Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAAACTCAAACCCCACTTCAAATCAACTCCTTTTCACACTATTCATCCTAACAATCATCTCAATTCCATCAATTATCACCTCAAAATCAACCATTGAACCCTGCTCAAACTCAGACTCCTGCAATGCAATGCTAGGTTACACTCTCTACACAGACCTCAAAGTTTCCGAAGTTGCTTCCCTCTTCGGAATCGACCCAATCTCTCTCCTAACAGCAAACTCAGTCGACATTTCAATCCCAGATGTCGAAAACCACATTTTACCCTCACAACTATTCCTCAGAATCCCAATTAGTTGCTCCTGTGTTGATGGAATCAGAAAATCAGTCTCTACCCATTACAAAACCAGGCCTTCTGATTCAATAACCTCGATTTCTGACACCATTTATGGGGGTTTAGTTTCTGCTGATCAGCTTAAAGAAGCTAACTCCATTACTGATTCTTCTGTTCTTGATGTTGGACAGAGTTTGGTTGTGCCTTTGCCTTGTACTTGTTTTAATAATACTGATAACTCTTTGCCTGCTATCTATTTGTCATATGTTGTTCAGCCTGTTGATACATTGGTTGGTATTGCGGCGATGTATCGGAATACTATTACTGATTTGATGAATGTTAATGCTATGGGAAGTACTGCTATTTTTCCTGGGGATATACTTTCTGTGCCATTGTCTGGTGAGAATACTGTCTTGGTTTTCTTTTTTGTTTATGTTTTTGTTGTTGGGAAATGCTTAATTCAGTTCATAATAAGAAGTATTACAATGTAAAAATAGTTAGCAGTAGGTAAGCATTAATAATACTGGTTGAAACTTGACTTTGTTATGAATTGCAATCTTAATGCATAATACTATATTAGGAAATATATTTGTTATGCATTTTGCAATGAAATTGGTTGTTAATGAGGACTTGATGCGCGTATGGTGCACCTTAAGAACACAAGCACATAGGTAACAAAACATTTCCTTTCATGAAAAGAACATGAATATTTGTATTATTTATACATTTAATACAAAGCGAAATAATATATGGCATGTACTTTTTATCACAATGTCATGTTCTTTTGCATGTGCACATATGTTCTTTTGGGTGCACCATGCTCACCGTGTCCACAGTCCACGAATTGGGACTTGATGCTCAGTGTATAGAAAGTTAAACTAACTGAAAAAAGGTCTACATTACGATATTCTCGATTGGATTGAGTCTCTAATGTTTATGATAATCTAAGTGCTTATTAGTAGGAAAAGTGTGTTGCTAGAACGCTTTGTACTATGCACTTTAGCAAGGCTATGTCGAGGAGTAGAATTGTAGCACTCTACTACCTTTGTCTGAAAAATACGAGCATTTGGACAAGGTCGTATTAACTTTTTAGTATTCCGAGTGTCATCAAATAGTCAGAAACACTGTAGACATACTAAGAATTCAGTCAGTTAAGTCTAGTCAAAACTGCATTGTTATTTTGAAGTGATGAATTATATTATGTTTATATTTGGCACTATTGTTAGGTGTAATGACCTATGATGTTACCTTGAGTTTATAAAGTGATATACTCTGTATAATGTTGTATGCATGCTTGTAGTTCGAAACAATTTTTTTGGCTTAAATGACTTACATTTGAAACAAAGGGAGCGATTCATTAGTTCATTACACACCTTTGGATTTTAGTAGGTCAATGTGGTTATTTCATTATACATGTATCTGGGTTTCAATGTTGTGCTTGCTTAATTGGTACATTACTTTGGTGATTGAGTGAATGAGTGCCTGCAATCTACATGTTGTCAATTAAAAGTGTATTCAAACAAGCAATGAGGTTTCTACATGTTGAATTCCTTACTATATCTAATCAATGGCATGATGGATAAGTTTCTAATTTTGTCATTTCCCTGCAGCGTGCGCATCGAACTTTCCGAGTTCTGCTTCTGATTATGGCTTGATTGTTCCAAATGGAAGTTATGCAATCTCAGCAAGTCACTGTGTACAGTGCAGTTGCGGCCCAGGGAGCCGCAAGTAAGTACTCCCTCCGTTCCTAAATAAGTGTCTTGTATTCCTAATCGTGCGTTCCTATTTAAGTGTTCGGTTTCTATTTTAGACATACACTTATCCCACTTTTCCATAAATCATGACTAGGCTTCTTACACATTCTACACTTTTCCCACTTTTCCATCTCCGCATCCACTTTTTATTTGCATTTTATCAATAAACAATCATCTACTTTATCCCCATCCCCATAAAAACACTCACAATCATTGTTTTTCTTACACACTTTTCACATTTCTTAATACCATGTTTTCCATAAAATGAGACACTTATTTAGGAACGAAGGGAGTAACTAATACTATTATAGATGCTTCACATTTCTTCTTCTTTGAAGGCATTGTCTTATTTGTAGATTAACTTCATTTCAACACGGTGTGGTTGTGTTTACAGTCTGTATTGCATGCCAGCATCATTGGCAGTATCTTGTTCAAGTATGCAATGCGCTGGTAGCAACCTTATGCTTGGGAATTCTACTATTCAACAAAGCAGTGCTGGTTGCAATGTGACTTCTTGTAATTACAATGGTTACGCAAATGGCACGATTCTTACAACGTATGTTAATATGTTTGTTTATTAGCTGTCATATTTCCTTCTTTTTTCTTGAGTGTGTGATTTATGGTTGAAAGTTCTCTGGATGAAATATTTTATTGGTGCTCTTCAGGTTGTCAACATCCCTTCAACCTCGCTGCCCAGGTAAAACCTTGAACTAATGCCACAAGTTTGAATTGTATATGTATGCCGATTGTTGGATGTTTATGCATGGGTTACATACTTACATCTTGTATCCAGTTTAATGCTTCTGTAACTTCCTGATTAATTTGCTTTTTTTAAGGATGATTAAGTTTTTTTTTTCCGCGTTATGAGTTTGCATTGCTTGAGTCATTGTGCTGTTAGTCTCTGGAAATCTGAGTGGTATTCTAAAAAACTATGCTGCCCGTAGGCATTCAAAAGATACGGTATGAGGTCTGATAATGCAATAATTTATAAGTTGCGTTGATTTCTGAGGTTCCATACATCCACATCAACAAGAAGAGTCTGAAATCCATAAGGAACAGCCATAAACGTAATGTGCATAGGGAAAAACTTTCGTATCATGAAAAATCTAGTACTAGTACCATACTCATAATTAGATATATTAAATAATTAGAAAGCGGGGTAGAAAAGTTACTAAAAATTGAAGTGTGACTCCTAATAAAATACGGCCGGAAATGGTAGGTGTGACTCCTGAAAAAATACGGAGGGAGTATTACATCAACATATTTAACAAAGGCAGTTTGCCGTCACACACAAAAAAAAAAAAAACAAAGGCAGTTGGATACTTGAATGTAAATATGGTCGTGGGCCGGGTCGGGCACACTGCCATGGCCTGAACTGGCCCGCCGCACTATGCCCACTTTGCATTTGGATGGGCCGTGCCGAGTCGGAAATGTAAAAAATAGGGCCAGGTCCAAGGTCCCTCGTGTCGGGCCGTCGTGCCTAAGCCTAATTTTACTAAATTTAACGTGCTTTGTCGTGCTGGGTGGGTCGGGTCGTGCTGTGCTTTGTCATGCTTTTTCCAAAAAAATGCAACCCAGGCCCGGCTCACGAATTTGTACCCGTGCTTTTTTCGTGCCCGTGCTAGGCGGTTATTTTTTCGTATCGTGATGGGTTAGGCCTCGGCCAGCCCATCCCACAGCCATCTTTACTTAGATGTAATGCAGTAATGATCAGAAATAATTCTAGGTTACTCCTTTTTTCAAGTGGCCATGCATTACATACCCAAGTTTTCTACTTTCACAATTTGTATCATTGATACACTTATTGACTCTGATCTGTTCAAATCTTGAAACATTACAGGCCCTCAGCAATTCCCTGCAGTAACTCCACCTCCAACTACAGCTACCCGTGACTCCATTTACGCCCCGGCATCCGCTCCATCACCATCACCCTTACACGCAGGAGGAACTATGATACCCGGATCCGGAACCGCGGGCTTGCCCCCGTTAGGTTCGCTTCCAGGAAGCGGGCCCGTTGCAAGCTTCGGGGGTTCCACCTCAGCTTCCTCTTTGGTAAACCCATTTGCTGCCGCCTCCCACGTCACGGTTGCTTTATGTGTGCTCCTCGTGGCTCGCCAAGGGTTCTAATGTTCTGGTCAGGTTGGACTTGTTTGTTGTATCTATGTGACCTAATTTTAAACAATTACTAATTCTTGGATGCTTAATTGGTGAGTTTTTTTTTGGGTATTATTAGTAGAGAATTTGGTTAAACTCATCATGTAATGTGATCTTTGTTCAATGACAAAACTGGGTTTCTGCAATTGGCTGTTGTTTTCTCCTTTCTTGATATAACTTCCTGAACTTGTGGAGAGTTCTGAATGACCAGAAGCTGGATATAAGAATTACTCCGTATGTTATTCCATATTCATTTTAGTGTTACCGGTAGTAACTTATGTGTTCCTTTAAACAAGTTAGGTCATTTTCTTTTGAACTGAACTAAACTGAACAGAACAATGGAATGCTCATGAACTGAAAAATAAGCCATGAAATTGAAATGAAGCAAAAAAGTCAGGGCCTTAAAGTACCTTCACCT ATGCCAAACTCAAACCCCACTTCAAATCAACTCCTTTTCACACTATTCATCCTAACAATCATCTCAATTCCATCAATTATCACCTCAAAATCAACCATTGAACCCTGCTCAAACTCAGACTCCTGCAATGCAATGCTAGGTTACACTCTCTACACAGACCTCAAAGTTTCCGAAGTTGCTTCCCTCTTCGGAATCGACCCAATCTCTCTCCTAACAGCAAACTCAGTCGACATTTCAATCCCAGATGTCGAAAACCACATTTTACCCTCACAACTATTCCTCAGAATCCCAATTAGTTGCTCCTGTGTTGATGGAATCAGAAAATCAGTCTCTACCCATTACAAAACCAGGCCTTCTGATTCAATAACCTCGATTTCTGACACCATTTATGGGGGTTTAGTTTCTGCTGATCAGCTTAAAGAAGCTAACTCCATTACTGATTCTTCTGTTCTTGATGTTGGACAGAGTTTGGTTGTGCCTTTGCCTTGTACTTGTTTTAATAATACTGATAACTCTTTGCCTGCTATCTATTTGTCATATGTTGTTCAGCCTGTTGATACATTGGTTGGTATTGCGGCGATGTATCGGAATACTATTACTGATTTGATGAATGTTAATGCTATGGGAAGTACTGCTATTTTTCCTGGGGATATACTTTCTGTGCCATTGTCTGCGTGCGCATCGAACTTTCCGAGTTCTGCTTCTGATTATGGCTTGATTGTTCCAAATGGAAGTTATGCAATCTCAGCAAGTCACTGTGTACAGTGCAGTTGCGGCCCAGGGAGCCGCAATCTGTATTGCATGCCAGCATCATTGGCAGTATCTTGTTCAAGTATGCAATGCGCTGGTAGCAACCTTATGCTTGGGAATTCTACTATTCAACAAAGCAGTGCTGGTTGCAATGTGACTTCTTGTAATTACAATGGTTACGCAAATGGCACGATTCTTACAACGTTGTCAACATCCCTTCAACCTCGCTGCCCAGGCCCTCAGCAATTCCCTGCAGTAACTCCACCTCCAACTACAGCTACCCGTGACTCCATTTACGCCCCGGCATCCGCTCCATCACCATCACCCTTACACGCAGGAGGAACTATGATACCCGGATCCGGAACCGCGGGCTTGCCCCCGTTAGGTTCGCTTCCAGGAAGCGGGCCCGTTGCAAGCTTCGGGGGTTCCACCTCAGCTTCCTCTTTGGTAAACCCATTTGCTGCCGCCTCCCACGTCACGGTTGCTTTATGTGTGCTCCTCGTGGCTCGCCAAGGGTTCTAATGTTCTGGTCAGGTTGGACTTGTTTGTTGTATCTATGTGACCTAATTTTAAACAATTACTAATTCTTGGATGCTTAATTGGTGAGTTTTTTTTTGGGTATTATTAGTAGAGAATTTGGTTAAACTCATCATGTAATGTGATCTTTGTTCAATGACAAAACTGGGTTTCTGCAATTGGCTGTTGTTTTCTCCTTTCTTGATATAACTTCCTGAACTTGTGGAGAGTTCTGAATGACCAGAAGCTGGATATAAGAATTACTCCGTATGTTATTCCATATTCATTTTAGTGTTACCGGTAGTAACTTATGTGTTCCTTTAAACAAGTTAGGTCATTTTCTTTTGAACTGAACTAAACTGAACAGAACAATGGAATGCTCATGAACTGAAAAATAAGCCATGAAATTGAAATGAAGCAAAAAAGTCAGGGCCTTAAAGTACCTTCACCT ATGCCAAACTCAAACCCCACTTCAAATCAACTCCTTTTCACACTATTCATCCTAACAATCATCTCAATTCCATCAATTATCACCTCAAAATCAACCATTGAACCCTGCTCAAACTCAGACTCCTGCAATGCAATGCTAGGTTACACTCTCTACACAGACCTCAAAGTTTCCGAAGTTGCTTCCCTCTTCGGAATCGACCCAATCTCTCTCCTAACAGCAAACTCAGTCGACATTTCAATCCCAGATGTCGAAAACCACATTTTACCCTCACAACTATTCCTCAGAATCCCAATTAGTTGCTCCTGTGTTGATGGAATCAGAAAATCAGTCTCTACCCATTACAAAACCAGGCCTTCTGATTCAATAACCTCGATTTCTGACACCATTTATGGGGGTTTAGTTTCTGCTGATCAGCTTAAAGAAGCTAACTCCATTACTGATTCTTCTGTTCTTGATGTTGGACAGAGTTTGGTTGTGCCTTTGCCTTGTACTTGTTTTAATAATACTGATAACTCTTTGCCTGCTATCTATTTGTCATATGTTGTTCAGCCTGTTGATACATTGGTTGGTATTGCGGCGATGTATCGGAATACTATTACTGATTTGATGAATGTTAATGCTATGGGAAGTACTGCTATTTTTCCTGGGGATATACTTTCTGTGCCATTGTCTGCGTGCGCATCGAACTTTCCGAGTTCTGCTTCTGATTATGGCTTGATTGTTCCAAATGGAAGTTATGCAATCTCAGCAAGTCACTGTGTACAGTGCAGTTGCGGCCCAGGGAGCCGCAATCTGTATTGCATGCCAGCATCATTGGCAGTATCTTGTTCAAGTATGCAATGCGCTGGTAGCAACCTTATGCTTGGGAATTCTACTATTCAACAAAGCAGTGCTGGTTGCAATGTGACTTCTTGTAATTACAATGGTTACGCAAATGGCACGATTCTTACAACGTTGTCAACATCCCTTCAACCTCGCTGCCCAGGCCCTCAGCAATTCCCTGCAGTAACTCCACCTCCAACTACAGCTACCCGTGACTCCATTTACGCCCCGGCATCCGCTCCATCACCATCACCCTTACACGCAGGAGGAACTATGATACCCGGATCCGGAACCGCGGGCTTGCCCCCGTTAGGTTCGCTTCCAGGAAGCGGGCCCGTTGCAAGCTTCGGGGGTTCCACCTCAGCTTCCTCTTTGGTAAACCCATTTGCTGCCGCCTCCCACGTCACGGTTGCTTTATGTGTGCTCCTCGTGGCTCGCCAAGGGTTCTAA MPNSNPTSNQLLFTLFILTIISIPSIITSKSTIEPCSNSDSCNAMLGYTLYTDLKVSEVASLFGIDPISLLTANSVDISIPDVENHILPSQLFLRIPISCSCVDGIRKSVSTHYKTRPSDSITSISDTIYGGLVSADQLKEANSITDSSVLDVGQSLVVPLPCTCFNNTDNSLPAIYLSYVVQPVDTLVGIAAMYRNTITDLMNVNAMGSTAIFPGDILSVPLSACASNFPSSASDYGLIVPNGSYAISASHCVQCSCGPGSRNLYCMPASLAVSCSSMQCAGSNLMLGNSTIQQSSAGCNVTSCNYNGYANGTILTTLSTSLQPRCPGPQQFPAVTPPPTTATRDSIYAPASAPSPSPLHAGGTMIPGSGTAGLPPLGSLPGSGPVASFGGSTSASSLVNPFAAASHVTVALCVLLVARQGF Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo23730.1 vs. NCBI nr
Match: gi|902236693|gb|KNA24491.1| (hypothetical protein SOVF_014880 [Spinacia oleracea]) HSP 1 Score: 812.8 bits (2098), Expect = 2.900e-232 Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 1
BLAST of Spo23730.1 vs. NCBI nr
Match: gi|731312485|ref|XP_010675099.1| (PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 660.6 bits (1703), Expect = 1.800e-186 Identity = 348/419 (83.05%), Postives = 380/419 (90.69%), Query Frame = 1
BLAST of Spo23730.1 vs. NCBI nr
Match: gi|823237326|ref|XP_012451313.1| (PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Gossypium raimondii]) HSP 1 Score: 564.7 bits (1454), Expect = 1.400e-157 Identity = 300/418 (71.77%), Postives = 346/418 (82.78%), Query Frame = 1
BLAST of Spo23730.1 vs. NCBI nr
Match: gi|728808590|gb|KHF98389.1| (hypothetical protein F383_10978 [Gossypium arboreum]) HSP 1 Score: 556.6 bits (1433), Expect = 3.700e-155 Identity = 303/421 (71.97%), Postives = 344/421 (81.71%), Query Frame = 1
BLAST of Spo23730.1 vs. NCBI nr
Match: gi|823136352|ref|XP_012467934.1| (PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Gossypium raimondii]) HSP 1 Score: 555.4 bits (1430), Expect = 8.300e-155 Identity = 303/423 (71.63%), Postives = 343/423 (81.09%), Query Frame = 1
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RY94_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_014880 PE=4 SV=1) HSP 1 Score: 812.8 bits (2098), Expect = 2.000e-232 Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 1
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D681_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g007630 PE=4 SV=1) HSP 1 Score: 660.6 bits (1703), Expect = 1.300e-186 Identity = 348/419 (83.05%), Postives = 380/419 (90.69%), Query Frame = 1
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Match: A0A0D2U956_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G049700 PE=4 SV=1) HSP 1 Score: 564.7 bits (1454), Expect = 9.500e-158 Identity = 300/418 (71.77%), Postives = 346/418 (82.78%), Query Frame = 1
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MCB1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10978 PE=4 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 2.600e-155 Identity = 303/421 (71.97%), Postives = 344/421 (81.71%), Query Frame = 1
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QH23_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G221700 PE=4 SV=1) HSP 1 Score: 555.4 bits (1430), Expect = 5.800e-155 Identity = 303/423 (71.63%), Postives = 343/423 (81.09%), Query Frame = 1
BLAST of Spo23730.1 vs. ExPASy Swiss-Prot
Match: LYM1_ARATH (LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=LYM1 PE=1 SV=1) HSP 1 Score: 508.4 bits (1308), Expect = 7.300e-143 Identity = 269/407 (66.09%), Postives = 324/407 (79.61%), Query Frame = 1
BLAST of Spo23730.1 vs. ExPASy Swiss-Prot
Match: LYM3_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM3 PE=1 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 3.400e-132 Identity = 242/393 (61.58%), Postives = 309/393 (78.63%), Query Frame = 1
BLAST of Spo23730.1 vs. ExPASy Swiss-Prot
Match: LYM2_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=LYM2 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.600e-25 Identity = 93/312 (29.81%), Postives = 161/312 (51.60%), Query Frame = 1
BLAST of Spo23730.1 vs. ExPASy Swiss-Prot
Match: CEBIP_ORYSJ (Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 8.300e-22 Identity = 85/322 (26.40%), Postives = 159/322 (49.38%), Query Frame = 1
BLAST of Spo23730.1 vs. TAIR (Arabidopsis)
Match: AT1G21880.2 (lysm domain GPI-anchored protein 1 precursor) HSP 1 Score: 508.4 bits (1308), Expect = 4.100e-144 Identity = 269/407 (66.09%), Postives = 324/407 (79.61%), Query Frame = 1
BLAST of Spo23730.1 vs. TAIR (Arabidopsis)
Match: AT1G77630.1 (Peptidoglycan-binding LysM domain-containing protein) HSP 1 Score: 473.0 bits (1216), Expect = 1.900e-133 Identity = 242/393 (61.58%), Postives = 309/393 (78.63%), Query Frame = 1
BLAST of Spo23730.1 vs. TAIR (Arabidopsis)
Match: AT2G17120.1 (lysm domain GPI-anchored protein 2 precursor) HSP 1 Score: 118.6 bits (296), Expect = 9.200e-27 Identity = 93/312 (29.81%), Postives = 161/312 (51.60%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23730.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23730.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23730.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo23730.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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