCCCCCCAAAATTTGTGGGGAAAAGTCACAACAACAATATCCAATATAAAGAACATATTGCTCCCAGATTCCATGAAGAAGTTGGGGCTCCTGTCGGAATTGCCTGTTGTTTTCTTTATTATTGACATTTGCCTGATACAAGACAGTTTGTTGTAAAAGAGAAGATGATTTTAGCTCAGAAGTCTCTGTAATCTGTATGAAAATTATTGGATGTTTTGGTCTAATGTCTCTTCTGATATGTCTATGACTTTATTGTCTTATTGGTAAACAACATACTCCATTAGATTTCCTCCATACATTGAGAGAGCATCATATATTACTAAGCAACTTCTAATGGCAGGGACATTGTAT TTTATATTTTGGTACTGACATATTATGTATTGGTACTCAAGATGATTGTATTTGGATCACTTGTGTCCATGTCATGTTTAGAAACCCTCCCCTTTGCCACCCTCATAGTCATCTAACGACATATTAAGACGACACAAGTCATATTCTCAAGCAACCCCAGGAAAAAAAATGGCTTCCATGATTTTCTCTGACTGTTCATCCTCCACGACTGCTCGTCTTCTTCCACTCCGCTGCCACAAACTCCACCGTAGCTGCAGCGTTCTCTCTTTCTCTCTTCGGGTTTTTTTACCTCTTACCTCCTCAAGGTCTTTCTTACCTTCTCTCTCCTCCTTTCAAGCTCATGTTTCCTCAACTTTTGTTTCAGCTAAAATGGCAACCGAGAGTTCTGCAATAGTGATTGATGGTAAGTCGGTGGCGAAGCAAATAAGGGAGGAGATAGCTGTTGAAATAGCGAGAATGAGAGAAGCTACTGGTATTGTTCCGGGGTTGGCTGTGATCCTTGTTGGGGATAGAAAGGACTCTGCAACTTATGTTCGTAATAAGAAGAAAGCTTGTGATGCAGTGGGGATTAATTCTTTCGAAGTAAATTTGCCAGGAGATACAACAGAACAGGAAGTGCTCAACTCTATAACTAGGTTCAATGAGGATCCTTCAGTTCATGGAATACTTGTTCAGTTACCTCTTCCTAAGCATATGAATGAGGAGAAAATTTTGAATGCTGTTGGAATAGAAAAGGATGTTGATGGATTTCACCCTCTGAATATTGGTCGTCTTGCAATGCGGGGTAGAGAACCCTTGTTTGTACCATGTACACCCAAAGGGTGCATAGAGCTATTGCATAGATATGGAATTCAAATAAAAGGGAAAAAGGCAGTTGTGATTGGCCGTAGTAATATAGTTGGGATGCCGGCTGCTCTTTTGCTACAAAGGGAAGATGCTACTGTTACTATTGTTCATTCTAGAACAAACAATCCCGAGGATATAATAAAAGAAGCAGATATTATCATTTCTGCTGTAGGACAAGCAAACATGGTTAGGGGTAGCTGGATTAAGCCTGGTGCTGTTATCATCGATGTTGGGATCAATCCAGTTGAGGATCCAGAAAGCCCTCGGGGATATCGGTTAGTTGGAGATGTTTGCTATGAAGAGGTTGTCAAGGTTGCTTCTGCTGTTACCCCTGTTCCTGGAGGTGTTGGTCCAATGACCATTGCAATGCTTCTTTCAAATACTCTCAGTTCAGCAAAAAGGATGCACAATTTCAACTGATAATGCAGTTGATAGTTTCAGATTAGGAAGGTAGAAAACAATTTACATGGTATCACACTCATCAGCCCATGAGTTTGCTACAACTTATTTTTGTTTCCCCCCAAAATTTGTGGGGAAAAGTCACAACAACAATATCCAATATAAAGAACATATTGCTCCCAGATTCCATGAAGAAGTTGGGGCTCCTGTCGGAATTGCCTGTTGTTTTCTTTATTATTGACATTTGCCTGATACAAGACAGTTTGTTGTAAAAGAGAAGATGATTTTAGCTCAGAAGTCTCTGTAATCTGTATGAAAATTATTGGATGTTTTGGTCTAATGTCTCTTCTGATATGTCTATGACTTTATTGTCTTATTGGTAAACAACATACTCCATTAGATTTCCTCCATACATTGAGAGAGCATCATATATTACTAAGCAACTTCTAATGGCAGGGACATTGTAT ATGGCTTCCATGATTTTCTCTGACTGTTCATCCTCCACGACTGCTCGTCTTCTTCCACTCCGCTGCCACAAACTCCACCGTAGCTGCAGCGTTCTCTCTTTCTCTCTTCGGGTTTTTTTACCTCTTACCTCCTCAAGGTCTTTCTTACCTTCTCTCTCCTCCTTTCAAGCTCATGTTTCCTCAACTTTTGTTTCAGCTAAAATGGCAACCGAGAGTTCTGCAATAGTGATTGATGGTAAGTCGGTGGCGAAGCAAATAAGGGAGGAGATAGCTGTTGAAATAGCGAGAATGAGAGAAGCTACTGGTATTGTTCCGGGGTTGGCTGTGATCCTTGTTGGGGATAGAAAGGACTCTGCAACTTATGTTCGTAATAAGAAGAAAGCTTGTGATGCAGTGGGGATTAATTCTTTCGAAGTAAATTTGCCAGGAGATACAACAGAACAGGAAGTGCTCAACTCTATAACTAGGTTCAATGAGGATCCTTCAGTTCATGGAATACTTGTTCAGTTACCTCTTCCTAAGCATATGAATGAGGAGAAAATTTTGAATGCTGTTGGAATAGAAAAGGATGTTGATGGATTTCACCCTCTGAATATTGGTCGTCTTGCAATGCGGGGTAGAGAACCCTTGTTTGTACCATGTACACCCAAAGGGTGCATAGAGCTATTGCATAGATATGGAATTCAAATAAAAGGGAAAAAGGCAGTTGTGATTGGCCGTAGTAATATAGTTGGGATGCCGGCTGCTCTTTTGCTACAAAGGGAAGATGCTACTGTTACTATTGTTCATTCTAGAACAAACAATCCCGAGGATATAATAAAAGAAGCAGATATTATCATTTCTGCTGTAGGACAAGCAAACATGGTTAGGGGTAGCTGGATTAAGCCTGGTGCTGTTATCATCGATGTTGGGATCAATCCAGTTGAGGATCCAGAAAGCCCTCGGGGATATCGGTTAGTTGGAGATGTTTGCTATGAAGAGGTTGTCAAGGTTGCTTCTGCTGTTACCCCTGTTCCTGGAGGTGTTGGTCCAATGACCATTGCAATGCTTCTTTCAAATACTCTCAGTTCAGCAAAAAGGATGCACAATTTCAACTGA MASMIFSDCSSSTTARLLPLRCHKLHRSCSVLSFSLRVFLPLTSSRSFLPSLSSFQAHVSSTFVSAKMATESSAIVIDGKSVAKQIREEIAVEIARMREATGIVPGLAVILVGDRKDSATYVRNKKKACDAVGINSFEVNLPGDTTEQEVLNSITRFNEDPSVHGILVQLPLPKHMNEEKILNAVGIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYGIQIKGKKAVVIGRSNIVGMPAALLLQREDATVTIVHSRTNNPEDIIKEADIIISAVGQANMVRGSWIKPGAVIIDVGINPVEDPESPRGYRLVGDVCYEEVVKVASAVTPVPGGVGPMTIAMLLSNTLSSAKRMHNFN Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo25244.1 vs. NCBI nr
Match: gi|902175492|gb|KNA08607.1| (hypothetical protein SOVF_161080 isoform A [Spinacia oleracea]) HSP 1 Score: 708.4 bits (1827), Expect = 6.600e-201 Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 1
BLAST of Spo25244.1 vs. NCBI nr
Match: gi|902175493|gb|KNA08608.1| (hypothetical protein SOVF_161080 isoform B [Spinacia oleracea]) HSP 1 Score: 702.6 bits (1812), Expect = 3.600e-199 Identity = 365/369 (98.92%), Postives = 365/369 (98.92%), Query Frame = 1
BLAST of Spo25244.1 vs. NCBI nr
Match: gi|902204958|gb|KNA15027.1| (hypothetical protein SOVF_101840 isoform A [Spinacia oleracea]) HSP 1 Score: 686.4 bits (1770), Expect = 2.700e-194 Identity = 353/365 (96.71%), Postives = 357/365 (97.81%), Query Frame = 1
BLAST of Spo25244.1 vs. NCBI nr
Match: gi|731311947|ref|XP_010671911.1| (PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 620.9 bits (1600), Expect = 1.400e-174 Identity = 322/365 (88.22%), Postives = 338/365 (92.60%), Query Frame = 1
BLAST of Spo25244.1 vs. NCBI nr
Match: gi|645253889|ref|XP_008232785.1| (PREDICTED: bifunctional protein FolD 4, chloroplastic isoform X1 [Prunus mume]) HSP 1 Score: 535.8 bits (1379), Expect = 5.900e-149 Identity = 285/366 (77.87%), Postives = 317/366 (86.61%), Query Frame = 1
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161080 PE=3 SV=1) HSP 1 Score: 708.4 bits (1827), Expect = 4.600e-201 Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 1
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161080 PE=3 SV=1) HSP 1 Score: 702.6 bits (1812), Expect = 2.500e-199 Identity = 365/369 (98.92%), Postives = 365/369 (98.92%), Query Frame = 1
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8C6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101840 PE=3 SV=1) HSP 1 Score: 686.4 bits (1770), Expect = 1.900e-194 Identity = 353/365 (96.71%), Postives = 357/365 (97.81%), Query Frame = 1
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D378_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005850 PE=3 SV=1) HSP 1 Score: 620.9 bits (1600), Expect = 9.700e-175 Identity = 322/365 (88.22%), Postives = 338/365 (92.60%), Query Frame = 1
