Spo21956.1 (mRNA) | SpinachBase

Overview


Name	Spo21956.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	TMPIT-like protein
Location	SpoScf_01385 : 37708 .. 40811 (+)
Sequence length	1875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGGTATGGAGGAAATAAGGTATGGAGGAACAGGTGGAGGGAACTTTTTTGGTGGGTTTAATGGTGGAGGTCGAGTTGGGTGCGAATTTGTTGGTAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGTAATTACTCAAGAAAGGCACTGCCAGGCCCAAATTTCTGATCCACTTTCTCTCCTCTACATCTACCTAATCAACCCAACCCAGTTCTAGAGGTCAACACTCCTTCTAACTTCAAGTTTAGACCAACTAGTATAGGACACGTTTCTGGGCCATCAGACTTAAATCTATCTCAGCCCAATCATCTTTAAACCCATTCTTTTTCCCAACTTTTCCAGCCCACAAACTCCCAATTTTCTGATTTTTTCTTCCACATCTAAATTCACTTCTTTAGTACAAGTTTCTACACCCAAACCATTCAGCCCTTCTCTTTTTAATTCCCTCAACCCACAGCCTTTCCATCTCACTTCAGAAAATTCCAACTTCAACCAATTTTTACTTCCACCCTATGACAACTCCAAGGCTAACTTTTTCTTAGCTACACCACCAAAGGAAGTACAAGTACTCACCAATGAGGAGCTTGAACGCCAGTGGAAGCCGGGCATCAATTCTCACACGGACATTGCTAATTGTTGCCAAGGCCGGGAATTTTGTGCTGATTACTATCCACCTTGAGGACAAGGTGGAAGTTTGGGGGGCCGGTAATGCAATGAACTGATATTATGGAGGGGTACTTTAGGAAATAGCTATTTAAGTTAGTACAAGCAGATTGGGGAACAAGTTAGGGGTTAGTCAGGGAGGTAGTACTATATATATAGGCAGCTGTAGAGAAGGAATGTTATGTTGAATATTGTTGAGGAATTTGGTTGAGCTTTTAAGAGCTCATTGGGAGAGAAATCAAGCCTCTCGAATGCTTGAATATCAGTTACTTGTGTTTTCAGTTTATTAATCAAATTTTCATTAGTTTCTTGATTTATGGTCTGTTATCTATGCTAATTCATAGCAGGTAAGCAGTAAAATTCTCTTTTTTTTGTGCCAATAGGATCCGTTATATCCTAAATGCAATGATCAAACTTGGTTGAAAGACTATGCTTATTGAACTCATGTACTCTGCAAAAATTTCCAGGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTGAGCTACCTTGTCTCTCTGCGTATTTTACAGAGACGGATAATAGGGTTGCATTAAGCATCTTCTTAATACTCATGCTTCATATTTTGACGCCATTATGAAATAGTGACAACTGACAAGTACCTTTGACAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAGAGAAGGCTTTTCCAAAAGTTCAGTAGTCTCATACTCCCTTTACTTCTTAATTATATCCTTGGTCTGTTAGCTTTGTGTTTCTCAAGATTCTTTTTAATGGAGTTTAGAATTGTACACATTGTTTTATAGCAGATTTTACACCCCCTCCGCCCGAAAAAAATAAGAAAAACAGAGGTAATTATGTAAAAGTTTTCTGTCTTTACCACAAGTTCGAATATTTGTATTGTTTAGCAGATTGCCTGAATTGGTCTGTATTTGTCAATAATAAGATGGGATGATCCCCTATATTCAATTTTGATTGATCCACTCTCTATTTCTTCCTAATCTTTCTCAAAATTGATCATTGAAATCCCGAAAATGCTCTCACTATGTTCGTGGTTCTTGTAAAATTCTCAGCATGAATTCATGAAACACCTTTAAACAATCTGAAGATGCAAACAAGTTGATGTACTGAGGGCTTGAGCAGAGCCCGAGGGTTTGACTCTTGTACCG

