Spo24070.1 (mRNA)

Overview
NameSpo24070.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionProtein ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT
Locationchr1 : 29679245 .. 29684711 (+)
Sequence length1839
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAATATAAGTCAAAAAAATATTTATTTGGCATGAAGTTTTAGAATAATAAAGTGATTTTAATTTTATCACGAACTCGATAGTCACTCAATTTATAGAACACGAGAATACACACTTATCTCAATCCAACTTTGAACCACAAATCCAATATGCAATTGACCCAAGTTCGATGTACGTCTGATCCGAACATGACCTAAATTTAATACTCACTTATCCATACTTGGCCCGAATCCGAGACTTAATTAGCCGATCCGGTAATGACCCAAACCCGAAGCAGACATTTGCCCGAACCAAATTAAACAGATAATAAACCATTTTAAACCCCAACCAGTTCTAACTGATCCCGAGAGTGACTCAGACTGAAGTTATTCGAACTGAAACCGAGTTCAATCTGAAACAATTTATGACATGAATTCATCCGAACCGATCCGAATTGGCCCGAATAAAAAGACTGGCCCGACATTAATCGACTTTGATGTGACACCGAGCCGTTTATAACCGATCTGATACCGATTCGATGACCCAATTTAACGGCCCATTAGTAATCCATCCACCATTGTTGACCTTCATCCTTCTATGACCCAAACTACACTTTCGACTTTCGAGACATGGAGCGGACATTGGGCTGAATGGGGTCCCAAATTCCCATATAAACATTACCCAAAATGCTAAAACTCTCATAACATATGGGCTAAAAAGAGCCCAATAATAATAATTAGAAAAGGAAACAAAAATAAAAAATAATAATGAGTAGAGATGCAAGTGCCAAGTCATCACTCTTTATAATTTTGGCGGTTAAGAGCCGTTAGTTTTTTCTCTCTCCTAATTTCTCTCACCCTCATCTTACAACCACCATCAACACATATACTACCACTCCCCGTAGTCCCTAACAACCAGAATTCCCTCTGAAAAATGCCTCTCAAGGCGGCGTCAATGGCGTCTTCTCCCCTCTGTGCTTGCCGGAACCATTTTCTCTCTCCTAGTCAACATCAGCAGTTAAACTTCTCCACCGTTGCTCAGCTCCCGCGTCTTTCTCCTTCTACTCTCCAAGTCAAAGATCGACTCAATTCCTCCTCCAAACGGCGGCGTTTTTTTTTCGCAGCGGAAGCCGTTGATTCTTCCTCTCCTTCCAAAATCTCAATCTCTTCCGCCGCCGCCGCTGACAAATCAATCGTCCCCGATGACCAAATTTCTCTCTCCAAGGTAGTATTTTCCATTTCATTTAACCTAATTAATTTGGATTATTGTAACTTTTGTTGTGTTGATTAAATCGTATTATACACTTGTAATGATGTAAATACGAAGTATTGGATGGTAAAATTGGAATTAGGAGTAATTTTAATTGAATGTCTTGATTGATCATTTCAATTTTCAACAATTACCTTTCTCTTTTGATGCGATGCTAATTCAATCTAGTTGAATTTCTAATAGAGCTCGTTTGATTTGGTTATTGAGAGTGTTCAAGGAGAAATATGAAACGTTGTTTAAAATTGGGGAAAAATTGGGGATAAATGGAAGTGTTTTTATTGAAAGGATAATTGAACACTGAAGTATACTTAGGAAAATTCGGGTTCGTGAAACGAAGAATATATGTGGTTATGAGAGACCTTGTGATTGTGATCTAGAGACACATTTCAATATTGATCCTTGCTGAAGTGTTATATTAATAGGGTGGGGCAATACATTTGATTGAATATCTGTTGTCAATTAAGTGTTGAATTATTGATTAGTTGATTACTGAAGGTCTACCATGCACCCATTAGGCCATTATCGAGGTTCCAGGATAATATCTACATAACTAAAACTGGATTACTTTTCACTTTTCAGATTTCATTTGGTGTCGTGGGACTTGGAAGTGGAGTCACACTACTAGCGTGAGCGCCTTGGTGGCCGTGTTTATTTAATTTCCGTCCAAGAATTATGATCTTTAGTTGTTACTTACAATGTTTCTGTTGTGCAGGTATGGTTTTGGTGCTTACTTTAATATACTACCTGGTTCAGAATGGTCAGCGATAATGTTGACTTACGGTTTCCCTGTTGCAGTTATTGGCATGGCTCTCAAGGTGAAATATCCTTCCTTTTACATATTGAACAAGAATTGCAATAATTTGGACTTCCGCATCAACATGTATTGATAATTTTCCAAGAGAGTAGAAATGGTGGTTGAAATCAAGCATTGTATTGAAGTGTATTAGCATTAATAGAGTTTCAAGTTGGAATGTTTCAGTGGCCTATATCACATTATTATTTTCAGCTTAATTTCTTGGAAATCATGTGTATGCGCTTCTTTTTTTTGTCATGATGTTGGCATTCACTTCTTGCAGTATGCAGAACTTAAACCTGTGCCATGTTTGACTTATGCTGATGCTGAAATGGTGCGGGAAAAGTGTGCCACTCCAGTTCTTAAGCAGGTTTGTTTCAGCTAAGCCGAAACTAAAACCATATAGGTGTACTGTTGCTTGCAATTTATATCCACCTTGTGCTGCGACAACCAGCTTTTTCTGTAGATGTACACAGTTGCCTCTGAATGGCTAGTAATTTTTATCTTCTCTTTCCTGAATGATTTTGGATTACCAAAATTTCTAGGTGAAAGCTGATGTTACCAGATTTCGCTATGGAGATGAACAACACCTTGATGAGGCTTTGCCACGGATTTTCCAATATAATCAGGTCTTCTTTCTGCCCTATAATGACTTTGTTAATTGATAGGATTTCAGTTGCTATTAGGGAAAAGAAACATGTGGCAGCATGGGGCTCTCTCCCCCTTTTTCTGTTAAATTTCTATCTATGTCTGCAGTCTATTCCTTCCTTTCTTTTCCAGTCATTATTGTGTGTATCATGTTGACGAAATACTATATACGACATTGTACGCATGGAAAATATCTAGACTATGGCTCATATCTTAAACTTGTCTCAAGCAGTCTATATTCCAATCAGTTAATTGGTGTAGGTGTGCAGCCAACGACAGGTCACCATTTTCTGTGAATAATTGGAATCTTCAAAGTGTTGTGCGCCATATATGAGAAAATTTCAAGTGATATAGGATGCCATAATTTTGACATCTTTCCTAATACAAGAAACTTCAATACTACGGATGAAGCTTTCCAGACCTATTATATTATTGAAGAGGTGCTACCAGAGAATCTCGAAAAACATTTAAGAAGAAACTGAGGACTTGAAATTAAGGGGATATGATCAGATGGTTATAGAACATTTAGCAAATATCAAATTTATCCTGGAGATTTACCTGGAATAAACTGACCTTGGATTGGAAATCCTTCCTTTCCTCTCCATTCATTTTGACTTACCTGAGGGTTTAGCTACTAACTCTTTTGTGCCGTATGATACTTCATTCAATCACTGGCAAATATAGAATAAAACATATGAAATCCATTTCCAGTGAAGTAATATTTATCTAGCTCTGTCCCTGCCTTTCCTGCTGCATCCAGCTTCTATCAGATTAGTATTTTCGTAAAAGCATCTGGTAAATTATCAGACCCTTATGAAGTACCTCTCTTTTATGCTCATCTTAGTTTTACGGAAGCATTCAAAGCAACAATGTAGAATATCTGTGAGTTCATGGAGAGGTACTACTGAGTACGTGATATTTTCTGTTCTGGACTTGGCTGCACTTGTTAACTTTACAAGAGGGAGCTCTCCAGTCAGATTTACCTGTCAGGAGTTTTTTTCCTCCCCATTCTGCTCAATGTAAACAGTATGCTACAGTTATCAGATACCTGAATCTTCTATTTTGTTGCAGTAAAGGCAATATGAAAGGCTAGCATGATAATGTATTATGTTCATCCGTTTTATTGACCTCAAAATGTGTCAAATTGATAAACTGATCTGACTGTACAAGTAAAACGAGTCAGCAATTCAACTAGTAGAGCGCTTAAAAATTGGACGAATATGTTGTCTTATGATGTTTACTTTTTTGTTTCTTTCAACATAGGGTGGAGGTATTCCAAGGAGAAGTGCTCCCGTCCTTAAAATGCTTCGTGAAGAGGTATGCTTTCTGTTCATATCCTAGTAAATTTTCTCTCTGATGGAACAATATACGGTTCTGTTCATACATTGTTACATTAGCCACGAGAGAATTTCTTAGAATTGGATGTTCTCCAGGGTTTATTTGGAGTTCTTTTTTAACTGTAAATGTGTCTGTGCTTTCCATCTCTGAATTTTTCTTCACTACTTTGTCTGCTATATTTTGTCTAATTGATGTGTAGGCTAGTTTTGGACAATTTACAACTCTTTTTAGGCTGGATCTTGTGTGGGCTTTGGGTCACGTTTATTGAACCTTTGTCTGCTGTCAGAAAAATAAATTCTGAAGTCGTATGCCACAATACTGTCAATACCATAAATTCTGAAAACTCTTTCCGTGCCATGCAGCCAATGAGCCAAATACAGTGATGTGCATGACATCTTAATGATTAAACTGGCTTTATTCCAATTTTTCGGATGTTGTCATCCATGACTAATTTCGGCTGATTTATTCCCATTTTTCCAGGTGACTGAAGATGACAAGTATTGCTTAGTTCTTGTATTTGAGGCAAAATCTTTGCAGCTTTCAGATTTTGAAAAAAGACAGGTAAATAAGGGTACTAACTGGAATTCATAGATCCTTTGGCTCTCTTTTAATTGTAGCATATGTTTTTGCCGTGAAACTGGCAAGTTATGTGAATATGAGTTTCTTACTTCATGTATCTGCTCCAAAAATGTTGACCTCAAACTTCTATTTCTAAAGTCCTACATCTTATTTGCAAAGTAAAATTGGTAAGAGAAAAAGAGGGGCATGCAAAACTATGCATAAATACAGACTATGTTGAATCAATCTAATTCTTTGCTTTTATTTTCTTAGGCAAAATTTGCTTCATTTTTCGGACCAGGAATTTCTGCTGAAGTTGGTAAGTAATACGAATCCTGTACCCTCTGTTATCCAATTATGAACACATGTTTAACTGTAAACATGATTCTTGCTTACTAAAAAAACACAAATCACTCGCTAGATTCACTAGATGTTGTAGTTATAGAAATGCCAATTATGTCACAAAAATCATAGGTGTGTGATAAATGCTTAATGCTTACCTGGCCATAAATTAGCCGAATACACCTTATTTCTGACTATAGTAGAGTCAAACTGCTTCTTAGTGAACATCCTAATCAACCAAATACTTGAACAGAAGCTGGGAAATACTGTTTGGTATAGAACTAGGTCGTAACGGAGTATGATGTGCTCTGTATCAGTACGATTGGATTTTTTGTAACATAATTCTTCTCTAAGTACTACTTCGTAATAGACAGGTAAAGGACCAAATGATGTTTTTTTTTTGTAGAATCCCTAGATGATGTGATAATTTCTTTTCACTTACAGGTAAAGGAGAAAATGATCTCTTCGAAGTTCGTCTCATATCTAATACACAAGCATAAAGGAGCAACCAATTGTAAGGCAACTACTTCTAAGTTCTAG

mRNA sequence

AGTAATATAAGTCAAAAAAATATTTATTTGGCATGAAGTTTTAGAATAATAAAGTGATTTTAATTTTATCACGAACTCGATAGTCACTCAATTTATAGAACACGAGAATACACACTTATCTCAATCCAACTTTGAACCACAAATCCAATATGCAATTGACCCAAGTTCGATGTACGTCTGATCCGAACATGACCTAAATTTAATACTCACTTATCCATACTTGGCCCGAATCCGAGACTTAATTAGCCGATCCGGTAATGACCCAAACCCGAAGCAGACATTTGCCCGAACCAAATTAAACAGATAATAAACCATTTTAAACCCCAACCAGTTCTAACTGATCCCGAGAGTGACTCAGACTGAAGTTATTCGAACTGAAACCGAGTTCAATCTGAAACAATTTATGACATGAATTCATCCGAACCGATCCGAATTGGCCCGAATAAAAAGACTGGCCCGACATTAATCGACTTTGATGTGACACCGAGCCGTTTATAACCGATCTGATACCGATTCGATGACCCAATTTAACGGCCCATTAGTAATCCATCCACCATTGTTGACCTTCATCCTTCTATGACCCAAACTACACTTTCGACTTTCGAGACATGGAGCGGACATTGGGCTGAATGGGGTCCCAAATTCCCATATAAACATTACCCAAAATGCTAAAACTCTCATAACATATGGGCTAAAAAGAGCCCAATAATAATAATTAGAAAAGGAAACAAAAATAAAAAATAATAATGAGTAGAGATGCAAGTGCCAAGTCATCACTCTTTATAATTTTGGCGGTTAAGAGCCGTTAGTTTTTTCTCTCTCCTAATTTCTCTCACCCTCATCTTACAACCACCATCAACACATATACTACCACTCCCCGTAGTCCCTAACAACCAGAATTCCCTCTGAAAAATGCCTCTCAAGGCGGCGTCAATGGCGTCTTCTCCCCTCTGTGCTTGCCGGAACCATTTTCTCTCTCCTAGTCAACATCAGCAGTTAAACTTCTCCACCGTTGCTCAGCTCCCGCGTCTTTCTCCTTCTACTCTCCAAGTCAAAGATCGACTCAATTCCTCCTCCAAACGGCGGCGTTTTTTTTTCGCAGCGGAAGCCGTTGATTCTTCCTCTCCTTCCAAAATCTCAATCTCTTCCGCCGCCGCCGCTGACAAATCAATCGTCCCCGATGACCAAATTTCTCTCTCCAAGATTTCATTTGGTGTCGTGGGACTTGGAAGTGGAGTCACACTACTAGCGTATGGTTTTGGTGCTTACTTTAATATACTACCTGGTTCAGAATGGTCAGCGATAATGTTGACTTACGGTTTCCCTGTTGCAGTTATTGGCATGGCTCTCAAGTATGCAGAACTTAAACCTGTGCCATGTTTGACTTATGCTGATGCTGAAATGGTGCGGGAAAAGTGTGCCACTCCAGTTCTTAAGCAGGTGAAAGCTGATGTTACCAGATTTCGCTATGGAGATGAACAACACCTTGATGAGGCTTTGCCACGGATTTTCCAATATAATCAGGGTGGAGGTATTCCAAGGAGAAGTGCTCCCGTCCTTAAAATGCTTCGTGAAGAGGTGACTGAAGATGACAAGTATTGCTTAGTTCTTGTATTTGAGGCAAAATCTTTGCAGCTTTCAGATTTTGAAAAAAGACAGGCAAAATTTGCTTCATTTTTCGGACCAGGAATTTCTGCTGAAGTTGAATCCCTAGATGATGTGATAATTTCTTTTCACTTACAGGTAAAGGAGAAAATGATCTCTTCGAAGTTCGTCTCATATCTAATACACAAGCATAAAGGAGCAACCAATTGTAAGGCAACTACTTCTAAGTTCTAG

Coding sequence (CDS)

ATGCCTCTCAAGGCGGCGTCAATGGCGTCTTCTCCCCTCTGTGCTTGCCGGAACCATTTTCTCTCTCCTAGTCAACATCAGCAGTTAAACTTCTCCACCGTTGCTCAGCTCCCGCGTCTTTCTCCTTCTACTCTCCAAGTCAAAGATCGACTCAATTCCTCCTCCAAACGGCGGCGTTTTTTTTTCGCAGCGGAAGCCGTTGATTCTTCCTCTCCTTCCAAAATCTCAATCTCTTCCGCCGCCGCCGCTGACAAATCAATCGTCCCCGATGACCAAATTTCTCTCTCCAAGATTTCATTTGGTGTCGTGGGACTTGGAAGTGGAGTCACACTACTAGCGTATGGTTTTGGTGCTTACTTTAATATACTACCTGGTTCAGAATGGTCAGCGATAATGTTGACTTACGGTTTCCCTGTTGCAGTTATTGGCATGGCTCTCAAGTATGCAGAACTTAAACCTGTGCCATGTTTGACTTATGCTGATGCTGAAATGGTGCGGGAAAAGTGTGCCACTCCAGTTCTTAAGCAGGTGAAAGCTGATGTTACCAGATTTCGCTATGGAGATGAACAACACCTTGATGAGGCTTTGCCACGGATTTTCCAATATAATCAGGGTGGAGGTATTCCAAGGAGAAGTGCTCCCGTCCTTAAAATGCTTCGTGAAGAGGTGACTGAAGATGACAAGTATTGCTTAGTTCTTGTATTTGAGGCAAAATCTTTGCAGCTTTCAGATTTTGAAAAAAGACAGGCAAAATTTGCTTCATTTTTCGGACCAGGAATTTCTGCTGAAGTTGAATCCCTAGATGATGTGATAATTTCTTTTCACTTACAGGTAAAGGAGAAAATGATCTCTTCGAAGTTCGTCTCATATCTAATACACAAGCATAAAGGAGCAACCAATTGTAAGGCAACTACTTCTAAGTTCTAG

Protein sequence

MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSLQLSDFEKRQAKFASFFGPGISAEVESLDDVIISFHLQVKEKMISSKFVSYLIHKHKGATNCKATTSKF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24070Spo24070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24070.1Spo24070.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24070.1.exon.1Spo24070.1.exon.1exon
Spo24070.1.exon.2Spo24070.1.exon.2exon
Spo24070.1.exon.3Spo24070.1.exon.3exon
Spo24070.1.exon.4Spo24070.1.exon.4exon
Spo24070.1.exon.5Spo24070.1.exon.5exon
Spo24070.1.exon.6Spo24070.1.exon.6exon
Spo24070.1.exon.7Spo24070.1.exon.7exon
Spo24070.1.exon.8Spo24070.1.exon.8exon
Spo24070.1.exon.9Spo24070.1.exon.9exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24070.1.utr5p.1Spo24070.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24070.1.CDS.1Spo24070.1.CDS.1CDS
Spo24070.1.CDS.2Spo24070.1.CDS.2CDS
Spo24070.1.CDS.3Spo24070.1.CDS.3CDS
Spo24070.1.CDS.4Spo24070.1.CDS.4CDS
Spo24070.1.CDS.5Spo24070.1.CDS.5CDS
Spo24070.1.CDS.6Spo24070.1.CDS.6CDS
Spo24070.1.CDS.7Spo24070.1.CDS.7CDS
Spo24070.1.CDS.8Spo24070.1.CDS.8CDS
Spo24070.1.CDS.9Spo24070.1.CDS.9CDS


Homology
BLAST of Spo24070.1 vs. NCBI nr
Match: gi|902078335|gb|KNA03102.1| (hypothetical protein SOVF_212350 [Spinacia oleracea])

HSP 1 Score: 510.0 bits (1312), Expect = 2.900e-141
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1

		  

Query: 1   MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF 60
           MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF
Sbjct: 1   MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF 60

Query: 61  FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF 120
           FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF
Sbjct: 61  FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF 120

Query: 121 NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD 180
           NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD
Sbjct: 121 NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD 180

Query: 181 VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL 240
           VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL
Sbjct: 181 VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL 240

Query: 241 QLSDFEKRQAKFASFFGPGISAEV 265
           QLSDFEKRQAKFASFFGPGISAEV
Sbjct: 241 QLSDFEKRQAKFASFFGPGISAEV 264

BLAST of Spo24070.1 vs. NCBI nr
Match: gi|731315716|ref|XP_010692659.1| (PREDICTED: uncharacterized protein LOC104905741 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 404.1 bits (1037), Expect = 2.300e-109
Identity = 210/270 (77.78%), Postives = 234/270 (86.67%), Query Frame = 1

		  

Query: 1   MPLKAASMASSPLCACRNHFLSPSQH------QQLNFSTVAQLPRLSPSTLQVKDRLNSS 60
           MPL+AASMA +PLCACRNHFLSPSQH      QQ  FS + +LP LS STL +KDRLNSS
Sbjct: 1   MPLRAASMAVTPLCACRNHFLSPSQHHHHHQQQQFQFSAITKLPVLSSSTLLLKDRLNSS 60

Query: 61  SKRRRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAY 120
           SKR+RF   AEAVDSSS   I       +DKSI+ DD+ SLSKISFG+VGLGSGVTLLAY
Sbjct: 61  SKRQRFNLVAEAVDSSSQPSI------VSDKSIISDDEGSLSKISFGLVGLGSGVTLLAY 120

Query: 121 GFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVL 180
           GFGAYFNILPGSEWSA+MLTYGFPVAVIGMAL+YAELKPVPC+ Y+DA+M+REKCATPVL
Sbjct: 121 GFGAYFNILPGSEWSALMLTYGFPVAVIGMALQYAELKPVPCVVYSDAQMLREKCATPVL 180

Query: 181 KQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLV 240
           KQVK+DVTR+RYGDEQHLDEAL RIFQY QGGGI RRSAPVLK +REEVT D KYCLVL+
Sbjct: 181 KQVKSDVTRYRYGDEQHLDEALKRIFQYGQGGGISRRSAPVLKKIREEVTGDGKYCLVLM 240

Query: 241 FEAKSLQLSDFEKRQAKFASFFGPGISAEV 265
           FEAK+LQLSDFE+RQAKFASFFGPGI+AE+
Sbjct: 241 FEAKALQLSDFEQRQAKFASFFGPGITAEI 264

BLAST of Spo24070.1 vs. NCBI nr
Match: gi|629103427|gb|KCW68896.1| (hypothetical protein EUGRSUZ_F02481 [Eucalyptus grandis])

HSP 1 Score: 326.6 bits (836), Expect = 4.600e-86
Identity = 160/207 (77.29%), Postives = 184/207 (88.89%), Query Frame = 1

		  

Query: 58  RRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFG 117
           R+  F A A DS+ P        A+A K+I+PDD+ SL+K+SFGV+GLG GV+LL+YGFG
Sbjct: 119 RKLAFVARAADSTQP--------ASAGKAIIPDDEFSLAKVSFGVIGLGVGVSLLSYGFG 178

Query: 118 AYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQV 177
           AYFNILPGSEWSA+MLTYGFP+A+IGMALKYAELKPVPCLTY DA+M+RE CATP+LKQV
Sbjct: 179 AYFNILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYTDAQMLRENCATPILKQV 238

Query: 178 KADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEA 237
           ++DV R+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVLKM+REEVTE+ KYCLVLVFEA
Sbjct: 239 RSDVIRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLKMIREEVTEEGKYCLVLVFEA 298

Query: 238 KSLQLSDFEKRQAKFASFFGPGISAEV 265
           K+LQLSDFE+RQAKFASFFGPGISAEV
Sbjct: 299 KALQLSDFEQRQAKFASFFGPGISAEV 317

BLAST of Spo24070.1 vs. NCBI nr
Match: gi|702372239|ref|XP_010061866.1| (PREDICTED: uncharacterized protein LOC104449417 [Eucalyptus grandis])

HSP 1 Score: 326.6 bits (836), Expect = 4.600e-86
Identity = 160/207 (77.29%), Postives = 184/207 (88.89%), Query Frame = 1

		  

Query: 58  RRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFG 117
           R+  F A A DS+ P        A+A K+I+PDD+ SL+K+SFGV+GLG GV+LL+YGFG
Sbjct: 69  RKLAFVARAADSTQP--------ASAGKAIIPDDEFSLAKVSFGVIGLGVGVSLLSYGFG 128

Query: 118 AYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQV 177
           AYFNILPGSEWSA+MLTYGFP+A+IGMALKYAELKPVPCLTY DA+M+RE CATP+LKQV
Sbjct: 129 AYFNILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYTDAQMLRENCATPILKQV 188

Query: 178 KADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEA 237
           ++DV R+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVLKM+REEVTE+ KYCLVLVFEA
Sbjct: 189 RSDVIRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLKMIREEVTEEGKYCLVLVFEA 248

Query: 238 KSLQLSDFEKRQAKFASFFGPGISAEV 265
           K+LQLSDFE+RQAKFASFFGPGISAEV
Sbjct: 249 KALQLSDFEQRQAKFASFFGPGISAEV 267

BLAST of Spo24070.1 vs. NCBI nr
Match: gi|629103428|gb|KCW68897.1| (hypothetical protein EUGRSUZ_F02481 [Eucalyptus grandis])

HSP 1 Score: 325.1 bits (832), Expect = 1.300e-85
Identity = 159/206 (77.18%), Postives = 183/206 (88.83%), Query Frame = 1

		  

Query: 58  RRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFG 117
           R+  F A A DS+ P        A+A K+I+PDD+ SL+K+SFGV+GLG GV+LL+YGFG
Sbjct: 119 RKLAFVARAADSTQP--------ASAGKAIIPDDEFSLAKVSFGVIGLGVGVSLLSYGFG 178

Query: 118 AYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQV 177
           AYFNILPGSEWSA+MLTYGFP+A+IGMALKYAELKPVPCLTY DA+M+RE CATP+LKQV
Sbjct: 179 AYFNILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYTDAQMLRENCATPILKQV 238

Query: 178 KADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEA 237
           ++DV R+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVLKM+REEVTE+ KYCLVLVFEA
Sbjct: 239 RSDVIRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLKMIREEVTEEGKYCLVLVFEA 298

Query: 238 KSLQLSDFEKRQAKFASFFGPGISAE 264
           K+LQLSDFE+RQAKFASFFGPGISAE
Sbjct: 299 KALQLSDFEQRQAKFASFFGPGISAE 316

BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7C4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_212350 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 2.000e-141
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1

		  

Query: 1   MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF 60
           MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF
Sbjct: 1   MPLKAASMASSPLCACRNHFLSPSQHQQLNFSTVAQLPRLSPSTLQVKDRLNSSSKRRRF 60

Query: 61  FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF 120
           FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF
Sbjct: 61  FFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFGAYF 120

Query: 121 NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD 180
           NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD
Sbjct: 121 NILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQVKAD 180

Query: 181 VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL 240
           VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL
Sbjct: 181 VTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEAKSL 240

Query: 241 QLSDFEKRQAKFASFFGPGISAEV 265
           QLSDFEKRQAKFASFFGPGISAEV
Sbjct: 241 QLSDFEKRQAKFASFFGPGISAEV 264

BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CY47_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026500 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.600e-109
Identity = 210/270 (77.78%), Postives = 234/270 (86.67%), Query Frame = 1

		  

Query: 1   MPLKAASMASSPLCACRNHFLSPSQH------QQLNFSTVAQLPRLSPSTLQVKDRLNSS 60
           MPL+AASMA +PLCACRNHFLSPSQH      QQ  FS + +LP LS STL +KDRLNSS
Sbjct: 1   MPLRAASMAVTPLCACRNHFLSPSQHHHHHQQQQFQFSAITKLPVLSSSTLLLKDRLNSS 60

Query: 61  SKRRRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAY 120
           SKR+RF   AEAVDSSS   I       +DKSI+ DD+ SLSKISFG+VGLGSGVTLLAY
Sbjct: 61  SKRQRFNLVAEAVDSSSQPSI------VSDKSIISDDEGSLSKISFGLVGLGSGVTLLAY 120

Query: 121 GFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVL 180
           GFGAYFNILPGSEWSA+MLTYGFPVAVIGMAL+YAELKPVPC+ Y+DA+M+REKCATPVL
Sbjct: 121 GFGAYFNILPGSEWSALMLTYGFPVAVIGMALQYAELKPVPCVVYSDAQMLREKCATPVL 180

Query: 181 KQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLV 240
           KQVK+DVTR+RYGDEQHLDEAL RIFQY QGGGI RRSAPVLK +REEVT D KYCLVL+
Sbjct: 181 KQVKSDVTRYRYGDEQHLDEALKRIFQYGQGGGISRRSAPVLKKIREEVTGDGKYCLVLM 240

Query: 241 FEAKSLQLSDFEKRQAKFASFFGPGISAEV 265
           FEAK+LQLSDFE+RQAKFASFFGPGI+AE+
Sbjct: 241 FEAKALQLSDFEQRQAKFASFFGPGITAEI 264

BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Match: A0A059BSI1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02481 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 3.200e-86
Identity = 160/207 (77.29%), Postives = 184/207 (88.89%), Query Frame = 1

		  

Query: 58  RRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFG 117
           R+  F A A DS+ P        A+A K+I+PDD+ SL+K+SFGV+GLG GV+LL+YGFG
Sbjct: 119 RKLAFVARAADSTQP--------ASAGKAIIPDDEFSLAKVSFGVIGLGVGVSLLSYGFG 178

Query: 118 AYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQV 177
           AYFNILPGSEWSA+MLTYGFP+A+IGMALKYAELKPVPCLTY DA+M+RE CATP+LKQV
Sbjct: 179 AYFNILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYTDAQMLRENCATPILKQV 238

Query: 178 KADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEA 237
           ++DV R+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVLKM+REEVTE+ KYCLVLVFEA
Sbjct: 239 RSDVIRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLKMIREEVTEEGKYCLVLVFEA 298

Query: 238 KSLQLSDFEKRQAKFASFFGPGISAEV 265
           K+LQLSDFE+RQAKFASFFGPGISAEV
Sbjct: 299 KALQLSDFEQRQAKFASFFGPGISAEV 317

BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Match: A0A059BS19_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02481 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 9.300e-86
Identity = 159/206 (77.18%), Postives = 183/206 (88.83%), Query Frame = 1

		  

Query: 58  RRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAYGFG 117
           R+  F A A DS+ P        A+A K+I+PDD+ SL+K+SFGV+GLG GV+LL+YGFG
Sbjct: 119 RKLAFVARAADSTQP--------ASAGKAIIPDDEFSLAKVSFGVIGLGVGVSLLSYGFG 178

Query: 118 AYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVLKQV 177
           AYFNILPGSEWSA+MLTYGFP+A+IGMALKYAELKPVPCLTY DA+M+RE CATP+LKQV
Sbjct: 179 AYFNILPGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYTDAQMLRENCATPILKQV 238

Query: 178 KADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLVFEA 237
           ++DV R+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVLKM+REEVTE+ KYCLVLVFEA
Sbjct: 239 RSDVIRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLKMIREEVTEEGKYCLVLVFEA 298

Query: 238 KSLQLSDFEKRQAKFASFFGPGISAE 264
           K+LQLSDFE+RQAKFASFFGPGISAE
Sbjct: 299 KALQLSDFEQRQAKFASFFGPGISAE 316

BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Match: A0A068U2M6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040293001 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.700e-84
Identity = 172/278 (61.87%), Postives = 211/278 (75.90%), Query Frame = 1

		  

Query: 1   MPLKAASMASSP-----------LCACRNHFL---SPSQHQQLNFSTVAQLPRLSPSTLQ 60
           M + + +MA++P              C   FL   + S  Q LN +T    P  S   + 
Sbjct: 1   MAMNSTAMAATPSLPTTAGGGGRTVPCSPRFLQCCNCSYLQYLNRATTHSRPDSSLYAII 60

Query: 61  VKDRLNSSSKRRRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLG 120
            +   +  + R R  F  +A DS+ P+    +S  +ADKS+VPDD+ SL+K+SFGV+GLG
Sbjct: 61  QERTTHHHNLRFRPIF--KAADSTQPT----TSTTSADKSLVPDDEFSLAKVSFGVIGLG 120

Query: 121 SGVTLLAYGFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVR 180
            G+TLL+YGFGAYFNILPGSEWSA+MLTYGFP+ +IGMALKYAELKPVPCLT++DA+ +R
Sbjct: 121 GGITLLSYGFGAYFNILPGSEWSALMLTYGFPLTIIGMALKYAELKPVPCLTHSDAQKLR 180

Query: 181 EKCATPVLKQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTED 240
           E CATP LKQV++DVTR+RYGDEQHLDEAL RIFQY QGGGIPRRSAPVL+M+REEVTED
Sbjct: 181 ESCATPTLKQVRSDVTRYRYGDEQHLDEALKRIFQYGQGGGIPRRSAPVLQMIREEVTED 240

Query: 241 DKYCLVLVFEAKSLQLSDFEKRQAKFASFFGPGISAEV 265
            KYCL+LVFEAK+LQLSDFE+RQAKFASFFGPGI+AEV
Sbjct: 241 GKYCLILVFEAKALQLSDFEQRQAKFASFFGPGITAEV 272

BLAST of Spo24070.1 vs. ExPASy Swiss-Prot
Match: Y575_SYNY3 (Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.100e-20
Identity = 68/184 (36.96%), Postives = 97/184 (52.72%), Query Frame = 1

		  

Query: 95  LSKISFGVVGLGSGVTLLAYGFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPV 154
           L KIS   VGL  G  L   GF AY   L  +  +     YG P+ + G+ALK AELKP+
Sbjct: 2   LPKISLAAVGLTVGGILTITGFVAY--ALDYATLNLAGFFYGIPLVLGGLALKAAELKPI 61

Query: 155 PCLTYADAEMV--REKCATPVLKQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRS 214
           P       +++  R + ATP   Q++ DVTR+RYG E HLDE+L R+     G       
Sbjct: 62  PFSQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLERL-----GLSPTDEE 121

Query: 215 APVLKMLREEVTEDDKYCLVLVFEAKSLQLSDFEKRQAKFASFFGPGISAEVESLDDVII 274
            PVL  L E+  E  KY L L F +  + L  ++++Q K A FFGP +   V   ++ ++
Sbjct: 122 RPVLTSLLEQDWE-GKYVLTLTFTSPFISLETWQEKQEKIAKFFGPDLEVTVAEPEEKVV 177

Query: 275 SFHL 277
           + +L
Sbjct: 182 TVNL 177

BLAST of Spo24070.1 vs. TAIR (Arabidopsis)
Match: AT5G38660.1 (acclimation of photosynthesis to environment)

HSP 1 Score: 292.7 bits (748), Expect = 2.600e-79
Identity = 141/210 (67.14%), Postives = 177/210 (84.29%), Query Frame = 1

		  

Query: 55  SKRRRFFFAAEAVDSSSPSKISISSAAAADKSIVPDDQISLSKISFGVVGLGSGVTLLAY 114
           ++ +R     + V  ++ S  S  S A+ D++++PDD+ +L+KISFGV+GLG GV+LL+Y
Sbjct: 51  TRLKREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSY 110

Query: 115 GFGAYFNILPGSEWSAIMLTYGFPVAVIGMALKYAELKPVPCLTYADAEMVREKCATPVL 174
           GFGAYF ILPG+EWSAIMLTYGFP+++IGMALKYAELKPVPCL+Y+DA  +RE CATP+L
Sbjct: 111 GFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPIL 170

Query: 175 KQVKADVTRFRYGDEQHLDEALPRIFQYNQGGGIPRRSAPVLKMLREEVTEDDKYCLVLV 234
            QV+ DVTR+RYGDEQHL+EAL RIFQY  GGGIPRRSAP+L+++REEV  D +YC+VLV
Sbjct: 171 TQVRNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEVLTDGRYCVVLV 230

Query: 235 FEAKSLQLSDFEKRQAKFASFFGPGISAEV 265
           FEAK+L LSDFEKRQAKF SFFGP I+AEV
Sbjct: 231 FEAKALTLSDFEKRQAKFTSFFGPNITAEV 260

The following BLAST results are available for this feature:
BLAST of Spo24070.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902078335|gb|KNA03102.1|2.9e-141100.hypothetical protein SOVF_2123... [more]
gi|731315716|ref|XP_010692659.1|2.3e-10977.7PREDICTED: uncharacterized pro... [more]
gi|629103427|gb|KCW68896.1|4.6e-8677.2hypothetical protein EUGRSUZ_F... [more]
gi|702372239|ref|XP_010061866.1|4.6e-8677.2PREDICTED: uncharacterized pro... [more]
gi|629103428|gb|KCW68897.1|1.3e-8577.1hypothetical protein EUGRSUZ_F... [more]
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BLAST of Spo24070.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q7C4_SPIOL2.0e-141100.Uncharacterized protein OS=Spi... [more]
A0A0J8CY47_BETVU1.6e-10977.7Uncharacterized protein OS=Bet... [more]
A0A059BSI1_EUCGR3.2e-8677.2Uncharacterized protein OS=Euc... [more]
A0A059BS19_EUCGR9.3e-8677.1Uncharacterized protein OS=Euc... [more]
A0A068U2M6_COFCA1.7e-8461.8Uncharacterized protein OS=Cof... [more]
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BLAST of Spo24070.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y575_SYNY31.1e-2036.9Thylakoid membrane protein slr... [more]
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BLAST of Spo24070.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G38660.12.6e-7967.1acclimation of photosynthesis ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021275Protein of unknown function DUF2854PFAMPF11016DUF2854coord: 114..264
score: 1.3
NoneNo IPR availablePANTHERPTHR35551FAMILY NOT NAMEDcoord: 55..264
score: 5.3E
NoneNo IPR availablePANTHERPTHR35551:SF1SUBFAMILY NOT NAMEDcoord: 55..264
score: 5.3E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000502 proteasome complex