Spo24716.1 (mRNA)

Overview
NameSpo24716.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 55170564 .. 55174045 (+)
Sequence length885
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCCGTAAAAAATAAAGTAAAATAAGAAATGACCCGTTGTTTAACTCAACGGTCTCTACCTTCCTTCTTTTGAGGAAGACCCTCGTCAAGCCTAATTCCTTCCCTGCTCGTCTCCTTCCTTCACTTATGCTCAGCCAACAAATTCCTTCCCTTCTCGTCGATCAACGCCGCTTCCAGTTCCTCTCAACTCCGTCGCCTCTGTCGCTACCATGGCTTACGCCTCCGCCTTCCAGATCTGCTACCTTCTCTCTCTAAAAAATTGCAACAAGATATTTTGTGGGGTTTATCTCTCTCCTCTCATTTCCCTCATCGATCGTCACCGCTACCCACACAACCAGAAGCTTATTCAAGTCTCCCTATTTGAAGAAATCGTTCATTTTACGTGATTCAATCTTCGAATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGTAATTCCTCTTTCTCTATGTGATTCAATCTTCGTTTAGTTTCATTTTGATTTAAAAATTCCTGTTAATATGGTCAAATCAGATGAAACAATTCCTTTTTAGCATTTAGTTTTATTCTTTTCGTTTTTGCTCTTATTTTAGTAGTTCTTCTTTTTGCTTCTTTGTTTTTGGGTTGTAATAAGACATGTACTAGTTCTGCATTTGCTATTAGGTTAGCTGAATTTATAAGAAAGGTAAGAATTTCTTTGTTTAGTATGTGGTGATAGTGTTTTGCGTTTTTTATTTTTGTTGAGGTTCAGTGATTGTCCTATGTGCTTGAACTGCTTGTAATATGTGATTTCTTTCTGTAAATCGTTTTCCTTCTTAATGCATATGCTTATGACTTGCAAGTTATATTTGCTGTTTTTCGAGCTTGTTATGAGCTTCTAATTAGAAAGAAAAAGGTAAACCTTAAGAGAAACTGGGCTGAGAAACCCTCGTATAGGTCGGGCTTGTCTATTGAGCTTGAGCTTGGTGTTTAGGCTTCAATCAGGCTGGTTATGTCATTCGTCGTAGAGAGAGTTGGTGGTTAGAGAGAGCTGGTGGTTGAGGACTTGAGGGATAAGAGAAGTTACTGGATTTCTAGATTCTTTTGGCCAAGTAATGTCAAGCCCCTAATGATTTTCTAGTTGCCGAAACATGTATTACTCAATGAAAGTTTGAACAATTCTACTCTCTAAATTCTTGAAATTCTAAATGTAAATTATAGTAATACGACTATGAATACTACAGGAGCAACTTATTTTAGTAGAGCAGTTAGGTCACCAACTTTTCTAGGTAAATTACACCCTTCAACCCTTTACTAATCATTGAATTATGAGAAATGGAAAGGATCCAATATTGACTTTATTGCAACTCTGTTGCAAACGTCTGCCAGTTCTATGTAAATGCTGTGAAATATTGTAACTCTGGAAACTGATTATATGTTTATGAATCCTTTTAGTTGTTTACTTGTTCATTAGGTGAAATCATCCGTAATACATGGAAAAGTCATTGCCTTCTTATATCTAACGATATTTTATCTTCTTTTAATATCTACTTATAAGATCTGTATAGTCGTCTTTAGTTGAACTGAGCAGTTATTTATTTCAATGCTCTATGTGTTTTGTTCCAGGCCAGTGTAGATTTAAAGCACCGTTACTCATCCTAGTATAAGAGACAATGATCAAAAAAACGGACGGATTATTTATAATGGTTAGTTTTTTTTAAATGTGTTTTTAGTTGACTGTTTTTTTTATGTCATCAAGTGGTGTTACGTATATTGGTGGTTAACACAACCCCTTGAATAGTTTGCTCTGCCCTTGATGATATATCTGCTTTGGAGAGCATGGAATTGTTAAATTTTTAGCACCCTAAGGGTGCCCTTAATTGTATTGGAGTGCACAACTTGTACTATAAAACCAAAAGGCTATTATTTGATCAAATTTATTAAATTTTCAATTCTATTTGCTAATTTCAATTCCTCCCTTTTCTCCCCCCATGAGTTGTTCGTGATTGTTTGATGTCTGTGAATCAGTCATACTTCTATGCTGAAAGTAAGTTTTGTAGTGTGGATGAGTTTCAAAACTCTTTACCTAATTATATAAGATTGAAATCGTAGTGAAGTTTGTTTTGCTTTCCAGCTGCCTATCATAAAGGCAACGTAGCTGCTGGGTTTGTCTTGTTGCAGTTGTGTGTTGCTGCTGGGTTTCATTTTTGTTGTGGTGCTGAGTGCTCCTTTCAGTTATGAAGTTGGTGGTACAATTGAGAAGTTGCTGCCTACTTCTATATTTTTTTGTTCAAGCTTGGCCAGAGTTGACTGTTTGTGTATGCAATTGTCTTTGAGCGCTTGTTGCTCCATAGCTGCTTTGGTTGGTTGTATTATTTGATGTTTTGTTTTCCTTTTGATTTGGGGTGGAAATTACTTGTGTACATACATTTTTGTTACGTTAATAAATTTCTTACTTACAAAAAAAAAAGTGAGGTAAACCATAGAGTTCATGTGTACAGAGTATTAGAATTTAGATTGTAATATTGAATAGGACTTTAGCAAAGTAAATGGGGAAAGTATGATTTTTTTTTTGGTCTGTTCAATTTGTTTGTTACTTTTTCTGCTTTTGTTCTTTGTTTGGATGACATACTTTATGCCTTGCACCTTGCTTTTTTGACTTGAATGTCGCTTTGGTGGACATATTTTGACCTTTTAGTGAATGACCAACACCTGAATAATGTTATTTTGGCACTTACATAAGTATTTCTACAACTTTGGCAATAAAGGTCCTCTCACGTGTGTAGCTTTATTGATTAAAGGTGTGCGACATAGCGCCTGGCTGTCATGCCATTAAGGAAGAATTCGTTTACAATAGTTTTTTGCTACGTACGTTGTTGTAGATGATAATGTTCTTAAATTATTCTAGCATGTTTCTTTTGTCTATTACTTTCTTATCCTTATAGTTCTTTTCTCCGTTGTTTTTTCCAGGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGGTTTGTTGCTAGTTGGTTTATATGTGGAATGGATTTGTTACAGTTTCCTTTAACTTTGCTTATGTGACCTATATGACTTATGTGACAAATTTTATGGAACATGTAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAGAGTTGGAGGCGAACATATGTTTGTGCCCGCATTGCTAAGACTTATTAATGTCAATTTGTTTAATCTTGTCACAATTGTACTCAATTTTAAGCCTTATTTATTTTGTCATTTTTATATTTTTGGAGATTACAGTTGATGTAAAGTGTGAAATAATTTTTTTTTGTAATTGTAAGAATTATTTGGAATTACCAAATTGGTTTATGCTATTGTTTTTTTAAGAAAAATAATGATAAGA

mRNA sequence

CTTTCCCGTAAAAAATAAAGTAAAATAAGAAATGACCCGTTGTTTAACTCAACGGTCTCTACCTTCCTTCTTTTGAGGAAGACCCTCGTCAAGCCTAATTCCTTCCCTGCTCGTCTCCTTCCTTCACTTATGCTCAGCCAACAAATTCCTTCCCTTCTCGTCGATCAACGCCGCTTCCAGTTCCTCTCAACTCCGTCGCCTCTGTCGCTACCATGGCTTACGCCTCCGCCTTCCAGATCTGCTACCTTCTCTCTCTAAAAAATTGCAACAAGATATTTTGTGGGGTTTATCTCTCTCCTCTCATTTCCCTCATCGATCGTCACCGCTACCCACACAACCAGAAGCTTATTCAAGTCTCCCTATTTGAAGAAATCGTTCATTTTACGTGATTCAATCTTCGAATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGCCAGTGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAGAGTTGGAGGCGAACATATGTTTGTGCCCGCATTGCTAAGACTTATTAATGTCAATTTGTTTAATCTTGTCACAATTGTACTCAATTTTAAGCCTTATTTATTTTGTCATTTTTATATTTTTGGAGATTACAGTTGATGTAAAGTGTGAAATAATTTTTTTTTGTAATTGTAAGAATTATTTGGAATTACCAAATTGGTTTATGCTATTGTTTTTTTAAGAAAAATAATGATAAGA

Coding sequence (CDS)

ATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGCCAGTGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAG

Protein sequence

MHSIFVIQFLFAWPVFKWSTTGDRQTNRLWFIRISHTRDMKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24716Spo24716gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24716.1Spo24716.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24716.1.exon.1Spo24716.1.exon.1exon
Spo24716.1.exon.2Spo24716.1.exon.2exon
Spo24716.1.exon.3Spo24716.1.exon.3exon
Spo24716.1.exon.4Spo24716.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24716.1.utr5p.1Spo24716.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24716.1.CDS.1Spo24716.1.CDS.1CDS
Spo24716.1.CDS.2Spo24716.1.CDS.2CDS
Spo24716.1.CDS.3Spo24716.1.CDS.3CDS
Spo24716.1.CDS.4Spo24716.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24716.1.utr3p.1Spo24716.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo24716.1 vs. NCBI nr
Match: gi|902191580|gb|KNA11879.1| (hypothetical protein SOVF_131040 [Spinacia oleracea])

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 40 MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 83
          MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Sbjct: 1  MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 43
[Close]
BLAST of Spo24716.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QX69_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_131040 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 40 MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 83
          MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Sbjct: 1  MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 43
The following BLAST results are available for this feature:
BLAST of Spo24716.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902191580|gb|KNA11879.1|1.7e-16100.hypothetical protein SOVF_1310... [more]
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BLAST of Spo24716.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QX69_SPIOL1.2e-16100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24716.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24716.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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