Spo23352.1 (mRNA)

Overview
NameSpo23352.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L35
Locationchr6 : 44840966 .. 44845921 (+)
Sequence length1012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTGTAAGTTTTGCTTTCATTGTTTTGTTGGGTTTAATTTGTGATTTAGATTGCTAATTCTAGGGAAGTTTATGAGTTTTTGATGTGGTTTTCTGAATGACAATGATTGGGGTTTTGGTGATTTAGGTTTAGGATTTTTTTCTGGGATGATTGGTTGTGAATGTGTAGAAATCGTATGAAATTTGATGTGTGTTGTATGTACATTTTTTAAGGTCCTTATGATTGATTTGTGTAAATGAATGTTGAACTTTTATATGGGGCTTTCTGGGTATTTATTATGTTTTCTTATTGATTGATGAGAATTTGATTTGTGTTTAATCAAGTATTTCATGTTATGTGGAGTATAGTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTAGGTTAACCTTGTCCTGTGTTCTTTCTTGATTCCTTCCATTAGTGGGTGATGTGTTCTAGGTTATTGAAATGATTGGGTGTTCATGATTTGTCTTGATTAGGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGGTATGGGTGGTTTATTTTTCATTTTAGAGTAGAGGCACCAGTGTTACCTAATTCTCTAGTTACCTGCGAACCGCGAATTATAACATGAAAATGGTACAATTTTGGTCTAATTAGCAAATTACGTAGCGAATTAAGAATCCATACCCAATCTTATACTAGTGAATCAGGTAACATTGAGTAGAGCACTCGAGCTCGAGCTCGAGCTGCTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCCATTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCAATTTATCTTGGTGATGCAGTGTTTGGAGGTTGGTTTATGACTTCTTAAAGCTCAAAGACGATTCTAGATATTGCTAGCAGGCCTAGCACATAATGGAAATGCATACCGTAGGTTTCTTTCTTTCTATATAGCTGCTTTTTAGGGAGTTGTGGTGCTCTACTACTGTGTAGCCAAGCCTTTTTGCCAAGGGTTTAGGCTTTTCGTTTGAACTTGATATTTTGTGCGGATGGACAAAAAGTAGGGTTAGCCACAATGTGATGTACCCAAGAAAAACAAAGTTAGTGATACATTATGAAATAGTTAGCGTAAATATTAGCATAATCTTTTCATATTTAGCAAATGTATATTAGGCGTGATATTTTCCCCTTGTATAGCTAATTAGGTCCTATAATCTAGCCAGTTAGACAATACTCTTGTATATATTTACATTGATACATCAATACAAATTAGGACCTAAATATATACAAGAGAATTGTCTAACTGACAGCATAATTACAAGCTAGATTATAGGACCTAATTAGCTATACATGGGAAAGATATACCGCCTAATATACATTTGCTAAATATGAAAAGATTGTGCTAATATTTACGTTGACTATTTCATAGTCTATCAGTTAGGGGTTGGCGGAACAATCTTAGTGGTCATTTGGTTGATTGCTGAAGGTTGATCTTCCCAGGAAATTTATTTTCTAGCAATTGTAAACAACTTTTTGGTTAATTGCAGAAAGTAATACCTCCCATAGGAAGTTCATCTTACCTAGGGGGACTTGGTAAGCCACTTCTTCCAATTTTTGGGAAGTAGAACTTTCCAGGAATTGTGGTTTTGTCAACCAAACTACCCTCGACTTTCCACAACCTCTACTTTCTAAAAATGCATATATGTTGCAAAGGTGTGAATAATAGAGGGAGGAACGAAAAAAGTGAGAGATATGAAAAGGTGATTTTTTGTTAAAGCTCTGTCAATGCACTTACTGAAAGCAATGGACCACAATTATTTTATAAATTTGGTGAACGATTCATTAACCTTTAGGGTTAGCAATCCTCGTAAGAGAGGTAGAAAAGTGTTATAAATGCAATAGTTTGATTGCATCACTCTACACTATCGCATTTATGAACCTTCTCTGTTTCTCTCATGTGGGTTCTCAATGGTAAGGACCAAACAACATTTCCCAACTTTTCCCAAGCTTATTTTTATTGGATTCAAAGCATTTGGAAATTAAAGAAGAACTTTACGGTATAGCTTCTCTGAAGCTACCAGTTCGTTGTAAGTTGTAACTTCTTCCAATTAGGTAGCAAGACTTAGGGTATTTTTTTTTCTCAGTTCCTATTCCTTAAACCAAACAGCACGATTGCTGATTCCTCAACTCTCTATGTTATTCCCGTCTTTTTTATTCCAATCATCTAAAATACCAGGTAAGTTAGTTTTTTTTTCCCATTCTAATTCTAGTAGGTTCCCAACTCTTTATGCTTATATAGCATACAGCTAAATGGTGATTGTTTGCAATGTTGTTGACTTTTTGTGCTGTACCCCTTATCTTAGAGGTTCTAGAGTTTTGCTCAAAGGAAGAAGGTAACCTTGTTTGGTAATATTGTACGTCTGCTTTCACTAGATGTCACTAGCTAGGCACGGAGCCTATTTATGGTAAAGAGTAATATGAATTTCTAACCAGATACCCTCTTTTTCGGGGAAAACCGTAATGTGTATAGTTTACTAGTTTAATCTATAGGTGGAAAAATGTGTAGGTGAAGTTTCATGCCTTGTAACATCTAAAATTATACTGTTTATGTAAGATTCATGACGTTTTTCATCTTTGAATGCCTTTTTCGTTTGTCAATATTCATGATATGCCTTAATCTTTTACATTCCCAGTTCTGAACTCTCCCTTTTGTCCTTTTGCTCTTGATCTTTCTTCTCCTAAACTGGTATTTTGATTGACTGGACTACGGAAGCACATCTATGTGCCTTCTGTTACTCTTTAGGTTTTGTAAACTTCAGATTTGAGACACCATTTCTGCTGAATTTAGGCCTGGGGTCTGGGTGTTATGTTGCTCGTTCTTGTTTGTCTGTGCCATATATAACTACTACCTCCATTTCATAAAAAAAAATTACGGTTGCTATTTGCACAAATATTAAGACAAAAATGAGAAAGTTAGTTGAATATAATAAAAATATGGATAAAGTAAGAGAAATGTTTAAAAAGGTGGGTGGGTGTAAGAAAAAATGAATAAAGTAAGAGAAATCGAGTAGATTGTACTCCGTAAATATTATGGAGTAAGAATGGTAAGGTAGTAAATTTCCATGTCCATAAATAGAATAAAGCAAAGTATAAAGAACCTTATGAAACAAACTAAAACGGAAATTGTAAAAATCATTTTGAAACGGAGGTAGTATATAAGAGACCATGTCATGTTCTGTAAAAAAATCCCTTCTTATATGAATATTTGACCACACTTTTCTTACTATGTTTTCACTCTTCAAGTCTTCACCACATGTAATCACATCAACCATTTTTCTCATACAAGTTCAAGAAGTCCTCTTAGTGATTATTCTCTTTCTCGTTTGCAATTTAAGAAGTTGTTAATCCCTGTGCTCAAAACTAACAAGAAGATTATTTAGGATGAATAGACCAAGTACAAACATGCTCATCTAAAATGACACTACAAAAATTTGTATATTTTATGACAACCTAATAACGACGGGTAAAAATCCCGTCGTAAAAGGGCTTTTGCGACGGGGATAACAACCCAACAAAGACGGGAACAACCGTCGCAAATGTCTTTTACGACGGGTTAATGACGGGATTTTCCATTATCGACGGCCCCCTTTTATGACGGGTTCGCGGCGGAAAAATCCCGTCGTTAATCAACAATTATTGGCCTTTAGCGACGGGATTTCCCGTCGTTAATAGTACAATTCTTGTAGTGTGTTTTGGTATTTTTTATATCCTTTTCTGTCATTCACTGTTACCAATTCTGTGCTGAGTTGTTGCATGCCATTCTTAATAGTTATATGATTTGAACGATTAACAAAAACTTAAACGATTATGTTGCTTAATGCAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

mRNA sequence

CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

Coding sequence (CDS)

ATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGA

Protein sequence

MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23352Spo23352gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23352.1Spo23352.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23352.1.exon.1Spo23352.1.exon.1exon
Spo23352.1.exon.2Spo23352.1.exon.2exon
Spo23352.1.exon.3Spo23352.1.exon.3exon
Spo23352.1.exon.4Spo23352.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23352.1.utr5p.1Spo23352.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23352.1.CDS.1Spo23352.1.CDS.1CDS
Spo23352.1.CDS.2Spo23352.1.CDS.2CDS
Spo23352.1.CDS.3Spo23352.1.CDS.3CDS
Spo23352.1.CDS.4Spo23352.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23352.1.utr3p.1Spo23352.1.utr3p.1three_prime_UTR


Homology
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|902237604|gb|KNA24854.1| (hypothetical protein SOVF_011680 [Spinacia oleracea])

HSP 1 Score: 344.4 bits (882), Expect = 1.200e-91
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|731332822|ref|XP_010677411.1| (PREDICTED: uncharacterized protein LOC104893055 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 258.8 bits (660), Expect = 6.800e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|729308399|ref|XP_010529237.1| (PREDICTED: uncharacterized protein LOC104806179 [Tarenaya hassleriana])

HSP 1 Score: 152.1 bits (383), Expect = 9.000e-34
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPF--SSISS 60
           MQR+CSKLR+ A          ++++ + S  + +R   HHS   +++    F  S  S 
Sbjct: 1   MQRFCSKLRSFA----------VQSNQNLSFITAHRRLLHHSPPQYRQQTLGFARSKWSF 60

Query: 61  QLNSHFNTPAS---LALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKV 120
              +H   P +     +    +  SLLP+ +AQ+R+ ++K ++ KWKK     TP TSKV
Sbjct: 61  VPAAHDGLPLANRVSPVAAGSMGSSLLPYHFAQVRNITSKERKAKWKKKWRPRTPVTSKV 120

Query: 121 KKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMK 177
           KKIKIKGYSS+K RFK LNDGTIRRWREGKRHNAHLKSKKSKRRLR+P +VPAAYAKVMK
Sbjct: 121 KKIKIKGYSSYKDRFKLLNDGTIRRWREGKRHNAHLKSKKSKRRLRQPALVPAAYAKVMK 175

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|18422571|ref|NP_568647.1| (ribosomal protein L35 [Arabidopsis thaliana])

HSP 1 Score: 144.1 bits (362), Expect = 2.400e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|727648225|ref|XP_010494672.1| (PREDICTED: uncharacterized protein LOC104771789 [Camelina sativa])

HSP 1 Score: 143.7 bits (361), Expect = 3.200e-31
Identity = 97/188 (51.60%), Postives = 118/188 (62.77%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTT---TTTTIRASSSSSSPSFYRFYYHHSTSNFQRP----FSPF 60
           MQR+C+KLR+++L         T+  R    S SPS  R   H +T  F       F P 
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFATSPHRLIHPSPSPSLCR---HLTTLGFANTTKWSFLPA 60

Query: 61  SSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATS 120
           + +S  LN      +S+  P         PH + Q+R+ ++K K  KWKK     TP TS
Sbjct: 61  AGVSPPLNV-----SSMGSP-------FAPHHFVQVRTITSKEKMAKWKKKWRPRTPITS 120

Query: 121 KVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKV 178
           KVKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKV
Sbjct: 121 KVKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKV 173

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Z6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011680 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.600e-92
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CH22_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107320 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.700e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: Q8LAA7_ARATH (Putative uncharacterized protein At5g45590 OS=Arabidopsis thaliana GN=At5g45590 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.700e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: U5GMV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01590g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.800e-31
Identity = 92/178 (51.69%), Postives = 114/178 (64.04%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+LA + ++            SSP FY     H   +F    S +S   S L
Sbjct: 1   MQRLCTKLRSLASVSSSHRLL-------HSSPQFY-----HRPLHFAAASSKWSLNGSIL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLP--HPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKG 120
           N+  + P  L       SF L P  HP  Q+R  S++ ++K  K +TP TSKVKK K+K 
Sbjct: 61  NTSSSLPIQLPSLPFLPSFRLSPLSHPLVQVRHVSSRERKKNRKPMTPLTSKVKKFKMKA 120

Query: 121 YSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFC 177
           YSS+K RF+T+NDGTIRRWREGK HNAHLKSKKS+RRLR+P  VPAAYAKVMKKL+FC
Sbjct: 121 YSSYKDRFRTMNDGTIRRWREGKNHNAHLKSKKSRRRLRQPSTVPAAYAKVMKKLSFC 166

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0D3D9A2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.900e-31
Identity = 94/183 (51.37%), Postives = 114/183 (62.30%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+++          +R++ + S         HHS +             SQL
Sbjct: 1   MQRLCTKLRSIS----------VRSNGNLSLIGAPHRLIHHSPT-------------SQL 60

Query: 61  NSHFNTPASL--ALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKVKKI 120
              F TP S    LP     F  +PH + Q+RS ++K K  KWKK     TP TSKVKK+
Sbjct: 61  TLGFATPPSKWSFLPAGASPF--VPHHFVQVRSITSKDKMAKWKKKWRPRTPITSKVKKV 120

Query: 121 KIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLN 178
           KIK YSS+K RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVMKKLN
Sbjct: 121 KIKFYSSYKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLN 158

BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Match: AT5G45590.1 (Ribosomal protein L35)

HSP 1 Score: 144.1 bits (362), Expect = 8.600e-35
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

The following BLAST results are available for this feature:
BLAST of Spo23352.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902237604|gb|KNA24854.1|1.2e-91100.hypothetical protein SOVF_0116... [more]
gi|731332822|ref|XP_010677411.1|6.8e-6678.7PREDICTED: uncharacterized pro... [more]
gi|729308399|ref|XP_010529237.1|9.0e-3451.8PREDICTED: uncharacterized pro... [more]
gi|18422571|ref|NP_568647.1|2.4e-3150.2ribosomal protein L35 [Arabido... [more]
gi|727648225|ref|XP_010494672.1|3.2e-3151.6PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S0Z6_SPIOL8.6e-92100.Uncharacterized protein OS=Spi... [more]
A0A0J8CH22_BETVU4.7e-6678.7Uncharacterized protein OS=Bet... [more]
Q8LAA7_ARATH1.7e-3150.2Putative uncharacterized prote... [more]
U5GMV7_POPTR3.8e-3151.6Uncharacterized protein OS=Pop... [more]
A0A0D3D9A2_BRAOL4.9e-3151.3Uncharacterized protein OS=Bra... [more]
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BLAST of Spo23352.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G45590.18.6e-3550.2Ribosomal protein L35[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 115..173
score: 2.0
NoneNo IPR availablePANTHERPTHR36400FAMILY NOT NAMEDcoord: 8..177
score: 6.6
NoneNo IPR availableunknownSSF143034L35p-likecoord: 114..173
score: 5.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome