Spo22004.1 (mRNA) | SpinachBase

Overview


Name	Spo22004.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Auxin-responsive protein
Location	SpoScf_03284 : 17331 .. 24147 (+)
Sequence length	822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAACAATATGAACAACAACAATAATATTATTGAGGTTCAAAGGCAAGAATCCTTAAAAAGAAGATGGCATGATAGTTTCTACACTAGACTTCTTACTTCACCCGCCCCTACTAACCCTACTACATCTGCGGCCGCGGCAACGCCCGCATTAATCATAGGTAAACCACCTCACCACCACCACCACCACCATCATCACTTTCTCCAACCAGGGAGGTTGTTGGATGGTGGCGGCGGTGGAGATCTAGTCCTTAATGTAATTCCCTCGGTCACGGTTGTGCTTGAGGGTCGTTCGATCTGTCACCGTATAAACCTCCAAAACCATGGTAGTTACCAAAGCCTAGCTAAAGCTCTTAGACAAATGTTTGTGGAAATTGCAAATATTCAACAAAATGAGGATGAAAGTGATGGGCAATTTGATTTGTCGAATGCTGTTCCTGGTTATGTTATTGCTTATGAAGATATGGAGAATGATCTTCTTCTTGCTGGTGATCTTCAGTGGAAGTACGTTTTTTTTCCTCTTTATTTTTTCCATATTCGCGAAATTTATTTATATATTTATTTAATGATGTTCGTTTATTCATTTATTCATTGTTAGGAAGATATTTTGAAATTTTAGGGGTGCCTTTTATATGATTTGAATTAGAGAAAATTAGGATGAAAAATATTACTACAAGTAGTAATATATACTTGTGATACTGTAGTGATTCATGGATTTTCTTTCTTTATTTATTTATTTATTTACGAACAATAATACAAGAATTTTCAATGTCGATAAACATTATTAATGAAGTTTATTAATCCGTATAATATTTAGAAAGGATTTAATGAAATAAATTAAGAAAGCAAAAATTGGAGTAGTGTTTTAATTTTTTCATACATGCAATAATTGTCTTGAAAATTATGATACCATTAAACTTATTTAAAGTACATTAGGTATACTTATGTACATACTGAGTATATCATTTACATTTACATGATATCACCAATAATATTAATCATAATATTTTCAAATAAAAATAAAATACTAATCATAAAATGCTTAAAGGGAAATAGAGAAAATACTTTGTACGAATATTAATTTTAATTATAAATTGTATTTGGTCAATCCTTTATTTTATTTTATTTAACTCGTCTTATTGAAATTAATTACTCCCTCCGTATTTTTTTAAGAGATACACTTGCCTTTTCCGGCCGTATTTTTTTAAGAGATACACTTGCCATTTTTGGTAACTTATCAACCCCACCACCTAATTAAATAATATATCTACTACACTTTATGACCCACCATCCAATTAAAAAATAATTTTACAACTACACCCACCCCACCCCCACCTCCACTTGTTCAAAAGGACATGGTCCCCAATGTACTTATTTATTAAAATATCTACCACAACCCCACTTCTTTTATTCTTCTTAAGACCCGTGCCCAACCAAGTGTATCTCTTAAAAAAATACGGAGGGAGTACTTATTTTCTGAAGTAAATGTAGATAAGATGAACAGAACAAACAATTATTGTATTTGGACATAAACTTTTGATAGGTGTTATTAATCACACTAGATATCGACATAACTATTAACTCCAATAAACACGTAAGAAGTACGTGGTAAAGCGAAATTAAAAAGGTGAGACTGGATCGAGCTGAGCCGAGCCGAAACGAGCATGTAGAAATTATGGAGGGATGGATATAGCACCTTAATATATAATAAGTGTTCTGGGACACTGATATTCTGGAAAATATGTTTAATGTGTTTGTGCACCAACATATATATTTAAGTAGTCTGTGGAAATGTCAATACATAATTTTAATTTGGTCCCAAAAGTTGTCCTCTGATCTGCTGTGAACTTTGCTTTAATTAATTTTAGAGCACCAAGAGTTAAATAGTTATTGTGCACTACTCCGTATGTTATAACATTAACACCCTTAATATTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATGTAGGTGATTTTATTACATGAAACTATCCAACTTCCCCCCTACCACTGCTGGATTATTATTTACTTGAGTTAGGTGATTGACACCATAATTAATCATCCATTTAAACCTACGGACCTCGAGAGGTATGTAGAGTCTTTACTACGAGTATCATTTAATTTTAGCATATAACCTGTCTTTTTGGCGATAATTACCTAGCCATCTTCAAACAGTGTTCAAGTCGCATAAGTAAAGTTTTAGCCTTTTAGGGTTGACGTATGAAAGATGACGTACATGTACTCCGACTTGAGTATGATTGACTATATTAAGTTCTTTAGGTTATGTATATGTTTATATAACCTGTCTTTTTGGCGGTATATATGGACGATCACCACCTTACCTACTTTAAAACAGTGTTCAATTCGCACAAGTAAAGTTCTTTAGGTTATGTATATGTATAACCTGTCATTTTGGGATATATATATATGAGCTTTTACCGCCTCACCTACTTTGAAACATAGTTCAAGTCTTAGAAGTAAAGTTTTAATAAAACTCTACAAAGTAGGGGATTTTGAAAAGATAATATATGAGCCGTTGATTTTCCATTCAATGGTTGATATTGCTCAAATTCTACCTTATAGAGTTATTTTAGTACTCTAGAGGATCCAAAACCATTAAGTTGACGAGTATTTTTAGGTTTAGAATGAAGGTTTTTTCAGAAAAAAAAAGTTTAAGAATGAAGGTTTACCTAGAAGATGCGTAATAAATTAGAGCACCCTTTCCATTTTGAGTTTAGGTAACCTTGATTAAGGGAGAAAATTGGACTATTGGCATGCGTGCCTCTTTTTTGAGGAAAAGAGAGGGAGAAATATTTAAATATCTGAGATCATGATCGACCTTATTACATGTGGGGAAACGATAAATCCAAGGAAGAATTTCACTTTTTCCAAGGAAATCAACTTAAAAAAATTTGGATTTCCTTGAAAGAAGTAAAATTTTCCTTGGATTTATCATTTCCCTTACTGACATGTGTTGTTGACTAAGAATAATCTTGTTACGTGTGGTGTTGACTAACAATGACTTCACAAGTAGATTAATTATTTTCTGCCATATAATTAATGTTAAGTATATTTTTAAGTCGGCTATTTATTTTTCATATAATTAATCGAATGGGATGGATCACATATAACTAATGGTTGATGTGATTATTGTGAATCATGCAATAGGAAAGGGGATTCACGAGAAAGGCATTACGTACACAAAAAACATATTTGGAAACTATAGGTTTCGTCCGCCTGGTATTATAAAGTATCAAATGTGAGAAGAAATAGATCTTGTTGTTGTTTATTTGATGCCAATGTATGTCAATAAGTCATCATGAAACTATATTAGTTATGACGTACCACTATACATACATGTTATTATGTTAACACAAACCAACATGCACGTTAGTGGGCAACTCATCTTATGGTTTAGATCAAGGGTTACAAGGTCGAGCCCCATTAACCATGTAATGCTTAATTGGGAGTGACTTAAACATAAATTTGCGTAACTGGTTTAGCTATCATAAGATAGATGATAGTTCAATAGGATCCTTCTTTTTATCTAATAATAAAAAATATATGTTATTCGTTCTTCATAAGAAGGATTGAGTTAATTAGCTAATTGATCCACAAGTGGATATTTTATAATACCATAAGTCCATCAACAATCAACAAGCATGATTTCTTTAGTTTGAAGGAAGTTTATTAGGATGATTCAATTCTTGCCCTAGAATAAAGCCTTTTACTTCTTCCAAGGATTCAAGGTACCAAGTAACCGGCCTACTATTACATTCCAAGAATGCGTGGTATTCGCTACTCTATCCGAATTTTTTTAGGATTTACCATTACTATATCTGGTCATTTTTTTTTTTTGGAAAATTTAACATTAATATCTCAACTTTCACTAATCTTCTCATTTTGGAATAATCTCAACTTTCGGGTAAATCTTCTTTAAATAATATAAACTATCCATTTGTCTATGTACAATAGACCCAAAATGATTTAGAAATGTCAGAAAAATAAGATTTCAGATTATTTTGAGAAGATAACCTCAAAAGTTTGGATTACTCAAAAATAATCCAAAGTTGAAAGTTGGGATTACACAAATTCTTATTTACATGAGGTGTACGATAAATATTGTATACCGAAGTTAAAGTTGACGTAAAATGCTTAAAAGTCACCATTATATAGGTAAAAGTTATCTACTTTTTAGTAATAAAAATTTTCATTTTAATAAAAAATATTTATTCAAAATCACTAATAATGTATAAAATTAATCATTTAACACTTTAAAATGTTTATCTATTAACTTTTTTTGTAATAGTATAAAAGTTAGAGAAAACTGAGTAAAAGTTAGAGAAAACTAGATTAAAGTTATGTTGGTGCACAATAAATTTATTGTACAACTTGTGCACGCAAGACCTTTTGTTGAGATTATTCATGTCAATTTTTCCTATTTTTTTAAGAGTTACAATTTCATTTTTGTTAAGTTTTACGCTTCACTACTCAATTGTTTATTATTTTTTAGTTTCTTATAGGCCCCTCTGAAATCATAAAGAATTTTATTTCTGGTTTTATGTTCTATTCCGTTTTCTTTGATTAATTTTTTTTTCTCACTTGCATTATTATCATATCAAATTTAACCAAGTTTCCTCAATATATACAAGTCAACTTGTAATTCCTAAAATATCCGGAGATAATAGTACTATATAATCCCCTCATTTTATGGTTATACGTAGTACGATGCAATATGTTACGTAAGTTTAAGATATCTCACACGTACTATAAAATGAAAACAACAATCTATTTGTAATTTAGAGCTGTCAAAACAAGTCATTGAGTCGGGTTTGGATCGGGTCATTTCGTGTCTCGGGTCATAATCAGGTTGGGTCGTGTCGGGTCAATATACCATCTGGGTTGAGTTCGGGTTCGGTCGGGTCGATATCAGGTCGGGTCATGTCGGGTTTTTTCCTATCCCGGTTTCAGGTCGGGTTCGGGTAGGGTCACATTTCGGTCAGGTTTGATTTCGGGTTCGAGTCTTATCAGGTCGGGTTTAAGTTGGTTTGTAGCAGATAATTTTCGGGTTTGGGTCTTATCGAGTCGGGTTTAATTCGGTTTGCAACATAGTTATTTTCGGGTTCGGGTCTTGGTTTGGATCGGATAATAATTGGATCAGATAGAATTCAGGTCGGTTCACTCTCGGGGACGGGTCAAACTCAGGTCTGATAATTAACCTATACATTTTAATTATTTTATATTGTAAAAAATATTGTTTAACTTATTTTAGAGTTAAATTTTATATAGACCAAATAATCGCGTGTTTTTGTCAAGTCAATATATATATAAAGTGAATATGGATTACGAACCAATGATCGATTTGGTTATCTCAAAATGTGAAAGTGAAAAACATTTACTCCCGCAACTCCAATTTCATTTTTGTAATGAGGGGTAAGTTAGTGGGTCACGTGCCAATGCGAGTCTCCTGTGTGATAGTGTAACCGTTTTTCTCGTTGTTGAGCACATTGACATAGGTCGCGCAGACAAAGAGAAAGAATGTCAGTTAGGATGTTAGATTCAATTCTTACCTCTCATCTCATCCAAATTGCAAAAAATAACTCGAAATTATTGTAAAAACAAAAAACAAGTTTTACTTTGCTTAATTTTGTTTCTTTATATAAAAACGTTAAGTTGTTCAACACGTTTAAATTTTTCGCTTTTTAATTTTTCAGTATCTAGTAATAAATAATTAAAATAGATTTATAGTTGAAGTTAATATTTGGTCGTGTCAATGACAAGTCGGGTTATTAACAGATCGGATAAATCGGGTAGCGGGTTGTCACAGGTTGAGTCAATAACAGGTTTCATCGAGTTACAATCGGTTTCTGGTTGACATCGGGTCTGGTATCGAATCGGGTTCGGGTCATTGTCGGTCGGGTCAGTTCGGTTTTCGGTCATTTTTGGGTCGGGTATCGGGTTCGGGTTCGGATGTTACAACATCGGGTTGAAATCGGTTATCGGTTTTTTCGGGTCGGGTACAGGTCGGGATTCGGATTACCTGTTTTACCGTAATTTGGGTCATGGTCGGTCACGGGTTCGATCGGTTCAGGTCGGATTTTCAGATCGGGTCAGTTTTTGACCGCAAATCAACTTCGGCTACTCTTATTCTCAATTGCTTTCAAGATTTGAACCTTGTTATATAAGTTATTATAAATTTAAGCATCGTTACGTTTGTGGAAAACGAGATCGAATTTATGGGCTCGTACTAGAGAGGGAAATTGTCTCTCTTTCATTATCTCTTACAATAGATGAATGAATTTATGGGCTCGTACTAGAGAGGGAAATTGTCTCTCTTTCATTATTTCTTACAATAGATGAATAAAATTGTAGGAAACTTAATTTCAAGAGGTAATATAAACCTATAATATTGTAACATTAAACTCATATTCTAACATTAATTAATTTTGGATTATTTGTGGGGCAGGGATTTTGTACGAGTGGCAAAAAGAATAAGGGTATTGCCGGTGAAGTCAAGTTCAAGGAAGCAGAAGACCACTAAACACTAGTCCAAGGCTCCTCATTGTAATGCTACAAGATATTCTAGCTAGCTTTATTGTTAAGAGTCCTGATCGTTTTTTTTTTCAATTTTCTTATTGAAAATTAGATAGAAAAATATGAACATTACAGACAATAGTTTATAGTTTTTTGTGGTTCACTTTTAAATCACGATGATTATTATAACGATGACTAGTTTTAAATTTATAAATCATAATTCAACTGAAATAATACAACTCCA

mRNA sequence

ATGTATAACAATATGAACAACAACAATAATATTATTGAGGTTCAAAGGCAAGAATCCTTAAAAAGAAGATGGCATGATAGTTTCTACACTAGACTTCTTACTTCACCCGCCCCTACTAACCCTACTACATCTGCGGCCGCGGCAACGCCCGCATTAATCATAGGTAAACCACCTCACCACCACCACCACCACCATCATCACTTTCTCCAACCAGGGAGGTTGTTGGATGGTGGCGGCGGTGGAGATCTAGTCCTTAATGTAATTCCCTCGGTCACGGTTGTGCTTGAGGGTCGTTCGATCTGTCACCGTATAAACCTCCAAAACCATGGTAGTTACCAAAGCCTAGCTAAAGCTCTTAGACAAATGTTTGTGGAAATTGCAAATATTCAACAAAATGAGGATGAAAGTGATGGGCAATTTGATTTGTCGAATGCTGTTCCTGGTTATGTTATTGCTTATGAAGATATGGAGAATGATCTTCTTCTTGCTGGTGATCTTCAGTGGAAGTACGGATTTTGTACGAGTGGCAAAAAGAATAAGGGTATTGCCGGTGAAGTCAAGTTCAAGGAAGCAGAAGACCACTAAACACTAGTCCAAGGCTCCTCATTGTAATGCTACAAGATATTCTAGCTAGCTTTATTGTTAAGAGTCCTGATCGTTTTTTTTTTCAATTTTCTTATTGAAAATTAGATAGAAAAATATGAACATTACAGACAATAGTTTATAGTTTTTTGTGGTTCACTTTTAAATCACGATGATTATTATAACGATGACTAGTTTTAAATTTATAAATCATAATTCAACTGAAATAATACAACTCCA

Coding sequence (CDS)

ATGTATAACAATATGAACAACAACAATAATATTATTGAGGTTCAAAGGCAAGAATCCTTAAAAAGAAGATGGCATGATAGTTTCTACACTAGACTTCTTACTTCACCCGCCCCTACTAACCCTACTACATCTGCGGCCGCGGCAACGCCCGCATTAATCATAGGTAAACCACCTCACCACCACCACCACCACCATCATCACTTTCTCCAACCAGGGAGGTTGTTGGATGGTGGCGGCGGTGGAGATCTAGTCCTTAATGTAATTCCCTCGGTCACGGTTGTGCTTGAGGGTCGTTCGATCTGTCACCGTATAAACCTCCAAAACCATGGTAGTTACCAAAGCCTAGCTAAAGCTCTTAGACAAATGTTTGTGGAAATTGCAAATATTCAACAAAATGAGGATGAAAGTGATGGGCAATTTGATTTGTCGAATGCTGTTCCTGGTTATGTTATTGCTTATGAAGATATGGAGAATGATCTTCTTCTTGCTGGTGATCTTCAGTGGAAGTACGGATTTTGTACGAGTGGCAAAAAGAATAAGGGTATTGCCGGTGAAGTCAAGTTCAAGGAAGCAGAAGACCACTAA

