Spo23413.1 (mRNA)

Overview
NameSpo23413.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionGlycine cleavage system H protein
Locationchr6 : 43471656 .. 43473806 (+)
Sequence length1073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTGTCATACCCTTAAATCCTCCCTATAAACTTTTTTCTTTTAATATATACCCTCTCCATTTCACAAAGATAAAATGGGGGAGTATATTGAAAGCAATAACACCCAAAAAGATTTTTTTTTATAAAAAAAAAGTGGGACAAAGGGATGAATAAAGGTGTGACTTGTAAATGAAGATGAGGCTTTCATTATCCACCATTCAAAAATGATAAAAGACAATGAAATATAGCCTTAGCTTCCCACATTCCTTCTTTATCAAAACATAACCAAAAAAAACACAGAGAAAAAACAGAAGCCCTGCTTAAAAAAAATAAACACAAGAAAAAATGGCATTGAGAATGTGGGCTTCTTCTACAGCTAACACCCTTGGCCTCTCTTGTGCCTCTAAAGCTCTTCCTTACCCTGCATTTTCTCTCTCCAGATGCTTTTCCACTGGTAATTTTTTTTTTTTTAAATCTTTTATATAATTTCGACGAGTTTGTAGAATAATCTTTTATACAAGTTCAGATAATATAAGTTCAGTTAATATAAGTTTGTTGATTGTTGTTTTGTTTTTGGTAGTTTTGGATGGATTGAAGTATGCATCATCACATGAATGGGTGAAACATGAAGGTTCAGTGGCAACCATTGGTGTTACTGATCATGCTCAGGTTCGTCTCTGTATACAATATTGCTTAAAAAAAAGATCTGCATAAGATTTATGTATGCATAAGATTTACTACGTAAGATTTTTGTAGAAAGTTAAAGTCAAAAAATTGTGACAAAGAGACTGCATAAGATTTACTACGTAAGATTTTTGTAGAAAGAACATTTTAAAGTCTAAAAATTGTGACAAAGAGACTTTCTAAAAAATTTGTTATGAGATGTGACTTAAAATTGTTTTTTTTTGTTTTGTTTTGAGATGAGATCTTTTCCCATTTTCCAATAATTGACTACAATTGTCCGGCTTTGAATCACACGTGCCGGTTAAAAATAATTTCAGATGAACACTAAGGTCAATAAAACTCGAATTGGACGAATTGATGCGAATAAAAGTTCGGGATTTTTCCCTTGTTACCTTGTTCGAATAGCAATGACTTGTTATGGGATGTTTTGTTAAGTATCGCGCACGAATTAAAGAAATGGTCGAAGAAGATGAAGAGGAGAGGGAACAAAGCGGAAGCAAATGTTATTTTTAGGTTTTAGGTTAGTTAGGGGGGAATTGGAGGGAAACTTAATTAAAGTAATAAAAAAAAAACTAATTTTTAGTAAGCACGTGACACGTACGAGTCAACGCCGAAAATTAGAGTTAACCATCGGAAAATTGGTAAAGTTCCCATCTCACAGCAAAAAATCAATTTTACCTACCATCTCAGAACAATTTTTTTTATAAGGTCATTTGTCATAATTTTTGGACTTTAAATGTTTTCTGTGACAAAAAATCCTAAGATTTAAGTATGCATGCATAATAAGATTTGTCTAATATAAATGTATATATATATGGGCAGACCCATCTTGGGGATGTGGTGTTTGCAGAGCTACCAGATGGAGGAGTTGCAGTAACAGCAGGGAAGGCGTTTGCATCAGTTGAGAGTGTCAAAGCCACCAGTGACGTCAATTCTCCCATTTCCGGTGAGATTCTTGAGGTTAACACCAAGCTTTCCGAGACTCCTGGTCTGGTAAGTCTTTCTCTTCCTATGGTGCAGGAAAACAAACTGTTTTAAGTCGAGTTCAGTTCAGAAACTTCAGATCAGTCGTTTCAGGCGTAATATTACTGATGGTTGAATAATGCAGCTTAACTCGAGCCCATACGAGGATGGATGGATGATCAAGGTGAAGCCAAGTAACCCAGCAGAGTTGGAAAGCTTGATGGGTCCTAAAGACTACACAAAGTTCTGTGAGGAAGAAGATGCTCATTAATTAACACATACTGAACAACTTCCATGTTTCTTTGAGCTTGTTTGCTGTTGAATTTGCAAATCTTCATGTATACTTATTAGAGGTGCTAATTTTTCTATCCATGATTTTATAGATTACTTAAATAAGCAATTCAATGCTATACAGGAACGAATCCCAGTAGTAGAAAACCTCTTTTTTTTACCAGAAACAGATTTCATTTCTGAATAACCAGTACTACATCTGCTAAAAACTAAATTGTTAAATATCTACAT

mRNA sequence

GCACTTGTCATACCCTTAAATCCTCCCTATAAACTTTTTTCTTTTAATATATACCCTCTCCATTTCACAAAGATAAAATGGGGGAGTATATTGAAAGCAATAACACCCAAAAAGATTTTTTTTTATAAAAAAAAAGTGGGACAAAGGGATGAATAAAGGTGTGACTTGTAAATGAAGATGAGGCTTTCATTATCCACCATTCAAAAATGATAAAAGACAATGAAATATAGCCTTAGCTTCCCACATTCCTTCTTTATCAAAACATAACCAAAAAAAACACAGAGAAAAAACAGAAGCCCTGCTTAAAAAAAATAAACACAAGAAAAAATGGCATTGAGAATGTGGGCTTCTTCTACAGCTAACACCCTTGGCCTCTCTTGTGCCTCTAAAGCTCTTCCTTACCCTGCATTTTCTCTCTCCAGATGCTTTTCCACTGTTTTGGATGGATTGAAGTATGCATCATCACATGAATGGGTGAAACATGAAGGTTCAGTGGCAACCATTGGTGTTACTGATCATGCTCAGACCCATCTTGGGGATGTGGTGTTTGCAGAGCTACCAGATGGAGGAGTTGCAGTAACAGCAGGGAAGGCGTTTGCATCAGTTGAGAGTGTCAAAGCCACCAGTGACGTCAATTCTCCCATTTCCGGTGAGATTCTTGAGGTTAACACCAAGCTTTCCGAGACTCCTGGTCTGCTTAACTCGAGCCCATACGAGGATGGATGGATGATCAAGGTGAAGCCAAGTAACCCAGCAGAGTTGGAAAGCTTGATGGGTCCTAAAGACTACACAAAGTTCTGTGAGGAAGAAGATGCTCATTAATTAACACATACTGAACAACTTCCATGTTTCTTTGAGCTTGTTTGCTGTTGAATTTGCAAATCTTCATGTATACTTATTAGAGGTGCTAATTTTTCTATCCATGATTTTATAGATTACTTAAATAAGCAATTCAATGCTATACAGGAACGAATCCCAGTAGTAGAAAACCTCTTTTTTTTACCAGAAACAGATTTCATTTCTGAATAACCAGTACTACATCTGCTAAAAACTAAATTGTTAAATATCTACAT

Coding sequence (CDS)

ATGGCATTGAGAATGTGGGCTTCTTCTACAGCTAACACCCTTGGCCTCTCTTGTGCCTCTAAAGCTCTTCCTTACCCTGCATTTTCTCTCTCCAGATGCTTTTCCACTGTTTTGGATGGATTGAAGTATGCATCATCACATGAATGGGTGAAACATGAAGGTTCAGTGGCAACCATTGGTGTTACTGATCATGCTCAGACCCATCTTGGGGATGTGGTGTTTGCAGAGCTACCAGATGGAGGAGTTGCAGTAACAGCAGGGAAGGCGTTTGCATCAGTTGAGAGTGTCAAAGCCACCAGTGACGTCAATTCTCCCATTTCCGGTGAGATTCTTGAGGTTAACACCAAGCTTTCCGAGACTCCTGGTCTGCTTAACTCGAGCCCATACGAGGATGGATGGATGATCAAGGTGAAGCCAAGTAACCCAGCAGAGTTGGAAAGCTTGATGGGTCCTAAAGACTACACAAAGTTCTGTGAGGAAGAAGATGCTCATTAA

Protein sequence

MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIGVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSETPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23413Spo23413gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23413.1Spo23413.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23413.1.exon.1Spo23413.1.exon.1exon
Spo23413.1.exon.2Spo23413.1.exon.2exon
Spo23413.1.exon.3Spo23413.1.exon.3exon
Spo23413.1.exon.4Spo23413.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23413.1.utr5p.1Spo23413.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23413.1.CDS.1Spo23413.1.CDS.1CDS
Spo23413.1.CDS.2Spo23413.1.CDS.2CDS
Spo23413.1.CDS.3Spo23413.1.CDS.3CDS
Spo23413.1.CDS.4Spo23413.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23413.1.utr3p.1Spo23413.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo23413.1 vs. NCBI nr
Match: gi|902186682|gb|KNA10762.1| (hypothetical protein SOVF_141370 [Spinacia oleracea])

HSP 1 Score: 328.9 bits (842), Expect = 4.900e-87
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET
Sbjct: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 164
[Close]
BLAST of Spo23413.1 vs. NCBI nr
Match: gi|731332569|ref|XP_010677275.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 315.8 bits (808), Expect = 4.300e-83
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN+LG+SCASKALP+PAFSLSRCFSTVLD LKYASSHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANSLGISCASKALPFPAFSLSRCFSTVLDNLKYASSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           VTDHAQ HLGDVVFAELPDGGV VTAGKAFASVESVKATSDVNSPISGEI+EVNTKLSET
Sbjct: 61  VTDHAQHHLGDVVFAELPDGGVGVTAGKAFASVESVKATSDVNSPISGEIVEVNTKLSET 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYEDGWMIKVKPSNPAELESLMGPK+YTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKEYTKFCEEEDAH 164
[Close]
BLAST of Spo23413.1 vs. NCBI nr
Match: gi|3334201|sp|P93255.1|GCSH_MESCR (RecName: Full=Glycine cleavage system H protein, mitochondrial; Flags: Precursor)

HSP 1 Score: 281.6 bits (719), Expect = 9.000e-73
Identity = 141/164 (85.98%), Postives = 152/164 (92.68%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASS AN LG+SCA K+   PA SLSRCFSTVLDGLKYASSHEWVKH GSVATIG
Sbjct: 1   MALRMWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLGDVVFAELP+GG AV+AGK FASVESVKATSDVNSPISGEI+EVNTKLS++
Sbjct: 61  ITDHAQGHLGDVVFAELPEGG-AVSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDS 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYE+GWM+KVKPSNPAELESLMG K+YTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDAH 163
[Close]
BLAST of Spo23413.1 vs. NCBI nr
Match: gi|720061791|ref|XP_010275285.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Nelumbo nucifera])

HSP 1 Score: 275.4 bits (703), Expect = 6.400e-71
Identity = 135/163 (82.82%), Postives = 150/163 (92.02%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L +SC +KA   PAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALRISCTAKASLSPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF ELP+ G +V+ G +F +VESVKATSDVNSPISGEI+EVN+KLSET
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGGSFGAVESVKATSDVNSPISGEIVEVNSKLSET 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIKVKPS+P+ELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKVKPSSPSELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. NCBI nr
Match: gi|225427234|ref|XP_002280707.1| (PREDICTED: glycine cleavage system H protein, mitochondrial [Vitis vinifera])

HSP 1 Score: 274.2 bits (700), Expect = 1.400e-70
Identity = 133/163 (81.60%), Postives = 149/163 (91.41%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L +SCASKA   PAFSLSRCFS+VLDGLKYA+SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF E+P+ G +V+ G  F +VESVKATSDVNSPISGE++EVN+KLSE 
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIKVKPSNP+ELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTZ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141370 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.400e-87
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET
Sbjct: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 164
[Close]
BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CD32_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106360 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.000e-83
Identity = 156/164 (95.12%), Postives = 161/164 (98.17%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN+LG+SCASKALP+PAFSLSRCFSTVLD LKYASSHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANSLGISCASKALPFPAFSLSRCFSTVLDNLKYASSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           VTDHAQ HLGDVVFAELPDGGV VTAGKAFASVESVKATSDVNSPISGEI+EVNTKLSET
Sbjct: 61  VTDHAQHHLGDVVFAELPDGGVGVTAGKAFASVESVKATSDVNSPISGEIVEVNTKLSET 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYEDGWMIKVKPSNPAELESLMGPK+YTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKEYTKFCEEEDAH 164
[Close]
BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Match: D7TTY4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01120 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.000e-70
Identity = 133/163 (81.60%), Postives = 149/163 (91.41%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L +SCASKA   PAFSLSRCFS+VLDGLKYA+SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF E+P+ G +V+ G  F +VESVKATSDVNSPISGE++EVN+KLSE 
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIKVKPSNP+ELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Match: A5BA00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038357 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.700e-70
Identity = 132/163 (80.98%), Postives = 149/163 (91.41%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L +SCASKA   PAFSLSRCFS+VLDGLKYA+SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF ELP+ G +V+ G  F +VESVKATSD+NSPISGE++EVN+KLSE+
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGGSVSKGNGFGAVESVKATSDINSPISGEVVEVNSKLSES 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIKVKP NP+ELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKVKPGNPSELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Match: A0A061GAI7_THECC (Single hybrid motif superfamily protein OS=Theobroma cacao GN=TCM_015756 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.900e-70
Identity = 132/163 (80.98%), Postives = 150/163 (92.02%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L +SCASKA   PAFSLSRCFSTVLDGLKYA+SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALKISCASKAHLSPAFSLSRCFSTVLDGLKYANSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF +LP+ G +V+ GK F +VESVKATSDVNSPISGE++EVN+KL+E 
Sbjct: 61  ITDHAQDHLGEVVFVDLPEPGGSVSQGKGFGAVESVKATSDVNSPISGEVVEVNSKLTEA 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGW+IKVKPS+P+ELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWIIKVKPSSPSELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.600e-75
Identity = 141/164 (85.98%), Postives = 152/164 (92.68%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASS AN LG+SCA K+   PA SLSRCFSTVLDGLKYASSHEWVKH GSVATIG
Sbjct: 1   MALRMWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLGDVVFAELP+GG AV+AGK FASVESVKATSDVNSPISGEI+EVNTKLS++
Sbjct: 61  ITDHAQGHLGDVVFAELPEGG-AVSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDS 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDAH 165
           PGLLNSSPYE+GWM+KVKPSNPAELESLMG K+YTKFCEEEDAH
Sbjct: 121 PGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDAH 163
[Close]
BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.900e-67
Identity = 125/163 (76.69%), Postives = 142/163 (87.12%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L LS +S+    P FS+SRCFS VLDGLKYA SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +TDHAQ HLG+VVF ELP+ GV+VT GK F +VESVKATSDVNSPISGE++EVNT L+  
Sbjct: 61  ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIK+KP++P ELESL+G K+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Match: GCSH3_ARATH (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana GN=GDH3 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.500e-67
Identity = 126/164 (76.83%), Postives = 148/164 (90.24%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSC-ASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATI 60
           MALRMWASSTAN L LS  ASK+   PAFS+SRCFS+VL+GLKYA+SHEWVKHEGSVATI
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSE 120
           G+TDHAQ HLG+VVF ELP+   +V+  K+F +VESVKATS++ SPISGE++EVNTKL+E
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 TPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           +PGL+NSSPYEDGWMIKVKPS+PAELE+LMGPK+YTKFCEEEDA
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDA 164
[Close]
BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.600e-67
Identity = 129/164 (78.66%), Postives = 145/164 (88.41%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFS-LSRCFSTVLDGLKYASSHEWVKHEGSVATI 60
           MALRMWASSTAN L LS A++    P FS LSRCFS+VLDGLKYA+SHEWVKHEGSVATI
Sbjct: 1   MALRMWASSTANALRLSSATR----PHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATI 60

Query: 61  GVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSE 120
           G+TDHAQ HLG+VVF +LP+ G +VT    F +VESVKATSDVNSPISGEI+EVN+KLSE
Sbjct: 61  GITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSE 120

Query: 121 TPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           TPGL+NSSPYEDGWMIKVKPSNP+EL+SLMG K+YTKFCEEEDA
Sbjct: 121 TPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDA 160
[Close]
BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.600e-66
Identity = 127/164 (77.44%), Postives = 145/164 (88.41%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFS-LSRCFSTVLDGLKYASSHEWVKHEGSVATI 60
           MALR+WASSTAN L LS A++    P FS LSRCFS+VLDGLKYA+SHEWVKHEGSVATI
Sbjct: 1   MALRIWASSTANALRLSSATR----PHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATI 60

Query: 61  GVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSE 120
           G+TDHAQ HLG+VVF +LP+ G +VT    F +VESVKATSDVNSPISGEI+EVN+KLSE
Sbjct: 61  GITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSE 120

Query: 121 TPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           TPGL+NSSPYEDGWMIKVKPSNP+EL+SLMG K+YTKFCEEED+
Sbjct: 121 TPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDS 160
[Close]
BLAST of Spo23413.1 vs. TAIR (Arabidopsis)
Match: AT1G32470.1 (Single hybrid motif superfamily protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.400e-68
Identity = 126/164 (76.83%), Postives = 148/164 (90.24%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSC-ASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATI 60
           MALRMWASSTAN L LS  ASK+   PAFS+SRCFS+VL+GLKYA+SHEWVKHEGSVATI
Sbjct: 1   MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATI 60

Query: 61  GVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSE 120
           G+TDHAQ HLG+VVF ELP+   +V+  K+F +VESVKATS++ SPISGE++EVNTKL+E
Sbjct: 61  GITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTE 120

Query: 121 TPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           +PGL+NSSPYEDGWMIKVKPS+PAELE+LMGPK+YTKFCEEEDA
Sbjct: 121 SPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDA 164
[Close]
BLAST of Spo23413.1 vs. TAIR (Arabidopsis)
Match: AT2G35370.1 (glycine decarboxylase complex H)

HSP 1 Score: 247.7 bits (631), Expect = 5.100e-66
Identity = 122/163 (74.85%), Postives = 140/163 (85.89%), Query Frame = 1 

		  

Query: 1   MALRMWASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATIG 60
           MALRMWASSTAN L LS +        FS SRCFSTVL+GLKYA+SHEWVKHEGSVATIG
Sbjct: 1   MALRMWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIG 60

Query: 61  VTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSET 120
           +T HAQ HLG+VVF ELP+   +V+  K+F +VESVKATS++ SPISGEI+EVN KL+E+
Sbjct: 61  ITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTES 120

Query: 121 PGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           PGL+NSSPYEDGWMIKVKPS+PAELESLMGPK+YTKFCEEEDA
Sbjct: 121 PGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDA 163
[Close]
BLAST of Spo23413.1 vs. TAIR (Arabidopsis)
Match: AT2G35120.1 (Single hybrid motif superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 4.500e-46
Identity = 94/164 (57.32%), Postives = 119/164 (72.56%), Query Frame = 1 

		  

Query: 1   MALRM-WASSTANTLGLSCASKALPYPAFSLSRCFSTVLDGLKYASSHEWVKHEGSVATI 60
           MA R+ WAS  A+ L +S A +             S VL  LKYA SHEWVK +G+ AT 
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFS----------SVVLKDLKYADSHEWVKIDGNKATF 60

Query: 61  GVTDHAQTHLGDVVFAELPDGGVAVTAGKAFASVESVKATSDVNSPISGEILEVNTKLSE 120
           G+TDHAQ HLGDVV+ ELPD G +V+ GK+F +VESVKATSD+NSP+SG+++EVN +L+E
Sbjct: 61  GITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTE 120

Query: 121 TPGLLNSSPYEDGWMIKVKPSNPAELESLMGPKDYTKFCEEEDA 164
           +PGL+NSSPYE GW+IKV+ S+  E E LM    Y+KFCEEEDA
Sbjct: 121 SPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDA 154
The following BLAST results are available for this feature:
BLAST of Spo23413.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902186682|gb|KNA10762.1|4.9e-87100.hypothetical protein SOVF_1413... [more]
gi|731332569|ref|XP_010677275.1|4.3e-8395.1PREDICTED: glycine cleavage sy... [more]
gi|3334201|sp|P93255.1|GCSH_MESCR9.0e-7385.9RecName: Full=Glycine cleavage... [more]
gi|720061791|ref|XP_010275285.1|6.4e-7182.8PREDICTED: glycine cleavage sy... [more]
gi|225427234|ref|XP_002280707.1|1.4e-7081.6PREDICTED: glycine cleavage sy... [more]
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BLAST of Spo23413.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QTZ7_SPIOL3.4e-87100.Uncharacterized protein OS=Spi... [more]
A0A0J8CD32_BETVU3.0e-8395.1Uncharacterized protein OS=Bet... [more]
D7TTY4_VITVI1.0e-7081.6Putative uncharacterized prote... [more]
A5BA00_VITVI1.7e-7080.9Putative uncharacterized prote... [more]
A0A061GAI7_THECC2.9e-7080.9Single hybrid motif superfamil... [more]
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BLAST of Spo23413.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GCSH_MESCR5.6e-7585.9Glycine cleavage system H prot... [more]
GCSH_PEA1.9e-6776.6Glycine cleavage system H prot... [more]
GCSH3_ARATH2.5e-6776.8Glycine cleavage system H prot... [more]
GCSH_FLAAN5.6e-6778.6Glycine cleavage system H prot... [more]
GCSH_FLAPR3.6e-6677.4Glycine cleavage system H prot... [more]
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BLAST of Spo23413.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G32470.11.4e-6876.8Single hybrid motif superfamil... [more]
AT2G35370.15.1e-6674.8glycine decarboxylase complex ... [more]
AT2G35120.14.5e-4657.3Single hybrid motif superfamil... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000089Biotin/lipoyl attachmentPROFILEPS50968BIOTINYL_LIPOYLcoord: 56..138
score: 25
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 38..159
score: 27
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 1..164
score: 7.8
IPR002930Glycine cleavage system H-proteinPFAMPF01597GCV_Hcoord: 41..160
score: 6.3
IPR0030162-oxo acid dehydrogenase, lipoyl-binding sitePROSITEPS00189LIPOYLcoord: 81..110
scor
IPR011053Single hybrid motifunknownSSF51230Single hybrid motifcoord: 37..160
score: 1.05
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMsTIGR00527TIGR00527coord: 39..162
score: 1.5
NoneNo IPR availableGENE3D2.40.50.100coord: 40..161
score: 1.4
NoneNo IPR availablePANTHERPTHR11715:SF1GLYCINE CLEAVAGE SYSTEM H PROTEIN 3, MITOCHONDRIALcoord: 1..164
score: 7.8
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score:

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion