Spo22616.1 (mRNA)

Overview
NameSpo22616.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01126 : 181868 .. 184467 (+)
Sequence length630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGGTAATTGTATTTATTTATTTTACTTCAATGTTAGATTTTTTTCCTTCAATTTTTCTACGGATCGGGACCCTTTAAGATGAATTTGAGTCCCTTTGTTTTGTTCCTGGTGAATTATAGATCTGGTGTTGTGTTTATGAGTTTCTTCTTTTTTTGTTCTGTTTCAAAAAAATTGGTTTTCTCTCTTCAACTTGTCGAGTATTTCGGGAATTAGGGTTATTGATTTTGTTTCTATTATTTTGGTTTGATTCATGATGATGAGGGACCCTGAACAATCCGCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGTTTGTTGGGTTTTTAATATTTAATTTTTTTGCCATTTTTTCAGCTAATAGCTATTGATAATGCTCATTTTTTTCTTATGAATTTTACTTTGCACTTAAATTAATTAAATGATCCTGGAATTGCAATTGTTGCATAAAATGGTGGGTGTTTGGGGGCAATGTGAATCTTCTTATGTCTTGCTCTATTGATGTGTAAGCGTATGAGTCGGTTTTTGGTTTTTAATACATTATGTTGGATCGTAATGATTGAACCAAAGGGTTCTGATGTTTCTGGACTATAGAATCGGGCAACTTTGATAGTCGGGAGATTCATTCAATTGAAGTCACAGACAATGAAAACATTGTAGTTTATTGTTTTTACTGTTGCCAAGCAGGGTCAGGGGTTAGTAACTCTAGGTTGTTGAATTTTCTCCGTTGTATTCATACATTTCATTGTGAGAAGAGAAACAAACAAAATCAATGTGTAGGAGCACAAAAATTTTAGTCTGCACAGTCTTTATTTATCACTAGTAAACTTTAACTTCGAAATTCAACTACTTTATGATATTGAGCTGCAAATTCATCTATAATGTAATGGCTAGGTTAGTAAATTGGCACTGATTTCATATTGAATGAGGATGACATTGCAGAAATGTGTCTGTTGGTGCCCTGTTTGTGTTTATTTTAGTAGCTAATTTTAGGCCTTATTATCATCAACTATCTAGCACTACTACAAAATGCGTCATTTGAGTTTTTTAATTGATTGTTTTTTACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTCTTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGTTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATGACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTTATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

mRNA sequence

AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Coding sequence (CDS)

ATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Protein sequence

MRFLCVDLIHSRFYYEVTPDITDAPKDQVQDQGTDVVGEVVEVGSSATKFKAGDKVLTLLSHD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo22616Spo22616gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo22616.1Spo22616.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22616.1.exon.1Spo22616.1.exon.1exon
Spo22616.1.exon.2Spo22616.1.exon.2exon
Spo22616.1.exon.3Spo22616.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22616.1.utr5p.1Spo22616.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22616.1.CDS.1Spo22616.1.CDS.1CDS
Spo22616.1.CDS.2Spo22616.1.CDS.2CDS
Spo22616.1.CDS.3Spo22616.1.CDS.3CDS


Homology
[Close]
BLAST of Spo22616.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 58.5 bits (140), Expect = 4.700e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29
[Close]
BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.300e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29
The following BLAST results are available for this feature:
BLAST of Spo22616.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902052257|gb|KNA02862.1|4.7e-6100.hypothetical protein SOVF_2146... [more]
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BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q6X5_SPIOL3.3e-6100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo22616.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22616.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011032GroES-likeGENE3D3.90.180.10coord: 30..60
score: 8.
IPR011032GroES-likeunknownSSF50129GroES-likecoord: 32..62
score: 5.

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity