Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATCAACTCTTTTCCAGAAATCCGAAAAAAGAAAATAAAAAATGGATACAACACTAATTTATTCATCTCCAATAACAATTAAACTTCGTCCATTACTCGCCACCTCAATCCGATATTCCTCCTCCACGGTAAGCATGTCCAAATCACCGGAAACCGGAGACGATCGGCGGCGAAAAGTAGTAGTATGTGGCGGTGGAGTCATCGGAGTTTGCACGGCATACTTTCTTGCCAAAAGCGGCGCTGCTGTCACCGTCGTGGAACAGTCATCCGTCGCATGCGCAGCTTCCGGAAAAGCCGGTGGATTTCTGGCCCTAGATTGGTGTGACGGTGGGCCCGTTTCTTCCCTCGCCCGTGCCAGCTTCAATCTACACCGTTCATTGTCCGATGAGCTTGATGGGCATTCATCCTACGGTTACCGTCCTCTCACAACCCTGAGTGTCTCAATCGATGAGTCTGAAATTGGGCCTAGTGGACGGGTTAAAAACCTGCCGTCGTGGGTTAATGGGCCGGCCCAAAAATCCAACTCCATTGGGACAGTCCAAACGACGGCCCAAGTTCACCCGCAGTTGTTTACGAGGTGTTTGATGACGACTGCGGTGGAGAAGTATGGTGCGGAGGTGGTGATTGGGAGGTTAGAGAGAGTGGGGTTTGAAAATGAGCGAGTTGACTCGGTAGTTTTGGATGGTGGACGAGTTATTAATGCTGACTCGGTTGTGTTAGCTCTTGGGCCGTGGTCTTCTAAATTGGCCTTGCTTTCGTCGTTGTTTAGGGTTTATGGATTGAAGGCCCATAGCATTGTTTTGCAGCCCAAAGAGCCTGATGCTATCTCGCCTCACGCATTGTTTTTAACTTATCACCCAGCCCAGGGGGGGAAGCCCATGGATCCCGAAGTCTATCCTAGGCCCACTGGTATAACTTCTTTCATCTGTTTTTTTTTTCTTTTCCCTTATTTACCCGTGATATGGTTATATCGTTTTAACTTACACTTTTGCTAATGAATACTAATTATATGTTAGTGATTTTACACAAAAAGTTGATATATTTAAAATATACATTGTGACAAACTCAATAACATTTTACATAATAAGATTTGATTATACGGAATATATTTTAGTAGAAAATTATGGTCAAAGTAAGATAAATGAATAGTGCCAAAAATGGATATGGTGCAACTATTTAAAAAGGGAGTACTACCGTACTACTACTCCGAATTACTTTTTTAAGATTGCCAACGTAAATGTTTGAGTATTTATAAAAAGACCGAGTCATAAGATTCACGTTATTATATTTTTTGTTTACGTATAAATCTCAAACAATGTTCAAATTAGAGCGGATCACAAATCATTTTGGGACTAAGGCTTTGTTATTATTGTTGTATAAATCTCAAACAATGTTCAAATTAGAGCTTAAAAATAGTGACAGAAATGTAATACGAGTATCTTTATGGCAAAGAGCGACGGATTACAATGTTTGGAGTAATAGACATTACCTTTGATTGAATAGATTTTAAAGTTACATGGTTTGTGCAATAGTGTAGCAATGGCTTAGAGGTCTAATTTATATTGAAATGATGCGTTTATCCAGCTTTTAATTGGATCAAGTTAAATTATAGAGTTTTTTTGGTCACATAATGCCATGCCAATGCCATAGTCCGTTTATGAGTGTAGCCAAAGATTCATCTATTCTTTTGTCTTTGGGATGTAATGGACTAAATCAAAATGGTTCTTAAATTCACTACCTTTCCATGAAGTAGAAAAATAACAGGGGTAAGGTTGCGTACATCCGACCCGCCTTACCTCGCTTGTTGCGGGACTGCGGTAGCCTTTTTTGAGACAATGGGATAATGGTAATGATGATAATGCCATGCCATGTTAGGATGTGGGGGTGTTATGGTTCAAGTACATGCTAATTAAGAACTTCCATCAACAAGAGTTTTTGAATAATTTTCGGTCTTTTTAATTTGTTCATCTTTGCTCATCAAAGATAGTGAAAAATTATCACACATTGCAGACTAGCTACATAAGATAGTAGAATTCCTTTTAACTAATCATATCTTTGTCGCGCGCTACATGTTCGATCGTACGTAGGAGAGGTGTACGTATGTGGAATGTCATCAACAGAAGAGGTACCAGACGATCCAGATCAGGTTACACCGAATCCAGAATCAATAAGAATGCTCAAACAGGTGGCTGGGAATGTTTCCACACACTTGAAGGAAGGGGAAGCACAAGTAAAGGCAGAGCAAGCATGTTTCTTGCCATCCACAGATGATGGTATTCCGGTTATTGGTGAACTTCGGGGTATGAAAGGTTGCTTTGTAGCAACCGGGCATAGTTGTTGGGGTATCCTTAACGGGCCAGCAACCGGGGCTTCTTTGGCCGAGCTTGTTATGGATGGTCGAGCTAGGCTCGTTGATCTTAGCCCGTTCAGCCCGTCGAGGTTTATTGCTATCTAGCTAGTAGAAGGCGTTGAAGTTATGTTGAAGGTTTTTTTGCCATTTTTATGTTGTATATTATTCTCTCCTGAAAATTAAGTTTAATAGGATTGGGTTGATATATGTTTGTAACTCTCTTAGAATGAATGAAGTAGAACATATCACTATAAAGGAGTAAATGAATAAATCATGGGGTAAACGTCTAATAAGACTGATGATGTCATCGTTAAAAAAAACATAACTATACATTGACTATTTGATTTTATTAGTGTGTGCAAGTTTTCGTATAAATGACTACTGAGTTTTGTTTTGAAATAAAACAGTGGTGATAAATGATACTCCCTCCATCCCTTAATACTCGCACCGGTTTGATCGGTGCGGAGTTTAAGATATTTGAATTGACTTATTAATTTAATGGGTGTTAGTTGATAGTGGGGTATTTTTTTTTAATATAGTTAGTGAGAAATGTGTAAGGGGTGGAGAGTGGTGAGTGTGAGGTGTGAATTTTTAAATGATTTTTTGTAGGGAGTAG GATCAACTCTTTTCCAGAAATCCGAAAAAAGAAAATAAAAAATGGATACAACACTAATTTATTCATCTCCAATAACAATTAAACTTCGTCCATTACTCGCCACCTCAATCCGATATTCCTCCTCCACGGTAAGCATGTCCAAATCACCGGAAACCGGAGACGATCGGCGGCGAAAAGTAGTAGTATGTGGCGGTGGAGTCATCGGAGTTTGCACGGCATACTTTCTTGCCAAAAGCGGCGCTGCTGTCACCGTCGTGGAACAGTCATCCGTCGCATGCGCAGCTTCCGGAAAAGCCGGTGGATTTCTGGCCCTAGATTGGTGTGACGGTGGGCCCGTTTCTTCCCTCGCCCGTGCCAGCTTCAATCTACACCGTTCATTGTCCGATGAGCTTGATGGGCATTCATCCTACGGTTACCGTCCTCTCACAACCCTGAGTGTCTCAATCGATGAGTCTGAAATTGGGCCTAGTGGACGGGTTAAAAACCTGCCGTCGTGGGTTAATGGGCCGGCCCAAAAATCCAACTCCATTGGGACAGTCCAAACGACGGCCCAAGTTCACCCGCAGTTGTTTACGAGGTGTTTGATGACGACTGCGGTGGAGAAGTATGGTGCGGAGGTGGTGATTGGGAGGTTAGAGAGAGTGGGGTTTGAAAATGAGCGAGTTGACTCGGTAGTTTTGGATGGTGGACGAGTTATTAATGCTGACTCGGTTGTGTTAGCTCTTGGGCCGTGGTCTTCTAAATTGGCCTTGCTTTCGTCGTTGTTTAGGGTTTATGGATTGAAGGCCCATAGCATTGTTTTGCAGCCCAAAGAGCCTGATGCTATCTCGCCTCACGCATTGTTTTTAACTTATCACCCAGCCCAGGGGGGGAAGCCCATGGATCCCGAAGTCTATCCTAGGCCCACTGGAGAGGTGTACGTATGTGGAATGTCATCAACAGAAGAGGTACCAGACGATCCAGATCAGGTTACACCGAATCCAGAATCAATAAGAATGCTCAAACAGGTGGCTGGGAATGTTTCCACACACTTGAAGGAAGGGGAAGCACAAGTAAAGGCAGAGCAAGCATGTTTCTTGCCATCCACAGATGATGGTATTCCGGTTATTGGTGAACTTCGGGGTATGAAAGGTTGCTTTGTAGCAACCGGGCATAGTTGTTGGGGTATCCTTAACGGGCCAGCAACCGGGGCTTCTTTGGCCGAGCTTGTTATGGATGGTCGAGCTAGGCTCGTTGATCTTAGCCCGTTCAGCCCGTCGAGGTTTATTGCTATCTAGCTAGTAGAAGGCGTTGAAGTTATGTTGAAGGTTTTTTTGCCATTTTTATGTTGTATATTATTCTCTCCTGAAAATTAAGTTTAATAGGATTGGGTTGATATATGTTTGTAACTCTCTTAGAATGAATGAAGTAGAACATATCACTATAAAGGAGTAAATGAATAAATCATGGGGTAAACGTCTAATAAGACTGATGATGTCATCGTTAAAAAAAACATAACTATACATTGACTATTTGATTTTATTAGTGTGTGCAAGTTTTCGTATAAATGACTACTGAGTTTTGTTTTGAAATAAAACAGTGGTGATAAATGATACTCCCTCCATCCCTTAATACTCGCACCGGTTTGATCGGTGCGGAGTTTAAGATATTTGAATTGACTTATTAATTTAATGGGTGTTAGTTGATAGTGGGGTATTTTTTTTTAATATAGTTAGTGAGAAATGTGTAAGGGGTGGAGAGTGGTGAGTGTGAGGTGTGAATTTTTAAATGATTTTTTGTAGGGAGTAG ATGGATACAACACTAATTTATTCATCTCCAATAACAATTAAACTTCGTCCATTACTCGCCACCTCAATCCGATATTCCTCCTCCACGGTAAGCATGTCCAAATCACCGGAAACCGGAGACGATCGGCGGCGAAAAGTAGTAGTATGTGGCGGTGGAGTCATCGGAGTTTGCACGGCATACTTTCTTGCCAAAAGCGGCGCTGCTGTCACCGTCGTGGAACAGTCATCCGTCGCATGCGCAGCTTCCGGAAAAGCCGGTGGATTTCTGGCCCTAGATTGGTGTGACGGTGGGCCCGTTTCTTCCCTCGCCCGTGCCAGCTTCAATCTACACCGTTCATTGTCCGATGAGCTTGATGGGCATTCATCCTACGGTTACCGTCCTCTCACAACCCTGAGTGTCTCAATCGATGAGTCTGAAATTGGGCCTAGTGGACGGGTTAAAAACCTGCCGTCGTGGGTTAATGGGCCGGCCCAAAAATCCAACTCCATTGGGACAGTCCAAACGACGGCCCAAGTTCACCCGCAGTTGTTTACGAGGTGTTTGATGACGACTGCGGTGGAGAAGTATGGTGCGGAGGTGGTGATTGGGAGGTTAGAGAGAGTGGGGTTTGAAAATGAGCGAGTTGACTCGGTAGTTTTGGATGGTGGACGAGTTATTAATGCTGACTCGGTTGTGTTAGCTCTTGGGCCGTGGTCTTCTAAATTGGCCTTGCTTTCGTCGTTGTTTAGGGTTTATGGATTGAAGGCCCATAGCATTGTTTTGCAGCCCAAAGAGCCTGATGCTATCTCGCCTCACGCATTGTTTTTAACTTATCACCCAGCCCAGGGGGGGAAGCCCATGGATCCCGAAGTCTATCCTAGGCCCACTGGAGAGGTGTACGTATGTGGAATGTCATCAACAGAAGAGGTACCAGACGATCCAGATCAGGTTACACCGAATCCAGAATCAATAAGAATGCTCAAACAGGTGGCTGGGAATGTTTCCACACACTTGAAGGAAGGGGAAGCACAAGTAAAGGCAGAGCAAGCATGTTTCTTGCCATCCACAGATGATGGTATTCCGGTTATTGGTGAACTTCGGGGTATGAAAGGTTGCTTTGTAGCAACCGGGCATAGTTGTTGGGGTATCCTTAACGGGCCAGCAACCGGGGCTTCTTTGGCCGAGCTTGTTATGGATGGTCGAGCTAGGCTCGTTGATCTTAGCCCGTTCAGCCCGTCGAGGTTTATTGCTATCTAG MDTTLIYSSPITIKLRPLLATSIRYSSSTVSMSKSPETGDDRRRKVVVCGGGVIGVCTAYFLAKSGAAVTVVEQSSVACAASGKAGGFLALDWCDGGPVSSLARASFNLHRSLSDELDGHSSYGYRPLTTLSVSIDESEIGPSGRVKNLPSWVNGPAQKSNSIGTVQTTAQVHPQLFTRCLMTTAVEKYGAEVVIGRLERVGFENERVDSVVLDGGRVINADSVVLALGPWSSKLALLSSLFRVYGLKAHSIVLQPKEPDAISPHALFLTYHPAQGGKPMDPEVYPRPTGEVYVCGMSSTEEVPDDPDQVTPNPESIRMLKQVAGNVSTHLKEGEAQVKAEQACFLPSTDDGIPVIGELRGMKGCFVATGHSCWGILNGPATGASLAELVMDGRARLVDLSPFSPSRFIAI Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo22488.1 vs. NCBI nr
Match: gi|902155634|gb|KNA05926.1| (hypothetical protein SOVF_185810 [Spinacia oleracea]) HSP 1 Score: 760.8 bits (1963), Expect = 1.300e-216 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 1
BLAST of Spo22488.1 vs. NCBI nr
Match: gi|731336976|ref|XP_010679544.1| (PREDICTED: putative oxidoreductase TDA3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 646.7 bits (1667), Expect = 2.700e-182 Identity = 336/427 (78.69%), Postives = 368/427 (86.18%), Query Frame = 1
BLAST of Spo22488.1 vs. NCBI nr
Match: gi|645220119|ref|XP_008238786.1| (PREDICTED: putative oxidoreductase TDA3 [Prunus mume]) HSP 1 Score: 572.4 bits (1474), Expect = 6.400e-160 Identity = 282/409 (68.95%), Postives = 347/409 (84.84%), Query Frame = 1
BLAST of Spo22488.1 vs. NCBI nr
Match: gi|566169785|ref|XP_002306237.2| (FAD-dependent oxidoreductase family protein [Populus trichocarpa]) HSP 1 Score: 571.2 bits (1471), Expect = 1.400e-159 Identity = 279/405 (68.89%), Postives = 343/405 (84.69%), Query Frame = 1
BLAST of Spo22488.1 vs. NCBI nr
Match: gi|743865945|ref|XP_011032321.1| (PREDICTED: putative oxidoreductase TDA3 [Populus euphratica]) HSP 1 Score: 570.5 bits (1469), Expect = 2.400e-159 Identity = 276/405 (68.15%), Postives = 344/405 (84.94%), Query Frame = 1
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH65_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_185810 PE=4 SV=1) HSP 1 Score: 760.8 bits (1963), Expect = 8.800e-217 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 1
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F274_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127470 PE=4 SV=1) HSP 1 Score: 646.7 bits (1667), Expect = 1.900e-182 Identity = 336/427 (78.69%), Postives = 368/427 (86.18%), Query Frame = 1
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Match: B9H462_POPTR (FAD-dependent oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0005s06180g PE=4 SV=2) HSP 1 Score: 571.2 bits (1471), Expect = 9.900e-160 Identity = 279/405 (68.89%), Postives = 343/405 (84.69%), Query Frame = 1
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Match: M5VYC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006298mg PE=4 SV=1) HSP 1 Score: 567.4 bits (1461), Expect = 1.400e-158 Identity = 281/409 (68.70%), Postives = 342/409 (83.62%), Query Frame = 1
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Match: A0A078EWG4_BRANA (BnaC05g44810D protein OS=Brassica napus GN=BnaC05g44810D PE=4 SV=1) HSP 1 Score: 564.7 bits (1454), Expect = 9.300e-158 Identity = 278/383 (72.58%), Postives = 327/383 (85.38%), Query Frame = 1
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Match: YAM3_SCHPO (Putative oxidoreductase C1F5.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.03c PE=3 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.200e-41 Identity = 122/387 (31.52%), Postives = 186/387 (48.06%), Query Frame = 1
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Match: TDA3_YEAST (Putative oxidoreductase TDA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA3 PE=1 SV=2) HSP 1 Score: 117.9 bits (294), Expect = 2.700e-25 Identity = 90/286 (31.47%), Postives = 140/286 (48.95%), Query Frame = 1
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Match: YE66_SCHPO (Putative oxidoreductase C6G10.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6G10.06 PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 6.000e-17 Identity = 91/389 (23.39%), Postives = 165/389 (42.42%), Query Frame = 1
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Match: YURR_BACSU (Uncharacterized oxidoreductase YurR OS=Bacillus subtilis (strain 168) GN=yurR PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 7.900e-17 Identity = 105/392 (26.79%), Postives = 171/392 (43.62%), Query Frame = 1
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Match: THIOG_NOSS1 (Bifunctional protein ThiO/ThiG OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thiO/thiG PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.300e-8 Identity = 105/384 (27.34%), Postives = 165/384 (42.97%), Query Frame = 1
BLAST of Spo22488.1 vs. TAIR (Arabidopsis)
Match: AT5G67290.1 (FAD-dependent oxidoreductase family protein) HSP 1 Score: 553.1 bits (1424), Expect = 1.400e-157 Identity = 274/383 (71.54%), Postives = 324/383 (84.60%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22488.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22488.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22488.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22488.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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