Spo23314.1 (mRNA)

Overview
NameSpo23314.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 43522505 .. 43525541 (-)
Sequence length751
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGGTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGAAAATGAAGCGAATTCTTGGAAATCAGAATTTATTTTGAGTGAATAATTAGTTAATTGTTCTATAGCGACGAGTTAATTTGGAAGTGTTTAGAAACACGTGATATATTATTATTATTTTTAGGCGCTATTGAAGTTTGATCATGTTTCTCTGTCTTTTGGGATCCACATGCTGACCTAATTTTTGGGTGTGGTTAAAATTGAAGTGATGTTGTTTTCTCATGTTTGAGTGGGGGCATATGTATTTTGTTTGTTTGTTTCCTTGTAAGTTCTTGATGAGTTGAGTAAGTTTAGGGGATCCTTTCTTCAAAAAAGTTACCAATAATTGATTGGGTTCACTCCAAATTGAGCTGTGGATTAATAGTATCAGGTTAGTAGAAATAAGGTATTGAGATTTGAGACAATAGAATTGGATGTTTAACAGCCAATTTACTCCCATTTTTCATTGATTTGTTTTCAGATTAGAAGCGGTAGACCTTGAATGCTCCCGTCCCTTTCCCAATTGTATTTCCAGTGAATTCGTTTATGTTTTCTTGATTGGATGACTTGGTTTCTTGTTGAATTCAATTTTGATGAAGAAGAAAAATATTTACCACTGCAAAAATTTGGGTGTACAGTTTACTAGTTTACTTATTGATTGTCTGGGTTTAGTAATTAGTAGTGGAGGAAATCGAGGAATGATGAATCAGCTTTTACGAATGTTAAATGAATAAATGATATTTGCAATGAATTTTGGTCTAATGTTAGTAAAGAAGTTAAATAAGATAGCTGCAAACTCGTAATTTTTACTAAAATTTCTCTTTAGAGTAGATAATGTTGTCAACTACCATTAGTATGTGCTACTTCCTTTGATGAGTGTGAGTTTTGTCTCTATATATTGTTTGTGCTATTTTGTCTTTGCCCTTTATTAGTTACAGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGTTATTTGGTGACTATATATGCATGTGTATATATGTTTCAAAAGAACACATAAAAGGCGTATTCAACCATTTGTATTGATTGCTTGAGTTTGTAATGTCAGCTTGTGCGGGTTCTTGAACATTCGTGTATTTTGCAGGTCTATTCTAGTGTTTGTGAAGACAACTAATTGATTTATCATTAACAGGTACTTGAAATTAAGGTCTTTTACTTAGATAATATCTATGCTTGGCAATAATGGTATGAGTGTCGGTCTTAACCTTGGGATTTTACTTTTGTTTGTATTATTTGTGGTGATTTTAAGTTGGCAGAAACAACTTTAAACTGTTGCAGTGTGAGTTTGTGCAGCTACTTTGATTATTGAATTGGTTTTTCTTTTTTTCCCCCAAGGAGTTCATTCAAACATAAAATTTGGTCTTGATTTATTTTATTTATAATAAAAACATGGTTATCTCTGGCTGTTTTCTTGTTTAGTTACATTATAATTTTGTGGGTATTATGATTTTGGTGTTTGAGCTTGCTTGGCATGAATGATCCATTTTGATTGTCTTAATTGGAACAAAATCAGTCTCAGATACATCTTAATTATACATTCAAGCTTGAAAGATACTCTTTTCTGGTTCTCGATTATTGAAGAACAATGAACTTTCTGACCAACTTATATTATACAATTTCAAACACATGTGAGAGATACTTAGTGATGTATATGCATACACTCTAAGGTTCTCTTGTCGATCTCAGTTAAGTGATTGATCTATTAACCTTTAAGTTTTGATTTAGCCCTGATCTTGTACTTACTTTTTACCTGTAAAACAAAAACCTCATTTTGTGATCCTTTGTCAGTCGTTGAACAAGTTTTTTGCAAAGTGTGTATCAGTTATGTTACCTATGATTCTTTGGATTCCCTATAGTTTGAACTTTGAAATCAGTTTCTTGCTACTTTGATGTGATCAAAACTCAGTCATCATCCGTGTTACTTCCATTATTTCCGTTATGTACTTCATGAAATGTATGTAGAGATTCTTAGATCATAGATGCTGATGCAATAATAACGTGTAGAAAATCTTCAGTCTGTATGAAATTTCTCGCCTGAGAAATGGTTTGTCTTCCTCCCTATAACCTAATGAACTCTTTTCATGGATATTTCTGCTTTTGTGCGTTGGATCTCTTAAACATTTGATTAATCATCTTGTCTAATACTATTTCTCTGTTTTGTTTAGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

mRNA sequence

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

Coding sequence (CDS)

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGA

Protein sequence

MISNSRVYVIDLLWEWAQCMGLLTNVFVVPEYDLRWLRVGRKINRLCMAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMKSADKDEELRSELISISYLPSPDKVSLPANGHL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23314Spo23314gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23314.1Spo23314.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23314.1.CDS.3Spo23314.1.CDS.3CDS
Spo23314.1.CDS.2Spo23314.1.CDS.2CDS
Spo23314.1.CDS.1Spo23314.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23314.1.utr3p.1Spo23314.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23314.1.exon.3Spo23314.1.exon.3exon
Spo23314.1.exon.2Spo23314.1.exon.2exon
Spo23314.1.exon.1Spo23314.1.exon.1exon


Homology
[Close]
BLAST of Spo23314.1 vs. NCBI nr
Match: gi|902227339|gb|KNA20649.1| (hypothetical protein SOVF_050460 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 8.500e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92
[Close]
BLAST of Spo23314.1 vs. NCBI nr
Match: gi|870860339|gb|KMT11692.1| (hypothetical protein BVRB_5g106290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.6 bits (244), Expect = 9.100e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1 

		  

Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80
[Close]
BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP36_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050460 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.900e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92
[Close]
BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106290 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.400e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1 

		  

Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80
The following BLAST results are available for this feature:
BLAST of Spo23314.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902227339|gb|KNA20649.1|8.5e-40100.hypothetical protein SOVF_0504... [more]
gi|870860339|gb|KMT11692.1|9.1e-1865.9hypothetical protein BVRB_5g10... [more]
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BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RP36_SPIOL5.9e-40100.Uncharacterized protein OS=Spi... [more]
A0A0J8CDP5_BETVU6.4e-1865.9Uncharacterized protein OS=Bet... [more]
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BLAST of Spo23314.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23314.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35282FAMILY NOT NAMEDcoord: 39..135
score: 1.3
NoneNo IPR availablePANTHERPTHR35282:SF2F5D14.24 PROTEINcoord: 39..135
score: 1.3