Spo23223.1 (mRNA)

Overview
NameSpo23223.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 45045637 .. 45050758 (-)
Sequence length414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCTAGCACTATCATCTGTGTGATGACAAACGCGACTACTTTCGTTGATGCTAATCCCATCAGCAAAAGAAACACCACAAAGATTATTACACTGACAATTGCTGAAGCTATCTTGTGAAGCTGTTTCACTGCTGATTTAGTGTCGTTTAGAGAATGTGCTAGAGCCTTTCTTTCGAAATAAGTCCTTACCTTCAATCACCGTAAGTCGGTAAATGGAAGTTTAATTTCTTTGTCATGAAATAGGGATACAATATAATCTTTCACATAAAGAAGGTATAGCATAAAACTTACCACCCAATTTCTAAAAGAGGATCTGGTGATTCTTCCGGTCTCTAATGCTCCTTCGAAAAGAGGGAATATTTCATGAATTTCGTTCCTCTTCAAGAACCTTGATAGATCCTCCTCCTCAATATACCTTCCAAAATATTACCAGTCAAGGTTATCAAAATCGCGATTGTATATATCCTGAATTCTTAAAACATACTCCCTCCGTCTCTTTTTGTTTTTTACATTTTCCTTTTTGGTATTTCAANTGACAAAGACAAACATTATACAGTCGAAAATGATTTTGCAACTGTTGTTAAAGATGACTCCTAGGACTATCATCTGTGTGATGACAAACGCGACTACTTTCGTTGATGCTAATCCCATCAGCAAAAGAAACACCACAAAGATTATTACACTGACAATTGCTGAAGCTATCTTGTGAAGTTGTTTCACTGCTGATTTAGTGTCGTTTAGAGAATGTGCTAGAGCCTTTCTTTCGAAATAAGTCCTTACCTTCAATCACGTAAGTTGGTAAGTGGAACTTTGTCATGAAATATGGATACAATATAATCTTTCACATAAAGAAGATATAGCATAAAACTTACCACCCAATTTCTAAAAGAGGATCGGGTGATTCTTCCGGTCTCTAATGCTCCTTCGAAAAGAGGGAATATTTCATGAATTTCATTCCTCTTCAAAAACCTTGATAGATCCTCCTCCTCAATATACCTTCCAAAATATTACCAGTCAAGGTTATCAAAATCGCGATTGTATATATCCCGAATTCTTAAAACATACTCCCTCCGTCTCTTTTTGTTTTTTACATTTTTCTTTTTGGGTATTTCAAAATGTGCTTTACATTTTCTTTTATATTATCACATAAATACCCTAATAATTCTATCAAAATCTGTGTTCAATAATTATTTTAACCAGTTAAATTCATTGAGTCATTTAATCTCTTACACTTTTCCATTGGGACATTAAATGTTTCTCATATTTCCAATATCAGAATTTTGATAAAAGTGAAAACATTATAAATAAACATAATTTGTCTTGTTTAAATAAAAAAATAAAAGAATCTCAACACACATTAATTAATCGTTAAAACGCGTGAAATATATCAAACGTAAAGAAAAAAATAAAAGACCGAGGGAGTAAATGATATTGACTTACTTGGCACCACATTTTGCAACGTTTTTGAAGATGCGTTTGGCAGTACTTCTAGCTTGCCACTCACTTGTAATCTCAGCTTCAGCTGTTCCAAATTCATAAACATTCTTCGAAAGTGGGGACAAACCAGAAGATCTAATGTGCTTCATCAACCTCTTCAAACTCCAAATTGAACCCGGAGTTTCCATATTTAGCTCATTGAGCTTCTCCATGCTTAAACTCTTTGCTCCATATTTCTTTGATCTAATTGCGTTCTTAGCATGTTTCCATTTTGTAGGCAAAGATTTTGCTCCTATGATTGGTTTATGCTCTTCATGGACTAGTTCACTAAAGGGCGGACCTAGAATCATAGATGGGAATCACAAATCAGAATTTACAACATAGAAGTGAATATTGAAACGTGTTTTAGACATGATTAGTACTCATAACATTTTAGTACAATTTGTCTATTACTAACTCACCAGTAGGGGTGTGTTAAAATTGGTTCGACTGAAAAAATGGACCGGATCGGACCGACGCTGATTAGACTGGATCAGACCGGTCTCTGGGTCGAGAAATATCATTTTACGGTTTTTGGTCCTGTCCTGTCCAAAACCCGGTTATGGACCTACTGATTTTTTTTTAATAAAGTGGAGTATAATATACAAAAATCTAATTCTCTCCTTTATTATATTGTACCATATTGTGATATATTTTATTTTAGCTTGCAAAAAAAGGCCTTCAACAATTAGTTCCTTTATATATATATATAATTTTTCTTTTTTACCATAAGATTTTTTTAAAATAAAAAAATATATAGAAATATGTTTTTAACATATCGGAACCGTTCCGGTCCGTGTTTTGGACCGACTTTTTCCGATGAGGTTTGGGTCCGGTCTGAGATTTGGACCGATTTTTCCAATCCAGTCCAAGTATAATCTGTCCGGTCTCCGGATCTTGAATTATCAAAATTCCAATCTTCAATCCGGTCTGGGTTTAGACCGATGAACACCCCTATTCACAAGTGACAAGAAAATTCCAATTCAGTGAACCAAACGACCCCTTAAAAAGTCCTTCATTTGTGCATAGTTTTGGCCAACGAACTGTGAAGGCCCATTTTGAAAACAACTCAAACCTAAAAGCCCAAGCACACAATATTCCCGGTTCATATTTCCAACAGCCCAGAACTTTAGAGTCTCCAATCACGTTTCAAAAACGTTACTTCGTACCCCCTGATATGAGTCACCCCCTATAAAAACGTTACTTCGTAGTCGTACTCCCGCCATATATTCACCACTCACACGCAGAGGAAGAGCAGCGACGAAGAAGACATCGGCAGCTGATTTCCTAACACCGCCACCAGAAGCAAAGACGGTGAACACTCGCAAGAATTCTACCGTGTCATCGCCGAAATCCTTCGAATTCACGCTCAATTCTCCGTCCTCAAATGCTGCAAATCGCCGGAAATCACCGATGGAATCTTCGCCGCTGCGCAAAAAGAGGTGTCGTCTTCAATAACTGAGCTGAAAGACGCAGTGTCGTCTCATTTGGACTCGATTAAGCGGCAGGTTGAGCGATCTCACTCTGACATTCTCAAGGAGGTCGATTCTAAGCGCTTGAAGGTCTATCTCTCTCTCTCCTCTCTGGTTCTTTTTCTAGACGTTTCCGTTGATATTTTGTTGAATTTTGAATTAAAATGATTTTTTAATTTCAACGAAATTCTAGAATTGTGTGATTTGTTTAAGTAATTCGGTTACTTCGTCTCGGAAATAATGTCTAGGTTTTCGCTGATATTTTGCTGAATTTTCAATGGTAAGAGATGTTGATTGCAATGAATATCTGTGTTTCTGAAAGCGAATAGCCGATTAGGTTAGTAATGTATGAATTTTGTGTGAATTCGTTATGAATAATTGAGGATGGACCTAGATGTGAAATAATTAGTAGTATTAGAAAAGTCTTTGATGCAAATTCAAACTATCAGTTGCTGATTTCTATGAGATGCCGGAATTCTGTGATTTGTGCGACCAAGCAATTAAGTTGATAGCTGATAGTTCTACCTGCATTTGTTGTTAGACTTGTTACTAGTGTTTGAAGTTTGTGTTACCAGGGAAGTTGTTAAGCTTTTGAACTAGTAGGGCTTATTTAAGTTTTGGATGGACACATTTTATGCCTATTGATCTGGATTAAATTCTAGGTTTTATTTGAAGGCTCTTGAAAGAAAAATGCCAAATCCATGCTTATCTCCTTGTAGATGCAAAGTCCTAATTGGTGAGAGCATGGAAATTAGTTTTTTCTCGGACAGTAAAATGCTATGTTGATTCAGTTTGAAATTATTGAATTCTGCACTTACAGCTTATAGTTAGCTTGCATGATAAATAGTTTTCTCGGACAGTAAAATGCTATGTTGATTCAGTTTGGCATGATTGAATTCTGCACTTACAGCTTATAGTTAGCTTGCATGAGAATTAGTTTTCTCGGACAGTAAAGTGCTATGTTAAATTGTTAATTCAATTTGAAATGATTGAATTCTGCACTTTCAGCTTATAGTTAACTTGCTATAGGTTTGCAATTAACAGCTTAGCATCAGTTAAGATTTCGTTATAGTTAACTCAGACAAGTAATATGATTATTTATCTTTTCTAGCCAGGACTTAATTTTTCAAGAAACATATATGCTTTTATATGTGTGTGCAGACTGCACTAAATGCAATTTTTCTCACATCTCCGACTCAAACGTGGTTTCTCAATCACATTATTCCTTATTTCCTTGTAGCTTAATAGTTATACAATAAAATTTCACTCATGTTAGCTAATGGTCTTATGCACCATAATAGAACATGATATGTGACAGAGGTTCTTCATAGATTTTATTTTTATATTTTAAGATTATAAACAAAGACTTTGATCTGTTGTCACAAAATCCATATCTCAGTGCAAAAGTGTGCTGCCAAACAGAAGGTTGGCATGGAGTTAGACTAAATATACTGCATCTAGAATCAAAGAGCATGAACTATTTGAGACCTTGAGGATTTATAAGCTTATTTCAAAATATTGTGTTGTTTATTGTTTCAACAGATTCAGGCTCAAGCATGTCAGAACCTAATGGATGGGACAGACAAGGAAGTTAAGAAGATGTCTGAAAGGGTAGCTGAAAGCTGTGAAGCAATGAAGGTATTACATTATTGTTTTATGCAGCAATTGTTGCTAATTTTTTTAAAGATGTTTGTTGGACTGAAGTTACCTGAATAATGTTTACCAACAGGTTTTTTATTCCGAGTTCATGGTGGATGCACAAACCATTGCTGCTCGAGGTATGTTACTGGCTTCTTATATGCTTTAGAAAAACTTGTCAACTTTGCTAATTGTGATTCCCACTTGTGCTTGTTTGGCTATTTGCTGATGACTTGATGAGTGTCTTAGTGTCTAGTTGTCTACTGTGTCTAGGTTCGTTAGTCGTTACATCAACAAATTCACATCTATTACTTTACAACAGACCTATCAAAAGGCGGGATGGGATATAAAAATTAGCCAATAGTGCTGGCCCGGGTCAAACTTTGAGCTAATTTTGAGTGCCTATAACTAGAGTTGTTCAGACTTTGGTTTAAATCGGACCAAACCGTATTTTCACGGTTTGGTTTGGTTTTTTTTTTTTTCTTTTTCTTCCAGCTAAATACGGGTTGGATTTGGTTTGAAAAAAAATAA

mRNA sequence

ATGACTCCTAGCACTATCATCTGTGTGATGACAAACGCGACTACTTTCGTTGATGCTAATCCCATCAGCAAAAGAAACACCACAAAGATTATTACACTGACAATTGCTGAAGCTATCTTAAGCAAAGACGGTGAACACTCGCAAGAATTCTACCGTGTCATCGCCGAAATCCTTCGAATTCACGCTCAATTCTCCGTCCTCAAATGCTGCAAATCGCCGGAAATCACCGATGGAATCTTCGCCGCTGCGCAAAAAGAGGTGTCGTCTTCAATAACTGAGCTGAAAGACGCAGTGTCGTCTCATTTGGACTCGATTAAGCGGCAGGTTGAGCGATCTCACTCTGACATTCTCAAGGAGGTCGATTCTAAGCGCTTGAAGCTAAATACGGGTTGGATTTGGTTTGAAAAAAAATAA

Coding sequence (CDS)

ATGACTCCTAGCACTATCATCTGTGTGATGACAAACGCGACTACTTTCGTTGATGCTAATCCCATCAGCAAAAGAAACACCACAAAGATTATTACACTGACAATTGCTGAAGCTATCTTAAGCAAAGACGGTGAACACTCGCAAGAATTCTACCGTGTCATCGCCGAAATCCTTCGAATTCACGCTCAATTCTCCGTCCTCAAATGCTGCAAATCGCCGGAAATCACCGATGGAATCTTCGCCGCTGCGCAAAAAGAGGTGTCGTCTTCAATAACTGAGCTGAAAGACGCAGTGTCGTCTCATTTGGACTCGATTAAGCGGCAGGTTGAGCGATCTCACTCTGACATTCTCAAGGAGGTCGATTCTAAGCGCTTGAAGCTAAATACGGGTTGGATTTGGTTTGAAAAAAAATAA

Protein sequence

MTPSTIICVMTNATTFVDANPISKRNTTKIITLTIAEAILSKDGEHSQEFYRVIAEILRIHAQFSVLKCCKSPEITDGIFAAAQKEVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLNTGWIWFEKK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23223Spo23223gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23223.1Spo23223.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23223.1.CDS.3Spo23223.1.CDS.3CDS
Spo23223.1.CDS.2Spo23223.1.CDS.2CDS
Spo23223.1.CDS.1Spo23223.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23223.1.exon.3Spo23223.1.exon.3exon
Spo23223.1.exon.2Spo23223.1.exon.2exon
Spo23223.1.exon.1Spo23223.1.exon.1exon


Homology
[Close]
BLAST of Spo23223.1 vs. NCBI nr
Match: gi|902212506|gb|KNA17001.1| (hypothetical protein SOVF_083990 [Spinacia oleracea])

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-8
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 

		  

Query: 86  EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           EVSSSITELKDAVSSHLDSIKRQVERSHSDILKE +S   +L+
Sbjct: 116 EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEAESSNSRLH 158
[Close]
BLAST of Spo23223.1 vs. NCBI nr
Match: gi|902204446|gb|KNA14871.1| (hypothetical protein SOVF_103420 [Spinacia oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-8
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 

		  

Query: 86  EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           EVSSSITELK+A+SSH+DSIKRQVERSHSDILKEVDS   +L+
Sbjct: 69  EVSSSITELKEALSSHIDSIKRQVERSHSDILKEVDSSNSRLH 111
[Close]
BLAST of Spo23223.1 vs. NCBI nr
Match: gi|731332895|ref|XP_010677450.1| (PREDICTED: uncharacterized protein LOC104893079 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.9 bits (154), Expect = 2.500e-7
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 

		  

Query: 71  KSPEITDGIFAAAQKEVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           KSP  T  +    + EVSSSI+ELK+ VSS+LDSIKRQVERSHSDILKEV+S   +L+
Sbjct: 58  KSPSNTSPL---RKPEVSSSISELKETVSSNLDSIKRQVERSHSDILKEVESSNSRLH 112
[Close]
BLAST of Spo23223.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083990 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.100e-9
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 

		  

Query: 86  EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           EVSSSITELKDAVSSHLDSIKRQVERSHSDILKE +S   +L+
Sbjct: 116 EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEAESSNSRLH 158
[Close]
BLAST of Spo23223.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5T6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_103420 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-8
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 

		  

Query: 86  EVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           EVSSSITELK+A+SSH+DSIKRQVERSHSDILKEVDS   +L+
Sbjct: 69  EVSSSITELKEALSSHIDSIKRQVERSHSDILKEVDSSNSRLH 111
[Close]
BLAST of Spo23223.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CH60_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107630 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.700e-7
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 

		  

Query: 71  KSPEITDGIFAAAQKEVSSSITELKDAVSSHLDSIKRQVERSHSDILKEVDSKRLKLN 129
           KSP  T  +    + EVSSSI+ELK+ VSS+LDSIKRQVERSHSDILKEV+S   +L+
Sbjct: 58  KSPSNTSPL---RKPEVSSSISELKETVSSNLDSIKRQVERSHSDILKEVESSNSRLH 112
The following BLAST results are available for this feature:
BLAST of Spo23223.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902212506|gb|KNA17001.1|1.3e-883.7hypothetical protein SOVF_0839... [more]
gi|902204446|gb|KNA14871.1|1.7e-881.4hypothetical protein SOVF_1034... [more]
gi|731332895|ref|XP_010677450.1|2.5e-763.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23223.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RBY3_SPIOL9.1e-983.7Uncharacterized protein OS=Spi... [more]
A0A0K9R5T6_SPIOL1.2e-881.4Uncharacterized protein OS=Spi... [more]
A0A0J8CH60_BETVU1.7e-763.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo23223.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23223.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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