Protein sequence

MYNNMNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWKYGFCTSGKKNKGIAGEVKFKEAEDH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo22004	Spo22004	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo22004.1	Spo22004.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22004.1.exon.1	Spo22004.1.exon.1	exon
Spo22004.1.exon.2	Spo22004.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22004.1.CDS.1	Spo22004.1.CDS.1	CDS
Spo22004.1.CDS.2	Spo22004.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22004.1.utr3p.1	Spo22004.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo22004.1 vs. NCBI nr
Match: gi|902228795|gb|KNA21263.1| (hypothetical protein SOVF_044910 [Spinacia oleracea])

HSP 1 Score: 336.7 bits (862), Expect = 2.800e-89
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 1


		  
Query: 5   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH 64
           MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH
Sbjct: 1   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH 60

Query: 65  HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV 124
           HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV
Sbjct: 61  HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV 120

Query: 125 EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
           EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLL AGDLQWK
Sbjct: 121 EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLFAGDLQWK 165

[Close]

BLAST of Spo22004.1 vs. NCBI nr
Match: gi|731354262|ref|XP_010688488.1| (PREDICTED: auxin-responsive protein IAA33 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 233.4 bits (594), Expect = 3.300e-58
Identity = 126/182 (69.23%), Postives = 143/182 (78.57%), Query Frame = 1


		  
Query: 1   MYNNMNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPA--PTNPT-----TSAAAATPALI 60
           MYNNMNNN  +I++QRQESLKRRWHDSFYTRLL++P   PTNPT      +AAAA+  LI
Sbjct: 1   MYNNMNNNKTMIDIQRQESLKRRWHDSFYTRLLSAPPQPPTNPTPTAAVAAAAAASSPLI 60

Query: 61  IGKPPHHHHHHHHHFLQPGRLLDGGGGG--DLVLNVIPSVTVVLEGRSICHRINLQNHGS 120
           IGKPPH        FLQPGRL  GGGGG  DL  NV+P VTVVLEGRSIC R+NLQ H +
Sbjct: 61  IGKPPH--------FLQPGRLDGGGGGGGGDLYQNVVPPVTVVLEGRSICQRVNLQQHAN 120

Query: 121 YQSLAKALRQMFVEIANIQQN-EDESDG---QFDLSNAVPGYVIAYEDMENDLLLAGDLQ 170
           Y+SLAKALRQMF+++ NIQQN EDESD    Q DLSNA+PGY++AYEDMENDLLLAGDL 
Sbjct: 121 YESLAKALRQMFMDMINIQQNHEDESDNGSHQLDLSNALPGYLVAYEDMENDLLLAGDLH 174

[Close]

BLAST of Spo22004.1 vs. NCBI nr
Match: gi|870851259|gb|KMT03325.1| (hypothetical protein BVRB_8g198610 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 225.3 bits (573), Expect = 9.000e-56
Identity = 122/178 (68.54%), Postives = 139/178 (78.09%), Query Frame = 1


		  
Query: 5   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSP--APTNPT-----TSAAAATPALIIGKP 64
           MNNN  +I++QRQESLKRRWHDSFYTRLL++P   PTNPT      +AAAA+  LIIGKP
Sbjct: 1   MNNNKTMIDIQRQESLKRRWHDSFYTRLLSAPPQPPTNPTPTAAVAAAAAASSPLIIGKP 60

Query: 65  PHHHHHHHHHFLQPGRL--LDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSL 124
           P        HFLQPGRL    GGGGGDL  NV+P VTVVLEGRSIC R+NLQ H +Y+SL
Sbjct: 61  P--------HFLQPGRLDGGGGGGGGDLYQNVVPPVTVVLEGRSICQRVNLQQHANYESL 120

Query: 125 AKALRQMFVEIANIQQN-EDESDG---QFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
           AKALRQMF+++ NIQQN EDESD    Q DLSNA+PGY++AYEDMENDLLLAGDL WK
Sbjct: 121 AKALRQMFMDMINIQQNHEDESDNGSHQLDLSNALPGYLVAYEDMENDLLLAGDLHWK 170

[Close]

BLAST of Spo22004.1 vs. NCBI nr
Match: gi|1021477852|ref|XP_016178097.1| (PREDICTED: auxin-responsive protein IAA33 [Arachis ipaensis])

HSP 1 Score: 135.6 bits (340), Expect = 9.400e-29
Identity = 81/152 (53.29%), Postives = 101/152 (66.45%), Query Frame = 1


		  
Query: 19  SLKRRWHDSFYTR-LLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFLQPGRLLDG 78
           SLKRRW +S   R ++   AP+N +T+ +++ P    GK            LQ      G
Sbjct: 8   SLKRRWQESSGRRQIVIGAAPSNNSTNPSSSLP--FYGK------------LQG---FPG 67

Query: 79  GGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQNEDESD 138
               DLV  V+P+VTVVLEGRSICHRI+L NHGSYQSLAKALRQMFV+ A+       SD
Sbjct: 68  LEDDDLVSTVVPAVTVVLEGRSICHRISLHNHGSYQSLAKALRQMFVDGADSSGTGANSD 127

Query: 139 GQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
             +D+SNA+PG++IAYED+ENDLLLAGDL WK
Sbjct: 128 --YDVSNAIPGHLIAYEDIENDLLLAGDLSWK 140

[Close]

BLAST of Spo22004.1 vs. NCBI nr
Match: gi|641827310|gb|KDO46496.1| (hypothetical protein CISIN_1g046002mg, partial [Citrus sinensis])

HSP 1 Score: 132.5 bits (332), Expect = 8.000e-28
Identity = 85/169 (50.30%), Postives = 99/169 (58.58%), Query Frame = 1


		  
Query: 13  EVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFLQPG 72
           + QRQESLKRRW +    R   SP     TT+       +++  P ++        LQ  
Sbjct: 12  QAQRQESLKRRWQE----RRAVSPNMNCTTTT----NTGVLVNNPNNNR-------LQAF 71

Query: 73  RLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQN 132
             LD     DLV  V+P VTVVLEGRSIC RI+L  H SYQSLAKALRQMFVE       
Sbjct: 72  PGLDDD---DLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAI 131

Query: 133 EDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK--------YGFC 174
             E D   DLSNAVPG++IAYEDMENDLLLAGDL WK        +G+C
Sbjct: 132 NSEQD--LDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC 160

[Close]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP53_SPIOL (Auxin-responsive protein OS=Spinacia oleracea GN=SOVF_044910 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 1.900e-89
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 1


		  
Query: 5   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH 64
           MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH
Sbjct: 1   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHH 60

Query: 65  HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV 124
           HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV
Sbjct: 61  HHHFLQPGRLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFV 120

Query: 125 EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
           EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLL AGDLQWK
Sbjct: 121 EIANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLFAGDLQWK 165

[Close]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BPI3_BETVU (Auxin-responsive protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g198610 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.300e-56
Identity = 122/178 (68.54%), Postives = 139/178 (78.09%), Query Frame = 1


		  
Query: 5   MNNNNNIIEVQRQESLKRRWHDSFYTRLLTSP--APTNPT-----TSAAAATPALIIGKP 64
           MNNN  +I++QRQESLKRRWHDSFYTRLL++P   PTNPT      +AAAA+  LIIGKP
Sbjct: 1   MNNNKTMIDIQRQESLKRRWHDSFYTRLLSAPPQPPTNPTPTAAVAAAAAASSPLIIGKP 60

Query: 65  PHHHHHHHHHFLQPGRL--LDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSL 124
           P        HFLQPGRL    GGGGGDL  NV+P VTVVLEGRSIC R+NLQ H +Y+SL
Sbjct: 61  P--------HFLQPGRLDGGGGGGGGDLYQNVVPPVTVVLEGRSICQRVNLQQHANYESL 120

Query: 125 AKALRQMFVEIANIQQN-EDESDG---QFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
           AKALRQMF+++ NIQQN EDESD    Q DLSNA+PGY++AYEDMENDLLLAGDL WK
Sbjct: 121 AKALRQMFMDMINIQQNHEDESDNGSHQLDLSNALPGYLVAYEDMENDLLLAGDLHWK 170

[Close]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Match: A0A067E6F4_CITSI (Auxin-responsive protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046002mg PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.500e-28
Identity = 85/169 (50.30%), Postives = 99/169 (58.58%), Query Frame = 1


		  
Query: 13  EVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFLQPG 72
           + QRQESLKRRW +    R   SP     TT+       +++  P ++        LQ  
Sbjct: 12  QAQRQESLKRRWQE----RRAVSPNMNCTTTT----NTGVLVNNPNNNR-------LQAF 71

Query: 73  RLLDGGGGGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQN 132
             LD     DLV  V+P VTVVLEGRSIC RI+L  H SYQSLAKALRQMFVE       
Sbjct: 72  PGLDDD---DLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAI 131

Query: 133 EDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK--------YGFC 174
             E D   DLSNAVPG++IAYEDMENDLLLAGDL WK        +G+C
Sbjct: 132 NSEQD--LDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC 160

[Close]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Match: D7MNA0_ARALL (Auxin-responsive protein OS=Arabidopsis lyrata subsp. lyrata GN=IAA33 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.600e-27
Identity = 82/164 (50.00%), Postives = 98/164 (59.76%), Query Frame = 1


		  
Query: 10  NIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFL 69
           N  E Q Q+SL+RR+H              N TT     T    I KP   +H++ +   
Sbjct: 2   NSFEPQTQDSLQRRFHQD------------NTTTHQPRDTTTPFISKPASKNHNNSNSSS 61

Query: 70  QP-GRLLDGGG---GGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVE 129
           +  GR   G G     DLV +V+P VTVVLEGRSIC RI+L  HGSYQSLA ALRQMFV+
Sbjct: 62  EAAGRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLALALRQMFVD 121

Query: 130 IANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
            A       +S    DLSNA+PG++IAYEDMENDLLLAGDL WK
Sbjct: 122 GA-------DSTDDLDLSNAIPGHLIAYEDMENDLLLAGDLTWK 146

[Close]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Match: C0SVU3_ARATH (Auxin-responsive protein (Fragment) OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.800e-27
Identity = 82/164 (50.00%), Postives = 97/164 (59.15%), Query Frame = 1


		  
Query: 10  NIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFL 69
           N  E Q Q+SL+RR+H              N TT     T    I KP   +H++ +   
Sbjct: 2   NSFEPQSQDSLQRRFHQD------------NSTTQQPRDTTTPFIPKPASKNHNNSNSSS 61

Query: 70  -QPGRLLDGGG---GGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVE 129
              GR   G G     DLV +V+P VTVVLEGRSIC RI+L  HGSYQSLA ALRQMFV+
Sbjct: 62  GAAGRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD 121

Query: 130 IANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
            A       +S    DLSNA+PG++IAYEDMENDLLLAGDL WK
Sbjct: 122 GA-------DSTDDLDLSNAIPGHLIAYEDMENDLLLAGDLTWK 146

[Close]

BLAST of Spo22004.1 vs. ExPASy Swiss-Prot
Match: IAA33_ARATH (Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.500e-29
Identity = 82/164 (50.00%), Postives = 97/164 (59.15%), Query Frame = 1


		  
Query: 10  NIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFL 69
           N  E Q Q+SL+RR+H              N TT     T    I KP   +H++ +   
Sbjct: 2   NSFEPQSQDSLQRRFHQD------------NSTTQQPRDTTTPFIPKPASKNHNNSNSSS 61

Query: 70  -QPGRLLDGGG---GGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVE 129
              GR   G G     DLV +V+P VTVVLEGRSIC RI+L  HGSYQSLA ALRQMFV+
Sbjct: 62  GAAGRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD 121

Query: 130 IANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
            A       +S    DLSNA+PG++IAYEDMENDLLLAGDL WK
Sbjct: 122 GA-------DSTDDLDLSNAIPGHLIAYEDMENDLLLAGDLTWK 146

[Close]

BLAST of Spo22004.1 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.800e-6
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1


		  
Query: 76  DGGGGGDLVLNVIPSVT----VVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQ 135
           +G G  D      PS T    V LEG ++  +I+L+ H SY SL++AL+ MF    +   
Sbjct: 75  EGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGI 134

Query: 136 NEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWKYGFCTSGKK 179
              +++ Q     +   YV+ YED E D +L GD+ W      SG++
Sbjct: 135 ATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWDGREAGSGRR 181

[Close]

BLAST of Spo22004.1 vs. TAIR (Arabidopsis)
Match: AT5G57420.1 (indole-3-acetic acid inducible 33)

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-30
Identity = 82/164 (50.00%), Postives = 97/164 (59.15%), Query Frame = 1


		  
Query: 10  NIIEVQRQESLKRRWHDSFYTRLLTSPAPTNPTTSAAAATPALIIGKPPHHHHHHHHHFL 69
           N  E Q Q+SL+RR+H              N TT     T    I KP   +H++ +   
Sbjct: 2   NSFEPQSQDSLQRRFHQD------------NSTTQQPRDTTTPFIPKPASKNHNNSNSSS 61

Query: 70  -QPGRLLDGGG---GGDLVLNVIPSVTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVE 129
              GR   G G     DLV +V+P VTVVLEGRSIC RI+L  HGSYQSLA ALRQMFV+
Sbjct: 62  GAAGRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVD 121

Query: 130 IANIQQNEDESDGQFDLSNAVPGYVIAYEDMENDLLLAGDLQWK 170
            A       +S    DLSNA+PG++IAYEDMENDLLLAGDL WK
Sbjct: 122 GA-------DSTDDLDLSNAIPGHLIAYEDMENDLLLAGDLTWK 146

[Close]

BLAST of Spo22004.1 vs. TAIR (Arabidopsis)
Match: AT4G28640.2 (indole-3-acetic acid inducible 11)

HSP 1 Score: 51.2 bits (121), Expect = 8.200e-7
Identity = 28/83 (33.73%), Postives = 44/83 (53.01%), Query Frame = 1


		  
Query: 91  VTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQNEDESDGQFD-----LSNA 150
           V V ++G  I  +I+L  H  Y+SL+  L +MF++   +     E+DG  +     L + 
Sbjct: 139 VKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLK-PKLGSRTLETDGHMETPVKILPDG 198

Query: 151 VPGYVIAYEDMENDLLLAGDLQW 169
             G V+ YED E D +L GD+ W
Sbjct: 199 SSGLVLTYEDKEGDWMLVGDVPW 220

[Close]

BLAST of Spo22004.1 vs. TAIR (Arabidopsis)
Match: AT1G04550.2 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.300e-6
Identity = 24/79 (30.38%), Postives = 42/79 (53.16%), Query Frame = 1


		  
Query: 91  VTVVLEGRSICHRINLQNHGSYQSLAKALRQMFVEIANIQQNEDESDGQFDLSNAVPGYV 150
           V V ++G  I  +++++ H SY++LA+ L +MF  +      E        L +    +V
Sbjct: 127 VKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVK--PLRLLDGSSDFV 186

Query: 151 IAYEDMENDLLLAGDLQWK 170
           + YED E D +L GD+ W+
Sbjct: 187 LTYEDKEGDWMLVGDVPWR 203

The following BLAST results are available for this feature:

BLAST of Spo22004.1 vs. NCBI nr
BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
BLAST of Spo22004.1 vs. ExPASy Swiss-Prot
BLAST of Spo22004.1 vs. TAIR (Arabidopsis)

BLAST of Spo22004.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902228795\|gb\|KNA21263.1\|	2.8e-89	99.3	hypothetical protein SOVF_0449...	[more]
gi\|731354262\|ref\|XP_010688488.1\|	3.3e-58	69.2	PREDICTED: auxin-responsive pr...	[more]
gi\|870851259\|gb\|KMT03325.1\|	9.0e-56	68.5	hypothetical protein BVRB_8g19...	[more]
gi\|1021477852\|ref\|XP_016178097.1\|	9.4e-29	53.2	PREDICTED: auxin-responsive pr...	[more]
gi\|641827310\|gb\|KDO46496.1\|	8.0e-28	50.3	hypothetical protein CISIN_1g0...	[more]

BLAST of Spo22004.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RP53_SPIOL	1.9e-89	99.3	Auxin-responsive protein OS=Sp...	[more]
A0A0J8BPI3_BETVU	6.3e-56	68.5	Auxin-responsive protein OS=Be...	[more]
A0A067E6F4_CITSI	5.5e-28	50.3	Auxin-responsive protein (Frag...	[more]
D7MNA0_ARALL	1.6e-27	50.0	Auxin-responsive protein OS=Ar...	[more]
C0SVU3_ARATH	2.8e-27	50.0	Auxin-responsive protein (Frag...	[more]

BLAST of Spo22004.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
IAA33_ARATH	2.5e-29	50.0	Auxin-responsive protein IAA33...	[more]
IAA22_ORYSJ	3.8e-6	32.7	Auxin-responsive protein IAA22...	[more]

BLAST of Spo22004.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G57420.1	1.4e-30	50.0	indole-3-acetic acid inducible...	[more]
AT4G28640.2	8.2e-7	33.7	indole-3-acetic acid inducible...	[more]
AT1G04550.2	5.3e-6	30.3	AUX/IAA transcriptional regula...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 86..169 score: 5.8
None	No IPR available	PANTHER	PTHR31734:SF7	AUXIN-RESPONSIVE PROTEIN IAA33	coord: 86..169 score: 5.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity