Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTCTACATCGAGCTCTTCTTTGTTTCCTTTACCTTCGTATAATGTATATTCTCGTTCTTCCATATTTTCTGGTACTATTACGTCGAATTCTTGGATTTTTAGGCAGAGGAAAATTCTNTCTCTACATCGAGCTCTTCTTTGTTTCCTTTACCTTCGTACAATGTATATTCTCGTTCTTCCATATTTTCTGGTACTATTACGTCGAATTCTTGGATTTTTAGGCAGAGGAAAATTCTTTGTTCCTGTATGACACCTTCAAGAAATGTGAACGAGGGAATTTCCCCTTTCAAATTGAGTGTAAGTACTTCAATTTTTGTGATTTTGCAGTTAGCAATCCTATGTCAATTAGGTTATAGCTTATAGATTCTATATGTGTAATTATTGCTGTGATTTGGTGTTACCCCTCCTACTGTCCTATTTGCAATTCGCATTTACATATCAGAGCCGCTAATGGAAATGATATAGATGAGATTCAATCACACGTTTTGGTTAGTTTATCAGCTGAGCTAGCTGACATCCACATTTGCATTTGTTTTCTCTATTTTTTGCTGGGATTCTTGGATTATGGATTATATGATATGGATATAGGAATATGGTTGTTATTTCACTTATTTGATGTTTTTGTTTTTCCACATTTATTAGTTGGTACTTTTCAGCTTTGGTTTATTTCTATTTTGTTTTCCTTCACTTCAGTTTTCAGTAAAGAATTTTCTGATAATTTTGTTTTTTTGCTGGGTCTTGATTCAATGTTTTAAACATGTTTCTTGGTATCAGGATTCTTCTGATATGAAGATTATAAACTCAATTGATGAACCTGAGGATGATTCGGATGTGCTTATCGAGTGTAGAGATGTGTACAAGTCATTTGGGGATAAACACATACTAAGAGGTGTAAGCTTCAAGGTGCAAATAACCTTCTCTATTTATTGTAATCCATGATTGGATCTAATGACTTTGTACTCATATTCCTAAAAATGTTTCCTGGTCTTTTCAACTGCTTGTAGATCAGACATGGAGAAGCAGTTGGAATAATTGGACCTTCTGGTACAGGAAAATCCACCATTTTAAAAATTATTGCTGGACTTCTTGCTCCAGACAAGGTGAACAATCTTACTATGATCCTTTCGTACTTGCTGTTTAGTCTGTTACATGCAAAATCTAAGTCTGAGTACTGTGATAAATAGGGCGAGGTCTACATTCGAGGGAAAAAGAGAGAAGGATTGATCAGTGATGAGGAAGTCTCAATATCTGGTCTTCGTATTGGCTTGGTAATTGTTCATTGTTATTAATTATATTGCATCGTAGAAGTTGTATATGTATTTCCAATGCTCATTTTTGTACTGCTTGGTTGACAGGTCTTTCAGAGTGCTGCATTATTTGACTCTTTAACTGTGCGTGAAAATGTTGGTTTCCTTCTGTAAGAGGCTCTCCTTGTTATTCCTCATCAGTTATAATTCTTCTTAGAGTTTCTTATGGGTTTGGTACTGCAACTTATTGCTTGCCCACTTTTCACATTTATCCGTGGTGAATTAGGTATGAAAATTCTAGAATGCCGGATGATCAAATTTCTGAGCTTGTAACTGAAACTTTAGCCGCAGTAGGACTGAAGGTAAGAATTTAGTAATAAAAATGGTAAACTTTAATTCTTTGTTAGTAGTCTAGCTTGTCCATGTCAATAATTGCTACTTGGGTTTTTGCATTGTAATGTGGTTATTCTGAAATAGACTAGAAAATATTGTTTACTTGTAGGGGGTCGAGGAGCGGTTACCTTCTGAACTGTCAGGAGGGATGAAAAAACGAGTTGCCTTGGCTCGTTCAATCATCTTTGACATCACAAAAGATACTGTAGAACCAGAGGTATGTCTAGTACCCTATAGTAAAACGTTCATAATCACAATATTACTGGAAGCATATCAAGTACGGAACATTCTGCTATAATGAATAATCTTACATTACCATTAATGTCAAGTCTGTTACAGATTGGTTGTTTAGTGGTGCTTGGACCTTTTCTGCATTTCTAAGGCCGTAAGATATACTGAGATAGCTTTGAAGTATCCTGTGTGGCTGTGTCTTCACGTTTTTCTCAAATTTGTAGTTTTTGTTGTACTTTGTTATGAACATCCAAGATATGAGAGTGTTGTTGCAAATCTTGTGGTGCCATACTGCCATAAATCTGCTAAATTTTTTCCCTGTGTTTGCAATGCATTCGCCATAATGGAGTTATAAGAACTGTTTGTCAGAACTAGTTTCTGACTTNCCATACTGCCATAAATCTGCTAAATTTTTTCCCTGTGTTTTCAATGCATTCGCCATAATGGAGTTATAAGAACTGTTTGTCAGAACTAGTTTCTGACTTTTTGTTTATTGCTGAGGAGTTTTGTCTCTCCCACTTAGATATTTCTTGACCTGACCCCACCTTTTCCAGGCTAAAAAATCCCAATTATTTTCCCTTGGTTTCTCGTCTATCTCAAGCTCTGATTTTCAGGGAAGAGTTTAGTGTAGTCTGCTCTTCTGGAAGTAGAAATGTTACCCAGTTGTTACCTACAACTTCTAGTTTAAAGTTTCCTTTCAAACTTCTTGAAGAAGTTTGATACACTGTTTCCATCTCTTTGGTAAAGTGGTTGCTTCCCTACTGTTTTTGGGGCAGGTGCTTTTGTATGACGAGCCAACGGCTGGACTTGATCCGATTGCATCAACGGTTGTTGAAGACCTGATCCGATCAGTTCATATAAAAGGTGAAGATGCAATGGGATTGGCTGGGAAGGTTTCATCATTTATAGTTGTTACTCACCAACATAGTACCATCGAAAGAGCAGTTGATAGGTACATGTCTCTTTCAGTCTACTACTTTGCTTGTCATTAGAGTTTCAATCCATACCATATCACTGATGATCTGTATTTGGTCCAGGTTGATTTTCCTGTATGAGGGGAAGATTGTTTGGGAAGGACTGACTCATGAATTTACCACCTCAACTAGTCCCATTGTTCAACAGGTAATTATCATACCCGTAGTTTGAAATTCAGAGTTTTGTGTATGTCTCAACTTCTGCTTTAAGGTTATGTTTGGTTGGGTGTAAAACATTTTTAGTGTAAAATGATTTTCATGGAAAACAATTTACAATTGAAAACACAACTCCAAAATTAGTTTTCCGTTGTTTGGTTCCATGTAAGAAAAATGATGAAACGGAAGGAAAAAGAAAGTGAAAGTAAGCAGGTAGTGAAAGGAGTGTACAAAAGAGATGAGGAAAAGGAAGGAAAAAAGTTTTCCCTTCATTTTGAACGGAAAATGGTTTTCCATCATTGGGGGAGCAATTTTACTCATAGGGAAAATGGTTTCACACTCCTTTGCAAACCAAACAATGTAAAATTGAAGATAGAGGAAAACTATTTTCCAGGAAAATGTTTTACTCCCTACCAAACGGAGCCTAAGGGACTTGAGACGAGTTAGATTGTAAAACATAAAATAAACTCGAACTCTACAAAGTGAAGTATTTTAAATGGCAAGCTTGAGTACTACATTCATTTTGTTGGTGCATGTCCAGTTTGCTTCAGGGAGTTTGGAAGGACCGATCAAATACTAGCAAAGGCTTTCTCGGAAAACTCAAGTTTGCTATTGGGATGTCTAAACAGAAAGATGTTGCATTTTCTAAGAGAAGATGCTGGCCATTTGTGTGGTTGGTCTTCTGCAAACAGAAGAATACAACATAACCAGAAACCTTTTAAACGAGGATTGTCCTTACGATTGCTTCAAATCTCGGATCTGTTGCTTAAGATGCAACCTTTACACAGATTTGGCAATCATCGCTGAAGATGGGAATGCAAATCCAACTACGTAG ATGCTCTCTACATCGAGCTCTTCTTTGTTTCCTTTACCTTCGTACAATGTATATTCTCGTTCTTCCATATTTTCTGGTACTATTACGTCGAATTCTTGGATTTTTAGGCAGAGGAAAATTCTTTGTTCCTGTATGACACCTTCAAGAAATGTGAACGAGGGAATTTCCCCTTTCAAATTGAGTGATTCTTCTGATATGAAGATTATAAACTCAATTGATGAACCTGAGGATGATTCGGATGTGCTTATCGAGTGTAGAGATGTGTACAAGTCATTTGGGGATAAACACATACTAAGAGGTATCAGACATGGAGAAGCAGTTGGAATAATTGGACCTTCTGGTACAGGAAAATCCACCATTTTAAAAATTATTGCTGGACTTCTTGCTCCAGACAAGGGCGAGGTCTACATTCGAGGGAAAAAGAGAGAAGGATTGATCAGTGATGAGGAAGTCTCAATATCTGGTCTTCGTATTGGCTTGGTCTTTCAGAGTGCTGCATTATTTGACTCTTTAACTGTGCGTGAAAATGTTGGTTTCCTTCTGTATGAAAATTCTAGAATGCCGGATGATCAAATTTCTGAGCTTGTAACTGAAACTTTAGCCGCAGTAGGACTGAAGGGGGTCGAGGAGCGGTTACCTTCTGAACTGTCAGGAGGGATGAAAAAACGAGTTGCCTTGGCTCGTTCAATCATCTTTGACATCACAAAAGATACTGTAGAACCAGAGGTGCTTTTGTATGACGAGCCAACGGCTGGACTTGATCCGATTGCATCAACGGTTGTTGAAGACCTGATCCGATCAGTTCATATAAAAGGTGAAGATGCAATGGGATTGGCTGGGAAGGTTTCATCATTTATAGTTGTTACTCACCAACATAGTACCATCGAAAGAGCAGTTGATAGGTTGATTTTCCTGTATGAGGGGAAGATTGTTTGGGAAGGACTGACTCATGAATTTACCACCTCAACTAGTCCCATTGTTCAACAGTTTGCTTCAGGGAAGAAGATGCTGGCCATTTGTGTGGTTGGTCTTCTGCAAACAGAAGAATACAACATAACCAGAAACCTTTTAAACGAGGATTGTCCTTACGATTGCTTCAAATCTCGGATCTGTTGCTTAAGATGCAACCTTTACACAGATTTGGCAATCATCGCTGAAGATGGGAATGCAAATCCAACTACGTAG ATGCTCTCTACATCGAGCTCTTCTTTGTTTCCTTTACCTTCGTACAATGTATATTCTCGTTCTTCCATATTTTCTGGTACTATTACGTCGAATTCTTGGATTTTTAGGCAGAGGAAAATTCTTTGTTCCTGTATGACACCTTCAAGAAATGTGAACGAGGGAATTTCCCCTTTCAAATTGAGTGATTCTTCTGATATGAAGATTATAAACTCAATTGATGAACCTGAGGATGATTCGGATGTGCTTATCGAGTGTAGAGATGTGTACAAGTCATTTGGGGATAAACACATACTAAGAGGTATCAGACATGGAGAAGCAGTTGGAATAATTGGACCTTCTGGTACAGGAAAATCCACCATTTTAAAAATTATTGCTGGACTTCTTGCTCCAGACAAGGGCGAGGTCTACATTCGAGGGAAAAAGAGAGAAGGATTGATCAGTGATGAGGAAGTCTCAATATCTGGTCTTCGTATTGGCTTGGTCTTTCAGAGTGCTGCATTATTTGACTCTTTAACTGTGCGTGAAAATGTTGGTTTCCTTCTGTATGAAAATTCTAGAATGCCGGATGATCAAATTTCTGAGCTTGTAACTGAAACTTTAGCCGCAGTAGGACTGAAGGGGGTCGAGGAGCGGTTACCTTCTGAACTGTCAGGAGGGATGAAAAAACGAGTTGCCTTGGCTCGTTCAATCATCTTTGACATCACAAAAGATACTGTAGAACCAGAGGTGCTTTTGTATGACGAGCCAACGGCTGGACTTGATCCGATTGCATCAACGGTTGTTGAAGACCTGATCCGATCAGTTCATATAAAAGGTGAAGATGCAATGGGATTGGCTGGGAAGGTTTCATCATTTATAGTTGTTACTCACCAACATAGTACCATCGAAAGAGCAGTTGATAGGTTGATTTTCCTGTATGAGGGGAAGATTGTTTGGGAAGGACTGACTCATGAATTTACCACCTCAACTAGTCCCATTGTTCAACAGTTTGCTTCAGGGAAGAAGATGCTGGCCATTTGTGTGGTTGGTCTTCTGCAAACAGAAGAATACAACATAACCAGAAACCTTTTAAACGAGGATTGTCCTTACGATTGCTTCAAATCTCGGATCTGTTGCTTAAGATGCAACCTTTACACAGATTTGGCAATCATCGCTGAAGATGGGAATGCAAATCCAACTACGTAG MLSTSSSSLFPLPSYNVYSRSSIFSGTITSNSWIFRQRKILCSCMTPSRNVNEGISPFKLSDSSDMKIINSIDEPEDDSDVLIECRDVYKSFGDKHILRGIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGKKREGLISDEEVSISGLRIGLVFQSAALFDSLTVRENVGFLLYENSRMPDDQISELVTETLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDITKDTVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGEDAMGLAGKVSSFIVVTHQHSTIERAVDRLIFLYEGKIVWEGLTHEFTTSTSPIVQQFASGKKMLAICVVGLLQTEEYNITRNLLNEDCPYDCFKSRICCLRCNLYTDLAIIAEDGNANPTT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo25212.1 vs. NCBI nr
Match: gi|902238563|gb|KNA25225.1| (hypothetical protein SOVF_008460 [Spinacia oleracea]) HSP 1 Score: 637.5 bits (1643), Expect = 1.500e-179 Identity = 332/337 (98.52%), Postives = 332/337 (98.52%), Query Frame = 1
BLAST of Spo25212.1 vs. NCBI nr
Match: gi|731326231|ref|XP_010673915.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 553.9 bits (1426), Expect = 2.300e-154 Identity = 290/340 (85.29%), Postives = 309/340 (90.88%), Query Frame = 1
BLAST of Spo25212.1 vs. NCBI nr
Match: gi|641821889|gb|KDO41486.1| (hypothetical protein CISIN_1g016804mg [Citrus sinensis]) HSP 1 Score: 476.1 bits (1224), Expect = 6.000e-131 Identity = 254/343 (74.05%), Postives = 292/343 (85.13%), Query Frame = 1
BLAST of Spo25212.1 vs. NCBI nr
Match: gi|567871955|ref|XP_006428567.1| (hypothetical protein CICLE_v10012081mg [Citrus clementina]) HSP 1 Score: 473.4 bits (1217), Expect = 3.900e-130 Identity = 252/343 (73.47%), Postives = 292/343 (85.13%), Query Frame = 1
BLAST of Spo25212.1 vs. NCBI nr
Match: gi|694420148|ref|XP_009337998.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X2 [Pyrus x bretschneideri]) HSP 1 Score: 471.5 bits (1212), Expect = 1.500e-129 Identity = 251/345 (72.75%), Postives = 291/345 (84.35%), Query Frame = 1
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0E3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008460 PE=4 SV=1) HSP 1 Score: 637.5 bits (1643), Expect = 1.100e-179 Identity = 332/337 (98.52%), Postives = 332/337 (98.52%), Query Frame = 1
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FFZ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g075120 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 1.600e-154 Identity = 290/340 (85.29%), Postives = 309/340 (90.88%), Query Frame = 1
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Match: A0A067DSA7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016804mg PE=4 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 4.200e-131 Identity = 254/343 (74.05%), Postives = 292/343 (85.13%), Query Frame = 1
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Match: V4SMC4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012081mg PE=4 SV=1) HSP 1 Score: 473.4 bits (1217), Expect = 2.700e-130 Identity = 252/343 (73.47%), Postives = 292/343 (85.13%), Query Frame = 1
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Match: F6GX29_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00290 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.900e-128 Identity = 240/303 (79.21%), Postives = 269/303 (88.78%), Query Frame = 1
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Match: TGD3_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 1.100e-127 Identity = 243/335 (72.54%), Postives = 281/335 (83.88%), Query Frame = 1
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Match: MKL_MYCTU (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=mkl PE=1 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 5.500e-36 Identity = 88/260 (33.85%), Postives = 141/260 (54.23%), Query Frame = 1
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Match: MKL_MYCTO (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=mkl PE=3 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 5.500e-36 Identity = 88/260 (33.85%), Postives = 141/260 (54.23%), Query Frame = 1
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Match: MKL_MYCBO (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=mkl PE=3 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 5.500e-36 Identity = 88/260 (33.85%), Postives = 141/260 (54.23%), Query Frame = 1
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Match: MKL_MYCLE (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae (strain TN) GN=mkl PE=3 SV=2) HSP 1 Score: 152.5 bits (384), Expect = 9.500e-36 Identity = 87/260 (33.46%), Postives = 141/260 (54.23%), Query Frame = 1
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Match: AT1G65410.1 (non-intrinsic ABC protein 11) HSP 1 Score: 458.0 bits (1177), Expect = 5.900e-129 Identity = 243/335 (72.54%), Postives = 281/335 (83.88%), Query Frame = 1
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Match: AT1G67940.1 (non-intrinsic ABC protein 3) HSP 1 Score: 103.6 bits (257), Expect = 2.800e-22 Identity = 82/265 (30.94%), Postives = 141/265 (53.21%), Query Frame = 1
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Match: AT2G47000.1 (ATP binding cassette subfamily B4) HSP 1 Score: 92.0 bits (227), Expect = 8.500e-19 Identity = 75/258 (29.07%), Postives = 126/258 (48.84%), Query Frame = 1
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Match: AT1G28010.1 (P-glycoprotein 14) HSP 1 Score: 91.3 bits (225), Expect = 1.500e-18 Identity = 73/247 (29.55%), Postives = 124/247 (50.20%), Query Frame = 1
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Match: AT5G46540.1 (P-glycoprotein 7) HSP 1 Score: 90.1 bits (222), Expect = 3.200e-18 Identity = 76/252 (30.16%), Postives = 126/252 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25212.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25212.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25212.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25212.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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