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Match: M5X1L5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007647mg PE=3 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 4.100e-149 Identity = 282/367 (76.84%), Postives = 315/367 (85.83%), Query Frame = 1
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Match: FOLD4_ARATH (Bifunctional protein FolD 4, chloroplastic OS=Arabidopsis thaliana GN=FOLD4 PE=1 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 6.700e-145 Identity = 268/369 (72.63%), Postives = 313/369 (84.82%), Query Frame = 1
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Match: FOLD3_ARATH (Bifunctional protein FolD 3, chloroplastic OS=Arabidopsis thaliana GN=FOLD3 PE=3 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 1.100e-110 Identity = 215/364 (59.07%), Postives = 266/364 (73.08%), Query Frame = 1
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Match: FOLD1_ARATH (Bifunctional protein FolD 1, mitochondrial OS=Arabidopsis thaliana GN=FOLD1 PE=2 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 1.200e-109 Identity = 191/292 (65.41%), Postives = 235/292 (80.48%), Query Frame = 1
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Match: FOLD2_ARATH (Bifunctional protein FolD 2 OS=Arabidopsis thaliana GN=FOLD2 PE=2 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 9.500e-107 Identity = 184/293 (62.80%), Postives = 234/293 (79.86%), Query Frame = 1
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Match: FOLD_MAGMM (Bifunctional protein FolD OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=folD PE=3 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 5.100e-84 Identity = 163/290 (56.21%), Postives = 205/290 (70.69%), Query Frame = 1
BLAST of Spo25244.1 vs. TAIR (Arabidopsis)
Match: AT4G00620.1 (Amino acid dehydrogenase family protein) HSP 1 Score: 515.0 bits (1325), Expect = 3.800e-146 Identity = 268/369 (72.63%), Postives = 313/369 (84.82%), Query Frame = 1
BLAST of Spo25244.1 vs. TAIR (Arabidopsis)
Match: AT4G00600.1 (Amino acid dehydrogenase family protein) HSP 1 Score: 401.4 bits (1030), Expect = 6.100e-112 Identity = 215/364 (59.07%), Postives = 266/364 (73.08%), Query Frame = 1
BLAST of Spo25244.1 vs. TAIR (Arabidopsis)
Match: AT2G38660.1 (Amino acid dehydrogenase family protein) HSP 1 Score: 397.9 bits (1021), Expect = 6.700e-111 Identity = 191/292 (65.41%), Postives = 235/292 (80.48%), Query Frame = 1
BLAST of Spo25244.1 vs. TAIR (Arabidopsis)
Match: AT3G12290.1 (Amino acid dehydrogenase family protein) HSP 1 Score: 388.3 bits (996), Expect = 5.300e-108 Identity = 184/293 (62.80%), Postives = 234/293 (79.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25244.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25244.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25244.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25244.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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