Spo24539.1 (mRNA)

Overview
NameSpo24539.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 112644448 .. 112646720 (+)
Sequence length1542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGACTTAGAAGTATGTCGATTAATGACTACTCCATCTTCTTGAACTACATCCGAGTCTTTACTAAATTGAACAAAAACAGAAATATAAATCGAAATTCTGGCAAATAAAAAAAAATCAAGATGTGAGTGCAATTATTAAGGTTTTTTTGGACGAATCATTCTAGAAATTAATTCTTACAGGTTTTTCTTGCTTTTAACCTTTATAAACTTTTAGAAAAGAATGTCTTACAGAAAAGACCGCCTTGTTGCGTCCAAGCTGTTATGCAGTACATAACGTCAGCATTTTAAAAATAAACGTGCTTCACATTTTTCATTTCTTCTTATTTTCAAAACCCTCATTTTTTCTCTCTCCTCAGAAACTTCCCTTCTCTCTCCTCTCTGCTCCAGCGGCGATGACGAAGAAGACGCCGGAGAAGACAACGGTGGTACTTCCTTGCCACCGTGGCCATCAACTACTCGCCCGACTCTCCTCCTTCCGTAGATCGAAGAGATGATGTCCATAGGTGAGAGTTTAGGTTGAGTTTGCTCGAATTTGATATGCTTCTCTCCCTTCTTTCTCTTAATTCACGGTAGTTGAATGATTCGTCATCTATTCACAGCAGTTGCGTCAGTATTCATCGCATAGATGACGAATCATTCAATTTCAAGGTTCCTTTTCGACTTTTTCCAGAAGTTTTAGAGAATGTTGCTGATTTTAAATTACTTTGAATTTTTCTTGTGAATACGTTGATTTTCTGCTGTTTTATGATGTATTTTACTTTGAATTAAAGGATAAGAAAGACGGAGATCTAAGTTTCAGCTTCGATCAAGTGCTATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTAAACATTAATCTTGTGAATTTTAAGTATGAATGAAGTTTAGGTTTAATTGATGGATGATTAAGAAGGAGAATTTCTTCCTAGGACAAGAACTTGTATATAATTGACAATCGGAAACAGAAAATGAACAACCAATTTCCGATTTAGGAGAAGGATAGTGTTGACTTGTGTAATGTGGTCATAAAAATGATGTTGAAATGTAAATTTACAGAGTCACAGAAATTTTGGTTATATTTTAGTTATGAAATGAAATTGGTCTTTCAGGTTGCTGGTGGTTGCGTCTTTCAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAACTTTTAGTGAAGAAATTTTCGACGATTCCACCCCCTAACTCTTCTTTAGCCCCGCTGGCGCAGCAGCTAAAGCAGGTTAGTGAAGACTAAACTTGTTTTAGCTAGTACTAATACTAAGAGACCTGAAGTCCGAACTAGGCTTTGTAGTCTTGTAGAGGTTCTTGCTTGCTTAAGGATGTGTTGCTACATTAATTTTCTGCAACTTTTGATGGAGACCTGGCTATTGATCTTGATGTGTTGGTTTGTGTTGACTATGTCGAGTGCTTTGTTGATGTTATAATTTGTGTTTTATTTTGGTTTGTGCTTTATAAATCAGTAAATATAGATGCATAACTTTATATTTATGTGCAACAGGATGTTTCTGGGAAATGGTAGAGTATTGAACAAAATTGACCTCCCAAGCAGAGGAGTCGAGGCACAGGCACAGGCACAGGGCCACATGGCAATTAGTGAAACTCCAACGTTTATCCCCGTTCCTCTACTCTGCTCTCGTCGTTGCTGCGTGTGGAGGGTTGGGGAATGCAGGTGGCGGAGCAGCAGAGGAGACGGTTGTGGAGTGGGATAGGGCGCTTGCTGTTGCTGGTTGGAGCATGCTGGCAAGGAAGATGGAGGATTGAGGTGGTACCTCTTGGTGTGGTGAAGGATAGGCTGGAAATGGGGTGTAGTTTAAGTCTCAAATGCTTGATGCGTGTTGTTTTGTGATGTACCGTTGTTGTAGACTTGTAGTTGTTCGTTTAATTAGTTTTAATTCAGAATAATTTTGTTTTAGTTGTTATTTATTTCGTTTTAGTTAATAATAATGTTTTTTTAGTTATGATTTATTTTGTTTAAGTTATAGTTAAGAATTTTTTTTTTAAGTTACACTTTTGTTATATTTAGTTATGAAATATAATGATTTAGTTAGAGCTG

mRNA sequence

CTGACTTAGAAGTATGTCGATTAATGACTACTCCATCTTCTTGAACTACATCCGAGTCTTTACTAAATTGAACAAAAACAGAAATATAAATCGAAATTCTGGCAAATAAAAAAAAATCAAGATGTGAGTGCAATTATTAAGGTTTTTTTGGACGAATCATTCTAGAAATTAATTCTTACAGAAACTTCCCTTCTCTCTCCTCTCTGCTCCAGCGGCGATGACGAAGAAGACGCCGGAGAAGACAACGGTGGTACTTCCTTGCCACCGTGGCCATCAACTACTCGCCCGACTCTCCTCCTTCCGTAGATCGAAGAGATGATGTCCATAGGATAAGAAAGACGGAGATCTAAGTTTCAGCTTCGATCAAGTGCTATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAACTTTTAGTGAAGAAATTTTCGACGATTCCACCCCCTAACTCTTCTTTAGCCCCGCTGGCGCAGCAGCTAAAGCAGGTTAGTGAAGACTAAACTTGTTTTAGCTAGTACTAATACTAAGAGACCTGAAGTCCGAACTAGGCTTTGTAGTCTTGTAGAGGTTCTTGCTTGCTTAAGGATGTGTTGCTACATTAATTTTCTGCAACTTTTGATGGAGACCTGGCTATTGATCTTGATGTGTTGGTTTGTGTTGACTATGTCGAGTGCTTTGTTGATGTTATAATTTGTGTTTTATTTTGGTTTGTGCTTTATAAATCAGTAAATATAGATGCATAACTTTATATTTATGTGCAACAGGATGTTTCTGGGAAATGGTAGAGTATTGAACAAAATTGACCTCCCAAGCAGAGGAGTCGAGGCACAGGCACAGGCACAGGGCCACATGGCAATTAGTGAAACTCCAACGTTTATCCCCGTTCCTCTACTCTGCTCTCGTCGTTGCTGCGTGTGGAGGGTTGGGGAATGCAGGTGGCGGAGCAGCAGAGGAGACGGTTGTGGAGTGGGATAGGGCGCTTGCTGTTGCTGGTTGGAGCATGCTGGCAAGGAAGATGGAGGATTGAGGTGGTACCTCTTGGTGTGGTGAAGGATAGGCTGGAAATGGGGTGTAGTTTAAGTCTCAAATGCTTGATGCGTGTTGTTTTGTGATGTACCGTTGTTGTAGACTTGTAGTTGTTCGTTTAATTAGTTTTAATTCAGAATAATTTTGTTTTAGTTGTTATTTATTTCGTTTTAGTTAATAATAATGTTTTTTTAGTTATGATTTATTTTGTTTAAGTTATAGTTAAGAATTTTTTTTTTAAGTTACACTTTTGTTATATTTAGTTATGAAATATAATGATTTAGTTAGAGCTG

Coding sequence (CDS)

ATGAGGATTCTGCTCAAGCTAGTGTCTACGAAGTTTCTTTGCCGGTTGTTCAAGGTTGCTGGTGGCTCAATGCCTGGGCTGGTGCAATTGGTACAAGGTACAACCTGCCTGTGTTTTTGTTGTTGTTCGCGGAGGAGCAACGGTGCGGTAATCCCTGTTCATACCAAAACTTGCGGAATATATTTAATTTGTTTTACACTTTTAGTTACAATTAATATTGCTTTAGTTAATAATTATTTTGTTTTAGTTAAGAATAATTAA

Protein sequence

MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQGTTCLCFCCCSRRSNGAVIPVHTKTCGIYLICFTLLVTINIALVNNYFVLVKNN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24539Spo24539gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24539.1Spo24539.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24539.1.exon.1Spo24539.1.exon.1exon
Spo24539.1.exon.2Spo24539.1.exon.2exon
Spo24539.1.exon.3Spo24539.1.exon.3exon
Spo24539.1.exon.4Spo24539.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24539.1.utr5p.1Spo24539.1.utr5p.1five_prime_UTR
Spo24539.1.utr5p.2Spo24539.1.utr5p.2five_prime_UTR
Spo24539.1.utr5p.3Spo24539.1.utr5p.3five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24539.1.CDS.1Spo24539.1.CDS.1CDS
Spo24539.1.CDS.2Spo24539.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24539.1.utr3p.1Spo24539.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo24539.1 vs. NCBI nr
Match: gi|902238049|gb|KNA25021.1| (hypothetical protein SOVF_010190 isoform A [Spinacia oleracea])

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-7
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 33
          MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ
Sbjct: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 32
[Close]
BLAST of Spo24539.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010190 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.200e-8
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 

		  

Query: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 33
          MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ
Sbjct: 1  MRILLKLVSTKFLCRLFKVAGGSMPGLVQLVQ 32
The following BLAST results are available for this feature:
BLAST of Spo24539.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902238049|gb|KNA25021.1|1.2e-7100.hypothetical protein SOVF_0101... [more]
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BLAST of Spo24539.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RZU7_SPIOL8.2e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24539.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24539.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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