Spo21476.1 (mRNA) | SpinachBase

Overview


Name	Spo21476.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ribulose bisphosphate carboxylase small chain (4.1.1.39)
Location	SpoScf_01005 : 95792 .. 96599 (-)
Sequence length	543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTAATCGATTACTACTCGATCTGTAATTCCACTATTCCACTTGGTAGTAGATAATGGAAAAATACATATATATATATATATATATATATATTAGTGACAGATTGATAACATGAAACAAGACCAATTAATTAATTAATTATCTAATTTGTTGAAAAATATAATGCAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAAGTAAGTTAATTAATTAGTCCTCCTATATTTAATTATTAATTAATAAGTATATGATATTGATAATGATAATTATAATTATATATGTTATGTTAATTGTAGCATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

mRNA sequence

ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Coding sequence (CDS)

ATGGCTTCCAGCTTGATGTACAACGCCACCACCGCCGTGGCTACAGCCAGCGTAGCTCAGGCTAACATGGTGGGTCCTTTCACCGGCTTGAAGTCTACCGTAGGCTTCCCTGTTACCAAGAAGAACGATGACATTACCTCCCTTGCTAGCAACGGTGGAAGAGTCCAGTGCATGAAGGTATGGCCAACACAAAACATGAAGAGGTACGAGACTCTATCGTACCTTCCACCTCTTACCACAGACCAGTTGGCGCGGCAGGTCGATTACCTTCTTAACAATAAATGGGTTCCTTGCTTAGAATTCGAGACTGAACATGGATTTGTATACCGTGAGCACCACAATTCCCCAGGGTACTATGACGGTCGTTACTGGACAATGTGGAAGTTGCCGATGTTCGGGTGCACTGACCCGGCCCAGGTTTTGAATGAGCTCGAAGAATGCAAGAAGGAGTACCCCAACGCCTTCATCCGTATCATTGGATTCGACAGCAACCGTCAAGTCCAATGTGTCAGTTTCATTGCCTACAAGCCTGAAGGCTACTAA

Protein sequence

MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21476	Spo21476	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21476.1	Spo21476.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21476.1.CDS.3	Spo21476.1.CDS.3	CDS
Spo21476.1.CDS.2	Spo21476.1.CDS.2	CDS
Spo21476.1.CDS.1	Spo21476.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21476.1.exon.3	Spo21476.1.exon.3	exon
Spo21476.1.exon.2	Spo21476.1.exon.2	exon
Spo21476.1.exon.1	Spo21476.1.exon.1	exon

Homology

[Close]

BLAST of Spo21476.1 vs. NCBI nr
Match: gi|902238638|gb|KNA25267.1| (hypothetical protein SOVF_008110 [Spinacia oleracea])

HSP 1 Score: 381.7 bits (979), Expect = 7.000e-103
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180

[Close]

BLAST of Spo21476.1 vs. NCBI nr
Match: gi|902213966|gb|KNA17382.1| (hypothetical protein SOVF_080400 [Spinacia oleracea])

HSP 1 Score: 355.9 bits (912), Expect = 4.100e-95
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180

[Close]

BLAST of Spo21476.1 vs. NCBI nr
Match: gi|3914583|sp|Q43832.1|RBS2_SPIOL (RecName: Full=Ribulose bisphosphate carboxylase small chain 2, chloroplastic; Short=RuBisCO small subunit 2; Flags: Precursor)

HSP 1 Score: 352.4 bits (903), Expect = 4.500e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180

[Close]

BLAST of Spo21476.1 vs. NCBI nr
Match: gi|2529378|gb|AAB81105.1| (ribulose 1,5-bisphosphate carboxylase small subunit [Spinacia oleracea])

HSP 1 Score: 352.1 bits (902), Expect = 5.900e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180

[Close]

BLAST of Spo21476.1 vs. NCBI nr
Match: gi|691189059|gb|AIR75139.1| (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial [Spinacia turkestanica])

HSP 1 Score: 332.0 bits (850), Expect = 6.400e-88
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 1


		  
Query: 9   ATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTSAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165

[Close]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2B5_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_008110 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 4.900e-103
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180

[Close]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REV1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080400 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 2.900e-95
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180

[Close]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD37_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=SOVF_080380 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.200e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180

[Close]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: O20253_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.100e-94
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSARVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180

[Close]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Match: A0A089VLB2_9CARY (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Spinacia turkestanica GN=rbcS PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.400e-88
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 1


		  
Query: 9   ATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKVWPTQNMKR 68
           A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKVWPTQNMKR
Sbjct: 1   AAVATVSRTSAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKR 60

Query: 69  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYDGRYWTMWK 128
           YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYDGRYWTMWK
Sbjct: 61  YETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWK 120

Query: 129 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 174
           LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI
Sbjct: 121 LPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 165

[Close]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 2.800e-96
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASS++ +A  A  + + AQA+MV PFTGLKSTVGFP TKKNDDITSLASNGGRVQCMKV
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFET+HGFVYREHHNSPGYYD
Sbjct: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP GY
Sbjct: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY 180

[Close]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.500e-78
Identity = 136/180 (75.56%), Postives = 152/180 (84.44%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMKV 60
           MASSLM NA TAV  AS AQANMV PF GLKS   FPVT+K++DITS+ASNGGRVQCM+V
Sbjct: 1   MASSLMSNAITAVVGASGAQANMVAPFNGLKSIASFPVTRKSNDITSIASNGGRVQCMQV 60

Query: 61  WPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYYD 120
           WP    K++ETLSYLPPL+  QL  QV YLLNN W+PC+EFE EH FVYRE+H SPGY D
Sbjct: 61  WPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQD 120

Query: 121 GRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEGY 180
           GRYWTMWKLPM+GCTDPAQVLNE+EE KK YP+AFIRIIGFD+ RQVQCVSFIA+KP GY
Sbjct: 121 GRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPGY 180

[Close]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.700e-77
Identity = 136/181 (75.14%), Postives = 152/181 (83.98%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATA-SVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A + AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM+
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRKNNDITSVASNGGRVQCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP   MK++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQCVSFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 180

[Close]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 8.600e-77
Identity = 134/181 (74.03%), Postives = 151/181 (83.43%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATA-SVAQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A + AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM+
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRKNNDITSVASNGGRVQCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180

[Close]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.600e-76
Identity = 136/181 (75.14%), Postives = 151/181 (83.43%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASV-AQANMVGPFTGLKSTVGFPVTKKNDDITSLASNGGRVQCMK 60
           MASSLM NA T +A A+  AQANMV PF GLKS   FPVT+KN+DITS+ASNGGRVQCM 
Sbjct: 1   MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRKNNDITSVASNGGRVQCM- 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP   MK++ETLSYLPPL+ + L ++V YLLNN WVPCLEFE  HGFVYREH N+PGYY
Sbjct: 61  VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLPMFGCTDP+QV+ ELEE KK YP AFIRIIGFD+ RQVQCVSFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKPAS 180

[Close]

BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A)

HSP 1 Score: 280.4 bits (716), Expect = 7.700e-76
Identity = 129/181 (71.27%), Postives = 150/181 (82.87%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++ +AT     AS AQA MV PF GLKS+  FP T+K N+DITS+ SNGGRV CM+
Sbjct: 1   MASSMLSSATMV---ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYL+ NKW+PC+EFE EHGFVYREH NSPGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYPNAFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPS 178

[Close]

BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 279.3 bits (713), Expect = 1.700e-75
Identity = 129/181 (71.27%), Postives = 150/181 (82.87%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++   ++A    S AQA MV PFTGLKS+  FPVT+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSML---SSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP LT  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178

[Close]

BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 278.1 bits (710), Expect = 3.800e-75
Identity = 131/181 (72.38%), Postives = 152/181 (83.98%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS+   ++TAV T S AQA MV PFTGLKS+  FPVT+K N+DITS+ SNGGRV CMK
Sbjct: 1   MASSMF--SSTAVVT-SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETEHGFVYREHHNSPGYY 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE EHGFVYREH N+PGYY
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPEG 180
           DGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIAYKP  
Sbjct: 121 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPS 178

[Close]

BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.200e-73
Identity = 129/186 (69.35%), Postives = 151/186 (81.18%), Query Frame = 1


		  
Query: 1   MASSLMYNATTAVATASVAQANMVGPFTGLKSTVGFPVTKK-NDDITSLASNGGRVQCMK 60
           MASS++   ++A    S AQA MV PFTGLKS+  FPVT+K N DITS+ASNGGRV CMK
Sbjct: 1   MASSML---SSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMK 60

Query: 61  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFE-----TEHGFVYREHHN 120
           VWP    K++ETLSYLP L+  +LA++VDYLL NKW+PC+EFE     T+HGFVYREH N
Sbjct: 61  VWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGN 120

Query: 121 SPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIA 180
           +PGYYDGRYWTMWKLP+FGCTD AQVL E+EECKKEYP AFIRIIGFD+ RQVQC+SFIA
Sbjct: 121 TPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 180

The following BLAST results are available for this feature:

BLAST of Spo21476.1 vs. NCBI nr
BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
BLAST of Spo21476.1 vs. TAIR (Arabidopsis)

BLAST of Spo21476.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902238638\|gb\|KNA25267.1\|	7.0e-103	99.4	hypothetical protein SOVF_0081...	[more]
gi\|902213966\|gb\|KNA17382.1\|	4.1e-95	91.6	hypothetical protein SOVF_0804...	[more]
gi\|3914583\|sp\|Q43832.1\|RBS2_SPIOL	4.5e-94	90.5	RecName: Full=Ribulose bisphos...	[more]
gi\|2529378\|gb\|AAB81105.1\|	5.9e-94	90.5	ribulose 1,5-bisphosphate carb...	[more]
gi\|691189059\|gb\|AIR75139.1\|	6.4e-88	92.7	chloroplast ribulose-1,5-bisph...	[more]

BLAST of Spo21476.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2B5_SPIOL	4.9e-103	99.4	Ribulose bisphosphate carboxyl...	[more]
A0A0K9REV1_SPIOL	2.9e-95	91.6	Ribulose bisphosphate carboxyl...	[more]
A0A0K9RD37_SPIOL	3.2e-94	90.5	Ribulose bisphosphate carboxyl...	[more]
O20253_SPIOL	4.1e-94	90.5	Ribulose bisphosphate carboxyl...	[more]
A0A089VLB2_9CARY	4.4e-88	92.7	Ribulose bisphosphate carboxyl...	[more]

BLAST of Spo21476.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RBS2_SPIOL	2.8e-96	90.5	Ribulose bisphosphate carboxyl...	[more]
RBS3_AMAHP	3.5e-78	75.5	Ribulose bisphosphate carboxyl...	[more]
RBS4_MESCR	1.7e-77	75.1	Ribulose bisphosphate carboxyl...	[more]
RBS3_MESCR	8.6e-77	74.0	Ribulose bisphosphate carboxyl...	[more]
RBS5_MESCR	5.6e-76	75.1	Ribulose bisphosphate carboxyl...	[more]

BLAST of Spo21476.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT1G67090.1	7.7e-76	71.2	ribulose bisphosphate carboxyl...	[more]
AT5G38430.1	1.7e-75	71.2	Ribulose bisphosphate carboxyl...	[more]
AT5G38420.1	3.8e-75	72.3	Ribulose bisphosphate carboxyl...	[more]
AT5G38410.3	1.2e-73	69.3	Ribulose bisphosphate carboxyl...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	GENE3D	3.30.190.10		coord: 58..179 score: 3.3
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	PFAM	PF00101	RuBisCO_small	coord: 69..177 score: 7.8
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	SMART	SM00961	RuBisCO_small_2_a	coord: 68..177 score: 2.2
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	unknown	SSF55239	RuBisCO, small subunit	coord: 58..179 score: 7.59
IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	PFAM	PF12338	RbcS	coord: 2..42 score: 6.6
IPR024681	Ribulose bisphosphate carboxylase, small chain	PRINTS	PR00152	RUBISCOSMALL	coord: 151..177 score: 4.3E-73coord: 95..110 score: 4.3E-73coord: 117..146 score: 4.3E-73coord: 46..64 score: 4.3E-73coord: 67..93 score: 4.3E-73coord: 20..37 score: 4.3
None	No IPR available	PANTHER	PTHR31262	FAMILY NOT NAMED	coord: 2..180 score: 2.7E
None	No IPR available	PANTHER	PTHR31262:SF4	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED	coord: 2..180 score: 2.7E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity