Spo23441.1 (mRNA)

Overview
NameSpo23441.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionRmlC-like cupins superfamily protein
Locationchr3 : 24654610 .. 24654930 (+)
Sequence length321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

mRNA sequence

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Coding sequence (CDS)

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Protein sequence

MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23441Spo23441gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23441.1Spo23441.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23441.1.exon.1Spo23441.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23441.1.CDS.1Spo23441.1.CDS.1CDS


Homology
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|902182919|gb|KNA10012.1| (hypothetical protein SOVF_148320 [Spinacia oleracea])

HSP 1 Score: 231.5 bits (589), Expect = 6.900e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|731366911|ref|XP_010695324.1| (PREDICTED: uncharacterized protein LOC104907987 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 67  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 126

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 127 VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 172
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|870844892|gb|KMS97754.1| (hypothetical protein BVRB_5g124250 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|661885047|emb|CDP11330.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 200.7 bits (509), Expect = 1.300e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|657975610|ref|XP_008379657.1| (PREDICTED: uncharacterized protein LOC103442632 [Malus domestica])

HSP 1 Score: 198.4 bits (503), Expect = 6.500e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MR+EKPLEELY++RVERKVS ERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRVEKPLEELYQVRVERKVSQERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLVRYPKW EADLWFN  YQERYSFRAYGDD
Sbjct: 100 VVPEGSQQYMQFVAGDLVRYPKWLEADLWFNGPYQERYSFRAYGDD 145
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148320 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.800e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8X6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124250 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.700e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A068US20_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033517001 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.100e-49
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: M5WSX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013006mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.000e-47
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY++RVERKVSPERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRIEKPLEELYQVRVERKVSPERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FN  YQERY FRAYGDD
Sbjct: 100 VVPEGSKQYMRFVAGDLVRYPKWLEADLFFNGPYQERYRFRAYGDD 145
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A059A0X3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00770 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.700e-47
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVERKVS ERL ELGVSRW+ WKTGKCRLPWDW VDQLVY+EEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERKVSKERLEELGVSRWSVWKTGKCRLPWDWQVDQLVYVEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLV YPKWFEADL+FN  YQERYSFRAYGDD
Sbjct: 98  VVPEGSERYMQFLAGDLVLYPKWFEADLYFNGPYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32650.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32180.1 (plastid transcriptionally active 18)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.200e-9
Identity = 25/88 (28.41%), Postives = 41/88 (46.59%), Query Frame = 1 

		  

Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E+     +L +LGV  W  W     + PW +   +  Y+ +G+V+V P GS   +  
Sbjct: 46  ITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEI 105

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
           +AGD V +PK        +    + Y F
Sbjct: 106 EAGDFVVFPKGMSCTWDVSVAVDKHYQF 133
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT3G04300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-8
Identity = 28/88 (31.82%), Postives = 43/88 (48.86%), Query Frame = 1 

		  

Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E   S  RL++LGV  W  W     +    +   +  Y+ +G+V+V P+GS  ++ F
Sbjct: 3   IVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEF 62

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
            AGDLV  PK        + F  + Y F
Sbjct: 63  GAGDLVTIPKGLSCTWDVSLFIDKHYKF 90
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10290.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.100e-8
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 

		  

Query: 9  ELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEG--- 68
          E++ ++V R+ S  +L ELGV+ W  W++   + PW +   + +Y  EG+++V  E    
Sbjct: 16 EIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHK 75

Query: 69 SKHYMSFKAGDLVRYPK 83
              + F AGDLV +P+
Sbjct: 76 EGEALEFVAGDLVVFPQ 92
The following BLAST results are available for this feature:
BLAST of Spo23441.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902182919|gb|KNA10012.1|6.9e-58100.hypothetical protein SOVF_1483... [more]
gi|731366911|ref|XP_010695324.1|3.9e-5392.4PREDICTED: uncharacterized pro... [more]
gi|870844892|gb|KMS97754.1|3.9e-5392.4hypothetical protein BVRB_5g12... [more]
gi|661885047|emb|CDP11330.1|1.3e-4884.9unnamed protein product [Coffe... [more]
gi|657975610|ref|XP_008379657.1|6.5e-4884.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QRT7_SPIOL4.8e-58100.Uncharacterized protein OS=Spi... [more]
A0A0J8B8X6_BETVU2.7e-5392.4Uncharacterized protein OS=Bet... [more]
A0A068US20_COFCA9.1e-4984.9Uncharacterized protein OS=Cof... [more]
M5WSX4_PRUPE1.0e-4785.8Uncharacterized protein OS=Pru... [more]
A0A059A0X3_EUCGR1.7e-4784.9Uncharacterized protein OS=Euc... [more]
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BLAST of Spo23441.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G32650.12.0e-4779.2RmlC-like cupins superfamily p... [more]
AT2G32180.12.0e-4779.2plastid transcriptionally acti... [more]
AT4G10300.18.2e-928.4RmlC-like cupins superfamily p... [more]
AT3G04300.11.4e-831.8RmlC-like cupins superfamily p... [more]
AT4G10290.19.1e-832.4RmlC-like cupins superfamily p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 25..98
score: 9.6
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 19..86
score: 5.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 6..98
score: 7.1
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 1..106
score: 1.1
NoneNo IPR availablePANTHERPTHR33271:SF7PLASTID TRANSCRIPTIONALLY ACTIVE 18coord: 1..106
score: 1.1