Spo23596.1 (mRNA) | SpinachBase

Overview


Name	Spo23596.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Rhamnogalacturonate lyase family protein
Location	chr2 : 52016081 .. 52017192 (+)
Sequence length	681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTAAATTTTTAAGCTCCTATGAGACAACCATATGCATAAGACTGTTGATGTCAGCATTAAAGAAGATAACTATTTGACTAAAAACTATGACTATTTGATTGGAGTATAATTACTAACACAGAGTAGTAGAATATACCTATTTGATTAAAAAAATATACTTTAAATTATTGGGTAAGAAGTTGGTCTTATACATAAGACCGCCTTAACGCCTTACTCCATAAGTTTTTGTAAATGGTTTATCGCTTATCGGCCCCCCTTTTTGGTTTGTTATTGTGGTCAAAATCAAACATACGTTTTTGGTAAACTTTGACCAAAAATACGTTTTGTAAATGATTTTATTATTGTGGTTTGAAAATTGGGCTTTTAAGCCGAAAATGAAACTATAATTTAAATGATTATTTTTGCTTAAAAGACCGGTAAATGTTATATAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAAGGAATATTGTATGATTATCTACGTCTTGAATGCCCTCCTACTCCAAATGCAATCTAAATAATACACAAGTTGTATTATTTTCCACTATTATCTTTCAGTTCCTTACCTTTTATTTCTCTCACTCCATATTCCGCAAACGGTTTCTTATAATGATTCATGTTAGCCGACCTTATCATTGTGGGACTGAGGCTTAATTGTTGTATTATCTTTCGGATCCTTATCACTTTGTATGACGAAGTACTTGTATTTAATTGATTTATTGTATATATTTTTTTTCATTTCCTTATTGTAAAGTATTAATTTGATATATCATATTGTTTTACTAGCTAACATAAATGAATAATAAAGTGAATGATTTAGTATGATACCCAA

mRNA sequence

ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAAGGAATATTGTATGATTATCTACGTCTTGAATGCCCTCCTACTCCAAATGCAATCTAAATAATACACAAGTTGTATTATTTTCCACTATTATCTTTCAGTTCCTTACCTTTTATTTCTCTCACTCCATATTCCGCAAACGGTTTCTTATAATGATTCATGTTAGCCGACCTTATCATTGTGGGACTGAGGCTTAATTGTTGTATTATCTTTCGGATCCTTATCACTTTGTATGACGAAGTACTTGTATTTAATTGATTTATTGTATATATTTTTTTTCATTTCCTTATTGTAAAGTATTAATTTGATATATCATATTGTTTTACTAGCTAACATAAATGAATAATAAAGTGAATGATTTAGTATGATACCCAA

Coding sequence (CDS)

ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAA

Protein sequence

MSGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23596	Spo23596	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23596.1	Spo23596.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23596.1.exon.1	Spo23596.1.exon.1	exon
Spo23596.1.exon.2	Spo23596.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23596.1.CDS.1	Spo23596.1.CDS.1	CDS
Spo23596.1.CDS.2	Spo23596.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23596.1.utr3p.1	Spo23596.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo23596.1 vs. NCBI nr
Match: gi|902237331|gb|KNA24756.1| (hypothetical protein SOVF_012930 [Spinacia oleracea])

HSP 1 Score: 216.1 bits (549), Expect = 2.900e-53
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1


		  
Query: 2   SGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 61
           +GCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN
Sbjct: 20  NGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 79

Query: 62  SIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF 103
           SIARHGSHGLHWLYDAEIQGSKFVKGD TLFLTQPRNQSPF
Sbjct: 80  SIARHGSHGLHWLYDAEIQGSKFVKGDKTLFLTQPRNQSPF 120

[Close]

BLAST of Spo23596.1 vs. NCBI nr
Match: gi|731311840|ref|XP_010671338.1| (PREDICTED: rhamnogalacturonate lyase B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.6 bits (327), Expect = 1.600e-27
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1


		  
Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +ATLAEVQVR+NDP ANRP+FTTGL+GRDNSIARHG HGL+WLY+ +IQGS
Sbjct: 561 IYKLRLAIASATLAEVQVRVNDPKANRPVFTTGLMGRDNSIARHGIHGLYWLYNVDIQGS 620

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
           K V+GDN L+LTQPRNQSPF
Sbjct: 621 KLVQGDNVLYLTQPRNQSPF 640

[Close]

BLAST of Spo23596.1 vs. NCBI nr
Match: gi|698500308|ref|XP_009795926.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 576 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 635

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 636 LVQGDNTIYLGQPRNQSPF 654

[Close]

BLAST of Spo23596.1 vs. NCBI nr
Match: gi|697172975|ref|XP_009595414.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 577 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 636

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 637 LVQGDNTIYLGQPRNQSPF 655

[Close]

BLAST of Spo23596.1 vs. NCBI nr
Match: gi|697172977|ref|XP_009595415.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 544 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 603

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 604 LVQGDNTIYLGQPRNQSPF 622

[Close]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ16_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_012930 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.000e-53
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1


		  
Query: 2   SGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 61
           +GCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN
Sbjct: 20  NGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 79

Query: 62  SIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF 103
           SIARHGSHGLHWLYDAEIQGSKFVKGD TLFLTQPRNQSPF
Sbjct: 80  SIARHGSHGLHWLYDAEIQGSKFVKGDKTLFLTQPRNQSPF 120

[Close]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D883_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005360 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.100e-27
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1


		  
Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +ATLAEVQVR+NDP ANRP+FTTGL+GRDNSIARHG HGL+WLY+ +IQGS
Sbjct: 561 IYKLRLAIASATLAEVQVRVNDPKANRPVFTTGLMGRDNSIARHGIHGLYWLYNVDIQGS 620

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
           K V+GDN L+LTQPRNQSPF
Sbjct: 621 KLVQGDNVLYLTQPRNQSPF 640

[Close]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: K4BUA4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.700e-25
Identity = 53/79 (67.09%), Postives = 69/79 (87.34%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+N+P+ NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 577 YKLRIAIASATLAEVQVRVNNPSTNRPVFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 636

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 637 LVQGDNTIYLGQPRNQSPF 655

[Close]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A022QSM2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002710mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.700e-24
Identity = 50/80 (62.50%), Postives = 69/80 (86.25%), Query Frame = 1


		  
Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +A+LAE+QVR+N+P ANRP+F++GLIGRDNSIARHG HGLHWLY+ EI G 
Sbjct: 548 IYKLRVALASASLAELQVRVNNPKANRPLFSSGLIGRDNSIARHGIHGLHWLYNIEINGD 607

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
             V+GDNT++L+QPR+QSPF
Sbjct: 608 LLVEGDNTIYLSQPRSQSPF 627

[Close]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: K4BUA3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.700e-24
Identity = 51/79 (64.56%), Postives = 68/79 (86.08%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+N+P+ N+P+FTTGL GRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 545 YKLRIAIASATLAEVQVRVNNPSTNQPLFTTGLFGRDNSIARHGIHGLYWLYNIDIQGNL 604

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPR+QSPF
Sbjct: 605 LVQGDNTIYLGQPRHQSPF 623

[Close]

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09890.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.100e-23
Identity = 46/71 (64.79%), Postives = 63/71 (88.73%), Query Frame = 1


		  
Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           +AT +E+Q+R+N+ NA+ P+FT+GLIGRDNSIARHG HGL+WL++ E+ GSK ++G+NTL
Sbjct: 534 SATFSELQIRVNNANAS-PMFTSGLIGRDNSIARHGIHGLYWLFNVEVAGSKLLEGENTL 593

Query: 92  FLTQPRNQSPF 103
           FLTQPR+ SPF
Sbjct: 594 FLTQPRSTSPF 603

[Close]

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09910.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 103.6 bits (257), Expect = 7.300e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ +   +ATLAE+Q+R+ND  A RP+FTTGLIGRDNSIARHG HG++ LY   I G++
Sbjct: 582 YKLRVAIASATLAELQIRINDAEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNIPGNR 641

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT+FL QPR   PF
Sbjct: 642 LVQGDNTIFLKQPRCNGPF 660

[Close]

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT4G24430.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-18
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1


		  
Query: 24  WEIGIPDRTATLAEVQVRMNDPNANR--PIFTTGLIGRDNSIARHGSHGLHWLYDAEIQG 83
           ++I I   TA +AE+QVRMND +  +  PIFTTG+IG DN+IARHG HG++ LY+ ++  
Sbjct: 545 YKIRIALATANVAELQVRMNDDDTEKTTPIFTTGVIGHDNAIARHGIHGIYRLYNVDVPS 604

Query: 84  SKFVKGDNTLFLTQ 96
            K V+GDNTLFLTQ
Sbjct: 605 EKLVEGDNTLFLTQ 618

[Close]

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT2G22620.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.700e-17
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 1


		  
Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           +A  +E+Q+R+NDP ++  IFTTG IG+DN+IARHG HGL+ LY  ++ G+    GDNT+
Sbjct: 592 SAADSELQIRINDPKSDA-IFTTGFIGKDNAIARHGIHGLYRLYSIDVAGNLLSVGDNTI 651

Query: 92  FLTQPRNQSPF 103
           FLTQ R+++PF
Sbjct: 652 FLTQTRSRTPF 661

[Close]

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09880.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 84.3 bits (207), Expect = 4.600e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1


		  
Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           T+ +AE+QVR+ND +A+ P+F T  IGRDN+IARHG HGL+WLY   +  +    G+NT+
Sbjct: 539 TSNVAELQVRVNDLSADPPLFRTEQIGRDNTIARHGIHGLYWLYSVNVPAASLHVGNNTI 598

Query: 92  FLTQPRNQSPF 103
           +LTQ    SPF
Sbjct: 599 YLTQALATSPF 609

The following BLAST results are available for this feature:

BLAST of Spo23596.1 vs. NCBI nr
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
BLAST of Spo23596.1 vs. ExPASy Swiss-Prot
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)

BLAST of Spo23596.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237331\|gb\|KNA24756.1\|	2.9e-53	98.0	hypothetical protein SOVF_0129...	[more]
gi\|731311840\|ref\|XP_010671338.1\|	1.6e-27	71.2	PREDICTED: rhamnogalacturonate...	[more]
gi\|698500308\|ref\|XP_009795926.1\|	8.7e-26	69.6	PREDICTED: probable rhamnogala...	[more]
gi\|697172975\|ref\|XP_009595414.1\|	8.7e-26	69.6	PREDICTED: probable rhamnogala...	[more]
gi\|697172977\|ref\|XP_009595415.1\|	8.7e-26	69.6	PREDICTED: probable rhamnogala...	[more]

BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZ16_SPIOL	2.0e-53	98.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8D883_BETVU	1.1e-27	71.2	Uncharacterized protein OS=Bet...	[more]
K4BUA4_SOLLC	6.7e-25	67.0	Uncharacterized protein OS=Sol...	[more]
A0A022QSM2_ERYGU	5.7e-24	62.5	Uncharacterized protein OS=Ery...	[more]
K4BUA3_SOLLC	9.7e-24	64.5	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo23596.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G09890.1	1.1e-23	64.7	Rhamnogalacturonate lyase fami...	[more]
AT1G09910.1	7.3e-23	58.2	Rhamnogalacturonate lyase fami...	[more]
AT4G24430.1	1.4e-18	56.7	Rhamnogalacturonate lyase fami...	[more]
AT2G22620.1	2.7e-17	53.5	Rhamnogalacturonate lyase fami...	[more]
AT1G09880.1	4.6e-17	52.1	Rhamnogalacturonate lyase fami...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008979	Galactose-binding domain-like	GENE3D	2.60.120.260		coord: 36..100 score: 8.5
IPR008979	Galactose-binding domain-like	unknown	SSF49785	Galactose-binding domain-like	coord: 19..100 score: 2.13
None	No IPR available	PANTHER	PTHR32018	FAMILY NOT NAMED	coord: 33..102 score: 4.5
None	No IPR available	PANTHER	PTHR32018:SF8	RHAMNOGALACTURONATE LYASE-LIKE PROTEIN	coord: 33..102 score: 4.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003824	catalytic activity