mRNA sequence

ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAGAGAAGGCTTTTCCAAAAGTTCAGTAGTCTCATACTCCCTTTACTTCTTAATTATATCCTTGGTCTGTTAGCTTTGTGTTTCTCAAGATTCTTTTTAATGGAGTTTAGAATTGTACACATTGTTTTATAGCAGATTTTACACCCCCTCCGCCCGAAAAAAATAAGAAAAACAGAGGTAATTATGTAAAAGTTTTCTGTCTTTACCACAAGTTCGAATATTTGTATTGTTTAGCAGATTGCCTGAATTGGTCTGTATTTGTCAATAATAAGATGGGATGATCCCCTATATTCAATTTTGATTGATCCACTCTCTATTTCTTCCTAATCTTTCTCAAAATTGATCATTGAAATCCCGAAAATGCTCTCACTATGTTCGTGGTTCTTGTAAAATTCTCAGCATGAATTCATGAAACACCTTTAAACAATCTGAAGATGCAAACAAGTTGATGTACTGAGGGCTTGAGCAGAGCCCGAGGGTTTGACTCTTGTACCG

Coding sequence (CDS)

ATGCACGCATGGATAGGGGAGGATTTTGCCTACATCACAAGAAAAAGAGGTCAAGGAATTCCAGATATGGAAGAGGAGCGGAAAATCCGGAGAGAGCTTCAACTTCCAGAGTTCAATGGAGTTAATCCCGAGGGTTGGATTCTGGAATTGGAGGATACATTCCATTTTTTCCGGCTTAATGAGGAGGCGAAGTTAAAGGCTGCCATTATAACACTTGACGGAGACGCGCTACAGTGGTTCCAATGGGAACATCAGCGGTGGCCGTTTAATGACTGGCATGAATTGAAGAGCCAGGTGGTGCGACGCTTTGGTTTTTCACGACAAACTCCGAAAAAGCTCAACGGCAAGGCAGAACACCAGAATTTCTCCTCGAGTCAAGTCTGTGGTGGACTGCCAATGTTTATAGAAGCTATGGTCGGCAGTCAAGGCAATTATCATTCACCGTCTGAGAACCATAAAAAGGAGGCCAAGCCAATAGATCTGATGGAGGAAGAAAGAGAGGTGGTGAGTATGAGTGAGGTTCATTTAACAACCACTGACTTTCAAACTTCATGTGAGAAAGAGTCCGGTAGCCTACTTACAATGGAGTCTTTGGCTATACCTGGTAGTACGTTACCGGCGAAGGCGACGCTAGTAACATCAGATTTGGAGGAAATAAGTCTGGCGGAGGAAGTGGTGGGAGGACATGTTGATGGACGGAAAAACATTCTCATCGGCAACGACCATAGTGATGGAGGAATATTCGAGAAAGGAGGAGCCGGAGGTAGTGGTTCCGGCGGTGGTCCTGGCCTTTTGGCCGGCAATTGTAAGATTGGTGGTCGAATTCCAACCTACGGTGGACTGATTAGGGAAGATTATGGATTCTTCAAAGGTGGATCTGAAGCTAGTGGCTCCTTTGGAGATCTGGGTTTCGCCGGCAGAGTTGTGGGTGGTGATTATGGTGTTTTAACCGGCGGAGAAGAGGAGTTTGTCGAGGGTCACACCGATTCGAGTGCAACTGGTGATGGCCCGAGCAACGACGTACCAGTAGGTGGTGCTGTGCACCAGCAGCTTCAAGAAATCTTTCAAAAGATTCCAGAAATGGAGATTAGAAAAAAAGCGTATGGGAGAAGATATGCCGAGTCATTGAACAGCTTGAGGAGGAAGCTAAATGTAGCTGATGCAATTAGTAAGGGCAATGTTGGTTTCGAGGCTTATGTTGGACTGTTGTTGCTTCAAACAGCATTTGTTGGAGTTGTATCCGAATGGCAGGTCGTTTTTTGTGGATTTCTTCTGGTTTTAATGGCAATTGGGAATTTCGCAAATACGGTGCAGACTTTACTCGTCAAATCACGGTTTAAGGCAAAGATGAAAAGGACTAAAAGTAAGCAGCAGTTAGATTAG

Protein sequence

MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLNEEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKKLNGKAEHQNFSSSQVCGGLPMFIEAMVGSQGNYHSPSENHKKEAKPIDLMEEEREVVSMSEVHLTTTDFQTSCEKESGSLLTMESLAIPGSTLPAKATLVTSDLEEISLAEEVVGGHVDGRKNILIGNDHSDGGIFEKGGAGGSGSGGGPGLLAGNCKIGGRIPTYGGLIREDYGFFKGGSEASGSFGDLGFAGRVVGGDYGVLTGGEEEFVEGHTDSSATGDGPSNDVPVGGAVHQQLQEIFQKIPEMEIRKKAYGRRYAESLNSLRRKLNVADAISKGNVGFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTKSKQQLD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21956	Spo21956	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21956.1	Spo21956.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21956.1.exon.1	Spo21956.1.exon.1	exon
Spo21956.1.exon.2	Spo21956.1.exon.2	exon
Spo21956.1.exon.3	Spo21956.1.exon.3	exon
Spo21956.1.exon.4	Spo21956.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21956.1.CDS.1	Spo21956.1.CDS.1	CDS
Spo21956.1.CDS.2	Spo21956.1.CDS.2	CDS
Spo21956.1.CDS.3	Spo21956.1.CDS.3	CDS
Spo21956.1.CDS.4	Spo21956.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21956.1.utr3p.1	Spo21956.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731346560|ref|XP_010684517.1| (PREDICTED: uncharacterized protein LOC104899081 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.4 bits (620), Expect = 7.600e-61
Identity = 171/389 (43.96%), Postives = 209/389 (53.73%), Query Frame = 1


		  
Query: 5   IGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLNEEAK 64
           + E FA I        PD+ + + IR ELQLP F+G NPE WI E+E  FH F  +E+ K
Sbjct: 8   VREGFAEIMWSLNPCYPDLRKLQVIRNELQLPLFDGRNPEEWIDEMEIYFHLFWFSEKEK 67

Query: 65  LKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKKLNGKAEHQNFSS 124
           L+A I+ L+G+AL WFQWEH R PF  W ELK+ V RRF   R T  K      HQN ++
Sbjct: 68  LEAVIVGLEGEALSWFQWEHHRRPFYRWEELKALVARRF---RTTSTKSWKGWSHQNRAA 127

Query: 125 SQVCGGLPMFIEAMVGSQGNYHSPSENHKKEAKPIDLMEEEREVVSMSEVHLTTTDFQTS 184
                        MV       + S +  +E K       E    +  +V L  +  Q +
Sbjct: 128 D------------MVEKIPEIGASSTSLLEEVKTSICGGGEEIYHNQMKVRLVVSLNQAA 187

Query: 185 CEKESGSLLTMESLAIPGSTLPAKATLVTSDLEEISLAEEVVGGHVDGRKNILIGNDHSD 244
             K   +     S +  G     K   V S       A EV GG     +   IG     
Sbjct: 188 KNKSENA-----SFSFFGGYTGGKQAGVAS-------AFEVYGGSSSFAREAAIGTS--- 247

Query: 245 GGIFEKGGAGGSGSGGGPGLLAGNCKIGGRIPTYGGLIREDYGFFKGGSEASGSFGDLGF 304
              FE+G     G  GGP  LAGNCK GG+  T GGL RE+YGFFKG SEASGS G  GF
Sbjct: 248 ---FEQG-----GDRGGPEFLAGNCKFGGKTATCGGLNREEYGFFKGRSEASGSGGGPGF 307

Query: 305 AGRVVGGDYGVLTGGEEEFVEGHTDSSATGDGPSNDVPVGGAVHQQLQEIFQKIPEMEIR 364
           AGRV GG  G  TG EEEF+     +SA G GPS    VGG VH++LQEIFQKI E+EI+
Sbjct: 308 AGRVAGGHAGGSTGEEEEFI-----TSAAGSGPSGGDMVGGVVHRELQEIFQKISEVEIQ 353

Query: 365 KKAYGRRYAESLNSLRRKLNVADAISKGN 394
           K+ YGRR+AESL SLR KLN+ DAI+KGN
Sbjct: 368 KEEYGRRFAESLISLRGKLNIDDAITKGN 353

[Close]

BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731318549|ref|XP_010669787.1| (PREDICTED: keratin, type I cytoskeletal 9-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 165.2 bits (417), Expect = 2.600e-37
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYI  KR +   D+EEER+IRRELQLPEFNG NPEGWILELEDTFHFF+L+
Sbjct: 12  MQMWINEEFAYIKHKRDREFSDLEEERRIRRELQLPEFNGRNPEGWILELEDTFHFFQLD 71

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRF 104
           E AKLKAAI+TL+GDA +WF+WEH+R  F DW ELK Q+VR F
Sbjct: 72  ESAKLKAAIMTLEGDAQRWFEWEHRRLSFRDWQELKEQIVRHF 114

[Close]

BLAST of Spo21956.1 vs. NCBI nr
Match: gi|870860211|gb|KMT11574.1| (hypothetical protein BVRB_5g108880 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 161.8 bits (408), Expect = 2.900e-36
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYIT KR +G  D+EEER+IRRELQLPEFNG NPEGWI+ELED FHFF+L+
Sbjct: 12  MQMWINEEFAYITHKRDRGFSDLEEERRIRRELQLPEFNGRNPEGWIMELEDIFHFFQLD 71

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFG 105
           E AKLKAA +TL GDA +WF+WEH+R PF++W ELK+ V R FG
Sbjct: 72  ESAKLKAATMTLVGDAHRWFEWEHRRRPFHEWKELKALVWRYFG 115

[Close]

BLAST of Spo21956.1 vs. NCBI nr
Match: gi|731372571|ref|XP_010666388.1| (PREDICTED: uncharacterized protein LOC104883545 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 161.0 bits (406), Expect = 5.000e-36
Identity = 130/351 (37.04%), Postives = 168/351 (47.86%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           MH WI E+FAYIT KR   I D EEER+IR+ELQ+ E NG N + WIL+LED F FF+LN
Sbjct: 12  MHTWIREEFAYITHKRDLEISDSEEERRIRQELQIHEINGGNSKDWILQLEDFFEFFQLN 71

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKKLNGKAEHQ 120
           EEAKLK AII LDGDA +WF+ EH+R PF DW ELK Q++R+F  S  TP         Q
Sbjct: 72  EEAKLKVAIIGLDGDARRWFEDEHRRLPFYDWQELKGQMLRQF-CSTSTPS-------WQ 131

Query: 121 NFSSSQVCGGLPMFIEAMVG----SQGNYHSP----SENHK----KEAKPIDLMEEEREV 180
             S S  C      + + +G      G    P    SE+H     +E +    +EEE E 
Sbjct: 132 AQSDSMQCNDKEKRLNSSLGYGYGHGGEAEFPGDCTSESHSVVVAEELQEDPGIEEEDEK 191

Query: 181 VSMSEVHLTTTDFQTSCEKESGSLLTMESLAIPGSTLPAKATLVTSDLEEISLAEEVVGG 240
              S++     D+ T            ES+A+     P K        +     +EV GG
Sbjct: 192 CESSDLKKIGEDYPT---------FASESMAVYQIVGPRKGATCGGPEDGF---KEVAGG 251

Query: 241 HVDGRKNILIGNDHSDGGIFEKG----------------------GAGGSGSGGGPGLLA 300
           +    +   +G +  D    + G                      G  G GSGGGPG  A
Sbjct: 252 YTGKGRRGFMGRNSGDNVFMDGGINPHQGVNLRHDAVKRRQMVQQGPVGCGSGGGPGNFA 311

Query: 301 GNCKIGGRIPTYGGL------IREDYGFFKGGSEASGSFGDLG-FAGRVVG 311
           G  K G    +YGGL      +  +  F +GGS ASGS G  G F+G  +G
Sbjct: 312 GCGKFGVGTASYGGLRDHLGSLDREGRFLRGGSAASGSGGGPGKFSGEKLG 342

[Close]

BLAST of Spo21956.1 vs. NCBI nr
Match: gi|870850668|gb|KMT02734.1| (hypothetical protein BVRB_8g193200 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 154.8 bits (390), Expect = 3.600e-34
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYIT+K   GI D+EEE++IRRELQLP F+G N E WIL LED+F +F+LN
Sbjct: 249 MQRWIYEEFAYITQKGNGGISDLEEEQRIRRELQLPSFDGRNYEEWILILEDSFQYFQLN 308

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKK-LNGKAEH 120
           EE K +AA++ L+GDA +WF+WEH+RW FN W E++  + R F  S  T ++  +G  +H
Sbjct: 309 EETKFQAAVMALEGDAQRWFEWEHRRWSFNGWQEMEKHLSRSFNPSSMTTQRGWDGMVKH 368

Query: 121 QNFSSSQVCGGLPMFIEAMVGSQGNYHSPSENHKKEAK 158
           QN S S   GG+           G    P +  +K  +
Sbjct: 369 QNISMSYSHGGMSNVTGCCTKDNGKLVVPKKQARKSGR 406

[Close]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHJ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108880 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.000e-36
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYIT KR +G  D+EEER+IRRELQLPEFNG NPEGWI+ELED FHFF+L+
Sbjct: 12  MQMWINEEFAYITHKRDRGFSDLEEERRIRRELQLPEFNGRNPEGWIMELEDIFHFFQLD 71

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFG 105
           E AKLKAA +TL GDA +WF+WEH+R PF++W ELK+ V R FG
Sbjct: 72  ESAKLKAATMTLVGDAHRWFEWEHRRRPFHEWKELKALVWRYFG 115

[Close]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193200 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.500e-34
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYIT+K   GI D+EEE++IRRELQLP F+G N E WIL LED+F +F+LN
Sbjct: 249 MQRWIYEEFAYITQKGNGGISDLEEEQRIRRELQLPSFDGRNYEEWILILEDSFQYFQLN 308

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFGFSRQTPKK-LNGKAEH 120
           EE K +AA++ L+GDA +WF+WEH+RW FN W E++  + R F  S  T ++  +G  +H
Sbjct: 309 EETKFQAAVMALEGDAQRWFEWEHRRWSFNGWQEMEKHLSRSFNPSSMTTQRGWDGMVKH 368

Query: 121 QNFSSSQVCGGLPMFIEAMVGSQGNYHSPSENHKKEAK 158
           QN S S   GG+           G    P +  +K  +
Sbjct: 369 QNISMSYSHGGMSNVTGCCTKDNGKLVVPKKQARKSGR 406

[Close]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBW8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092900 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.300e-30
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1


		  
Query: 1   MHAWIGEDFAYITRKRGQGIPDMEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLN 60
           M  WI E+FAYIT KR   I D EEE +IR+ELQ+ EFNG N + WIL+LED F FF+LN
Sbjct: 12  MQTWIREEFAYITHKRDLEISDSEEESRIRQELQIHEFNGGNSKDWILQLEDFFEFFQLN 71

Query: 61  EEAKLKAAIITLDGDALQWFQWEHQRWPFNDWHELKSQVVRRFG 105
           EEAKLK +II L+GDA +WF+ EH+R PF DW ELK Q++R FG
Sbjct: 72  EEAKLKVSIIGLNGDARRWFEDEHRRRPFYDWQELKGQMLRHFG 115

[Close]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUC2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027750 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.100e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


		  
Query: 395 GFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTK 454
           GFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTK
Sbjct: 294 GFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTK 353

Query: 455 SKQQLD 461
           SKQQLD
Sbjct: 354 SKQQLD 359

[Close]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHR5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177680 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1


		  
Query: 16  RGQGIPDMEEERKIRRELQLPE-FNGVNPEGWILELEDTFHFFRLNEEAKLKAAIITLDG 75
           R   + ++EE +  R   +  E FN  N +GWIL+LEDTFHFFRL+EEAKLKAAII+LDG
Sbjct: 40  RTSHVREVEEYQSSRMSGESDESFNFQNFDGWILQLEDTFHFFRLDEEAKLKAAIISLDG 99

Query: 76  DALQWFQWEHQRWPFNDWHELKSQVVRRFGFS-----RQTPKKLNGKAEHQNFSSSQVCG 132
           +A +WF+WEHQRWPF  W ELK+QV R FG S     ++ P  L    +H++ SSS    
Sbjct: 100 EAKRWFEWEHQRWPFYRWLELKNQVRRCFGSSPAVSWQKEPTTLMFDDKHRHSSSSHGYS 159

[Close]

BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT1G33230.1 (TMPIT-like protein)

HSP 1 Score: 93.6 bits (231), Expect = 3.400e-19
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1


		  
Query: 395 GFEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTK 454
           GFEAYVG  LL+T  +GVV+EWQV+ CG LLV+MAIGNF NTV+TL+VKSRFKAKMKR+K
Sbjct: 283 GFEAYVGFQLLRTVLMGVVAEWQVLVCGILLVVMAIGNFINTVETLMVKSRFKAKMKRSK 342

Query: 455 SKQQL 460
           S+ +L
Sbjct: 343 SRAEL 347

[Close]

BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT4G10430.1 (TMPIT-like protein)

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-17
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1


		  
Query: 396 FEAYVGLLLLQTAFVGVVSEWQVVFCGFLLVLMAIGNFANTVQTLLVKSRFKAKMKRTKS 455
           FEAYVGLLLL+    GVV+EWQV+ CG LLV+MA+GNF NTV+TL+ KSR KAKMKR+KS
Sbjct: 283 FEAYVGLLLLRKTVTGVVNEWQVMVCGILLVVMAVGNFINTVETLMAKSRVKAKMKRSKS 342

Query: 456 KQQLD 461
           + +L+
Sbjct: 343 RAELN 347

[Close]

BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Match: AT1G67020.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6
Identity = 22/81 (27.16%), Postives = 41/81 (50.62%), Query Frame = 1


		  
Query: 23  MEEERKIRRELQLPEFNGVNPEGWILELEDTFHFFRLNEEAKLKAAIITLDGDALQWFQW 82
           ++    + R +++P F+G     W  ++E  F   R  +  KL    ++L+G AL+WF  
Sbjct: 100 LDNRSSLIRRIEMPVFDGSGVYEWFSKVERFFRVGRYQDSDKLDLVALSLEGVALKWFLR 159

Query: 83  EHQRWPFNDWHELKSQVVRRF 104
           E     F DW+  + +++ RF
Sbjct: 160 EMSTLEFRDWNSFEQRLLARF 180

The following BLAST results are available for this feature:

BLAST of Spo21956.1 vs. NCBI nr
BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
BLAST of Spo21956.1 vs. ExPASy Swiss-Prot
BLAST of Spo21956.1 vs. TAIR (Arabidopsis)

BLAST of Spo21956.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731346560\|ref\|XP_010684517.1\|	7.6e-61	43.9	PREDICTED: uncharacterized pro...	[more]
gi\|731318549\|ref\|XP_010669787.1\|	2.6e-37	70.8	PREDICTED: keratin, type I cyt...	[more]
gi\|870860211\|gb\|KMT11574.1\|	2.9e-36	69.2	hypothetical protein BVRB_5g10...	[more]
gi\|731372571\|ref\|XP_010666388.1\|	5.0e-36	37.0	PREDICTED: uncharacterized pro...	[more]
gi\|870850668\|gb\|KMT02734.1\|	3.6e-34	46.2	hypothetical protein BVRB_8g19...	[more]

BLAST of Spo21956.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CHJ4_BETVU	2.0e-36	69.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8BRV9_BETVU	2.5e-34	46.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8BBW8_BETVU	6.3e-30	62.5	Uncharacterized protein OS=Bet...	[more]
A0A0K9RUC2_SPIOL	2.1e-25	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QHR5_SPIOL	1.2e-23	52.4	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo21956.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21956.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G33230.1	3.4e-19	72.3	TMPIT-like protein	[more]
AT4G10430.1	1.4e-17	67.6	TMPIT-like protein	[more]
AT1G67020.1	2.0e-6	27.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012926	TMPIT-like	PANTHER	PTHR21433	TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA	coord: 395..457 score: 3.4
IPR012926	TMPIT-like	PFAM	PF07851	TMPIT	coord: 395..446 score: 3.7
None	No IPR available	PANTHER	PTHR21433:SF4	SUBFAMILY NOT NAMED	coord: 395..457 score: 3.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane