Spo23352.1 (mRNA) | SpinachBase

Overview


Name	Spo23352.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L35
Location	chr6 : 44840966 .. 44845921 (+)
Sequence length	1012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTGTAAGTTTTGCTTTCATTGTTTTGTTGGGTTTAATTTGTGATTTAGATTGCTAATTCTAGGGAAGTTTATGAGTTTTTGATGTGGTTTTCTGAATGACAATGATTGGGGTTTTGGTGATTTAGGTTTAGGATTTTTTTCTGGGATGATTGGTTGTGAATGTGTAGAAATCGTATGAAATTTGATGTGTGTTGTATGTACATTTTTTAAGGTCCTTATGATTGATTTGTGTAAATGAATGTTGAACTTTTATATGGGGCTTTCTGGGTATTTATTATGTTTTCTTATTGATTGATGAGAATTTGATTTGTGTTTAATCAAGTATTTCATGTTATGTGGAGTATAGTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTAGGTTAACCTTGTCCTGTGTTCTTTCTTGATTCCTTCCATTAGTGGGTGATGTGTTCTAGGTTATTGAAATGATTGGGTGTTCATGATTTGTCTTGATTAGGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGGTATGGGTGGTTTATTTTTCATTTTAGAGTAGAGGCACCAGTGTTACCTAATTCTCTAGTTACCTGCGAACCGCGAATTATAACATGAAAATGGTACAATTTTGGTCTAATTAGCAAATTACGTAGCGAATTAAGAATCCATACCCAATCTTATACTAGTGAATCAGGTAACATTGAGTAGAGCACTCGAGCTCGAGCTCGAGCTGCTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCCATTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCAATTTATCTTGGTGATGCAGTGTTTGGAGGTTGGTTTATGACTTCTTAAAGCTCAAAGACGATTCTAGATATTGCTAGCAGGCCTAGCACATAATGGAAATGCATACCGTAGGTTTCTTTCTTTCTATATAGCTGCTTTTTAGGGAGTTGTGGTGCTCTACTACTGTGTAGCCAAGCCTTTTTGCCAAGGGTTTAGGCTTTTCGTTTGAACTTGATATTTTGTGCGGATGGACAAAAAGTAGGGTTAGCCACAATGTGATGTACCCAAGAAAAACAAAGTTAGTGATACATTATGAAATAGTTAGCGTAAATATTAGCATAATCTTTTCATATTTAGCAAATGTATATTAGGCGTGATATTTTCCCCTTGTATAGCTAATTAGGTCCTATAATCTAGCCAGTTAGACAATACTCTTGTATATATTTACATTGATACATCAATACAAATTAGGACCTAAATATATACAAGAGAATTGTCTAACTGACAGCATAATTACAAGCTAGATTATAGGACCTAATTAGCTATACATGGGAAAGATATACCGCCTAATATACATTTGCTAAATATGAAAAGATTGTGCTAATATTTACGTTGACTATTTCATAGTCTATCAGTTAGGGGTTGGCGGAACAATCTTAGTGGTCATTTGGTTGATTGCTGAAGGTTGATCTTCCCAGGAAATTTATTTTCTAGCAATTGTAAACAACTTTTTGGTTAATTGCAGAAAGTAATACCTCCCATAGGAAGTTCATCTTACCTAGGGGGACTTGGTAAGCCACTTCTTCCAATTTTTGGGAAGTAGAACTTTCCAGGAATTGTGGTTTTGTCAACCAAACTACCCTCGACTTTCCACAACCTCTACTTTCTAAAAATGCATATATGTTGCAAAGGTGTGAATAATAGAGGGAGGAACGAAAAAAGTGAGAGATATGAAAAGGTGATTTTTTGTTAAAGCTCTGTCAATGCACTTACTGAAAGCAATGGACCACAATTATTTTATAAATTTGGTGAACGATTCATTAACCTTTAGGGTTAGCAATCCTCGTAAGAGAGGTAGAAAAGTGTTATAAATGCAATAGTTTGATTGCATCACTCTACACTATCGCATTTATGAACCTTCTCTGTTTCTCTCATGTGGGTTCTCAATGGTAAGGACCAAACAACATTTCCCAACTTTTCCCAAGCTTATTTTTATTGGATTCAAAGCATTTGGAAATTAAAGAAGAACTTTACGGTATAGCTTCTCTGAAGCTACCAGTTCGTTGTAAGTTGTAACTTCTTCCAATTAGGTAGCAAGACTTAGGGTATTTTTTTTTCTCAGTTCCTATTCCTTAAACCAAACAGCACGATTGCTGATTCCTCAACTCTCTATGTTATTCCCGTCTTTTTTATTCCAATCATCTAAAATACCAGGTAAGTTAGTTTTTTTTTCCCATTCTAATTCTAGTAGGTTCCCAACTCTTTATGCTTATATAGCATACAGCTAAATGGTGATTGTTTGCAATGTTGTTGACTTTTTGTGCTGTACCCCTTATCTTAGAGGTTCTAGAGTTTTGCTCAAAGGAAGAAGGTAACCTTGTTTGGTAATATTGTACGTCTGCTTTCACTAGATGTCACTAGCTAGGCACGGAGCCTATTTATGGTAAAGAGTAATATGAATTTCTAACCAGATACCCTCTTTTTCGGGGAAAACCGTAATGTGTATAGTTTACTAGTTTAATCTATAGGTGGAAAAATGTGTAGGTGAAGTTTCATGCCTTGTAACATCTAAAATTATACTGTTTATGTAAGATTCATGACGTTTTTCATCTTTGAATGCCTTTTTCGTTTGTCAATATTCATGATATGCCTTAATCTTTTACATTCCCAGTTCTGAACTCTCCCTTTTGTCCTTTTGCTCTTGATCTTTCTTCTCCTAAACTGGTATTTTGATTGACTGGACTACGGAAGCACATCTATGTGCCTTCTGTTACTCTTTAGGTTTTGTAAACTTCAGATTTGAGACACCATTTCTGCTGAATTTAGGCCTGGGGTCTGGGTGTTATGTTGCTCGTTCTTGTTTGTCTGTGCCATATATAACTACTACCTCCATTTCATAAAAAAAAATTACGGTTGCTATTTGCACAAATATTAAGACAAAAATGAGAAAGTTAGTTGAATATAATAAAAATATGGATAAAGTAAGAGAAATGTTTAAAAAGGTGGGTGGGTGTAAGAAAAAATGAATAAAGTAAGAGAAATCGAGTAGATTGTACTCCGTAAATATTATGGAGTAAGAATGGTAAGGTAGTAAATTTCCATGTCCATAAATAGAATAAAGCAAAGTATAAAGAACCTTATGAAACAAACTAAAACGGAAATTGTAAAAATCATTTTGAAACGGAGGTAGTATATAAGAGACCATGTCATGTTCTGTAAAAAAATCCCTTCTTATATGAATATTTGACCACACTTTTCTTACTATGTTTTCACTCTTCAAGTCTTCACCACATGTAATCACATCAACCATTTTTCTCATACAAGTTCAAGAAGTCCTCTTAGTGATTATTCTCTTTCTCGTTTGCAATTTAAGAAGTTGTTAATCCCTGTGCTCAAAACTAACAAGAAGATTATTTAGGATGAATAGACCAAGTACAAACATGCTCATCTAAAATGACACTACAAAAATTTGTATATTTTATGACAACCTAATAACGACGGGTAAAAATCCCGTCGTAAAAGGGCTTTTGCGACGGGGATAACAACCCAACAAAGACGGGAACAACCGTCGCAAATGTCTTTTACGACGGGTTAATGACGGGATTTTCCATTATCGACGGCCCCCTTTTATGACGGGTTCGCGGCGGAAAAATCCCGTCGTTAATCAACAATTATTGGCCTTTAGCGACGGGATTTCCCGTCGTTAATAGTACAATTCTTGTAGTGTGTTTTGGTATTTTTTATATCCTTTTCTGTCATTCACTGTTACCAATTCTGTGCTGAGTTGTTGCATGCCATTCTTAATAGTTATATGATTTGAACGATTAACAAAAACTTAAACGATTATGTTGCTTAATGCAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

mRNA sequence

CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

Coding sequence (CDS)

ATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGA

Protein sequence

MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23352	Spo23352	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23352.1	Spo23352.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23352.1.exon.1	Spo23352.1.exon.1	exon
Spo23352.1.exon.2	Spo23352.1.exon.2	exon
Spo23352.1.exon.3	Spo23352.1.exon.3	exon
Spo23352.1.exon.4	Spo23352.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23352.1.utr5p.1	Spo23352.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23352.1.CDS.1	Spo23352.1.CDS.1	CDS
Spo23352.1.CDS.2	Spo23352.1.CDS.2	CDS
Spo23352.1.CDS.3	Spo23352.1.CDS.3	CDS
Spo23352.1.CDS.4	Spo23352.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23352.1.utr3p.1	Spo23352.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|902237604|gb|KNA24854.1| (hypothetical protein SOVF_011680 [Spinacia oleracea])

HSP 1 Score: 344.4 bits (882), Expect = 1.200e-91
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179

[Close]

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|731332822|ref|XP_010677411.1| (PREDICTED: uncharacterized protein LOC104893055 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 258.8 bits (660), Expect = 6.800e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170

[Close]

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|729308399|ref|XP_010529237.1| (PREDICTED: uncharacterized protein LOC104806179 [Tarenaya hassleriana])

HSP 1 Score: 152.1 bits (383), Expect = 9.000e-34
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPF--SSISS 60
           MQR+CSKLR+ A          ++++ + S  + +R   HHS   +++    F  S  S 
Sbjct: 1   MQRFCSKLRSFA----------VQSNQNLSFITAHRRLLHHSPPQYRQQTLGFARSKWSF 60

Query: 61  QLNSHFNTPAS---LALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKV 120
              +H   P +     +    +  SLLP+ +AQ+R+ ++K ++ KWKK     TP TSKV
Sbjct: 61  VPAAHDGLPLANRVSPVAAGSMGSSLLPYHFAQVRNITSKERKAKWKKKWRPRTPVTSKV 120

Query: 121 KKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMK 177
           KKIKIKGYSS+K RFK LNDGTIRRWREGKRHNAHLKSKKSKRRLR+P +VPAAYAKVMK
Sbjct: 121 KKIKIKGYSSYKDRFKLLNDGTIRRWREGKRHNAHLKSKKSKRRLRQPALVPAAYAKVMK 175

[Close]

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|18422571|ref|NP_568647.1| (ribosomal protein L35 [Arabidopsis thaliana])

HSP 1 Score: 144.1 bits (362), Expect = 2.400e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

[Close]

BLAST of Spo23352.1 vs. NCBI nr
Match: gi|727648225|ref|XP_010494672.1| (PREDICTED: uncharacterized protein LOC104771789 [Camelina sativa])

HSP 1 Score: 143.7 bits (361), Expect = 3.200e-31
Identity = 97/188 (51.60%), Postives = 118/188 (62.77%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTT---TTTTIRASSSSSSPSFYRFYYHHSTSNFQRP----FSPF 60
           MQR+C+KLR+++L         T+  R    S SPS  R   H +T  F       F P 
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFATSPHRLIHPSPSPSLCR---HLTTLGFANTTKWSFLPA 60

Query: 61  SSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATS 120
           + +S  LN      +S+  P         PH + Q+R+ ++K K  KWKK     TP TS
Sbjct: 61  AGVSPPLNV-----SSMGSP-------FAPHHFVQVRTITSKEKMAKWKKKWRPRTPITS 120

Query: 121 KVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKV 178
           KVKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKV
Sbjct: 121 KVKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKV 173

[Close]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Z6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011680 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.600e-92
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179

[Close]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CH22_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107320 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.700e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170

[Close]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: Q8LAA7_ARATH (Putative uncharacterized protein At5g45590 OS=Arabidopsis thaliana GN=At5g45590 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.700e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

[Close]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: U5GMV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01590g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.800e-31
Identity = 92/178 (51.69%), Postives = 114/178 (64.04%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+LA + ++            SSP FY     H   +F    S +S   S L
Sbjct: 1   MQRLCTKLRSLASVSSSHRLL-------HSSPQFY-----HRPLHFAAASSKWSLNGSIL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLP--HPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKG 120
           N+  + P  L       SF L P  HP  Q+R  S++ ++K  K +TP TSKVKK K+K 
Sbjct: 61  NTSSSLPIQLPSLPFLPSFRLSPLSHPLVQVRHVSSRERKKNRKPMTPLTSKVKKFKMKA 120

Query: 121 YSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFC 177
           YSS+K RF+T+NDGTIRRWREGK HNAHLKSKKS+RRLR+P  VPAAYAKVMKKL+FC
Sbjct: 121 YSSYKDRFRTMNDGTIRRWREGKNHNAHLKSKKSRRRLRQPSTVPAAYAKVMKKLSFC 166

[Close]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0D3D9A2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.900e-31
Identity = 94/183 (51.37%), Postives = 114/183 (62.30%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+++          +R++ + S         HHS +             SQL
Sbjct: 1   MQRLCTKLRSIS----------VRSNGNLSLIGAPHRLIHHSPT-------------SQL 60

Query: 61  NSHFNTPASL--ALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKVKKI 120
              F TP S    LP     F  +PH + Q+RS ++K K  KWKK     TP TSKVKK+
Sbjct: 61  TLGFATPPSKWSFLPAGASPF--VPHHFVQVRSITSKDKMAKWKKKWRPRTPITSKVKKV 120

Query: 121 KIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLN 178
           KIK YSS+K RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVMKKLN
Sbjct: 121 KIKFYSSYKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLN 158

[Close]

BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Match: AT5G45590.1 (Ribosomal protein L35)

HSP 1 Score: 144.1 bits (362), Expect = 8.600e-35
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1


		  
Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173

The following BLAST results are available for this feature:

BLAST of Spo23352.1 vs. NCBI nr
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
BLAST of Spo23352.1 vs. ExPASy Swiss-Prot
BLAST of Spo23352.1 vs. TAIR (Arabidopsis)

BLAST of Spo23352.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237604\|gb\|KNA24854.1\|	1.2e-91	100.	hypothetical protein SOVF_0116...	[more]
gi\|731332822\|ref\|XP_010677411.1\|	6.8e-66	78.7	PREDICTED: uncharacterized pro...	[more]
gi\|729308399\|ref\|XP_010529237.1\|	9.0e-34	51.8	PREDICTED: uncharacterized pro...	[more]
gi\|18422571\|ref\|NP_568647.1\|	2.4e-31	50.2	ribosomal protein L35 [Arabido...	[more]
gi\|727648225\|ref\|XP_010494672.1\|	3.2e-31	51.6	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S0Z6_SPIOL	8.6e-92	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CH22_BETVU	4.7e-66	78.7	Uncharacterized protein OS=Bet...	[more]
Q8LAA7_ARATH	1.7e-31	50.2	Putative uncharacterized prote...	[more]
U5GMV7_POPTR	3.8e-31	51.6	Uncharacterized protein OS=Pop...	[more]
A0A0D3D9A2_BRAOL	4.9e-31	51.3	Uncharacterized protein OS=Bra...	[more]

BLAST of Spo23352.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G45590.1	8.6e-35	50.2	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 115..173 score: 2.0
None	No IPR available	PANTHER	PTHR36400	FAMILY NOT NAMED	coord: 8..177 score: 6.6
None	No IPR available	unknown	SSF143034	L35p-like	coord: 114..173 score: 5.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome