Spo21412.1 (mRNA)

Overview
NameSpo21412.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSalt-induced hydrophilic protein
Locationchr6 : 39051935 .. 39053910 (+)
Sequence length1480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAGTGGCATTTTATATTCCAAATCAAGAAAATACACACAAAAAGGGAGAAAATATTCGTCACGTCCTTCATCCTGAAGCATGAATAGTGAAAATATATTCCCAATTTCACCACTATATAAGCACACCATGGACCATGCTAATTTGTATCTCACTAAAGCAATAATAGTAATCCCCTAAGAAAACCAACAGCAATGGCATACAACCACCCTTATGGAAACAACTACTACGGGGTTGAGAGAGAGGTCATCCGTGATGGTCCATGCGGTGCCTACGCTGCTGACTACAGGGTTGATGAATATGGGAACCGCATCTACCACCACCGCAATGGATTGGGAAATGACGTAACTGAGATTGTGACTGATGTCATCCCTGGCCACCTTAACCACCACCACCACCACCCCCGAAACGGTTTGGGAAATGTTGTAACTGAGGTTGTGACCGATGTTATCCCTGGCCACTACCACCACCAACGCCACCACCCTGGGTTCATTCAGAGGAGGGAAGAGTGCATTGTTGACAGTGCCTATGACCCATACAGGAGGGTATGTGTTTTTTTTAGCTTCTTTTTTTTAAGTCTTTAGTTTTTGGTTTCAACTAGATTTTTCTGACACCCAACAATTAACTAAAGGTATGAAACCATGAAGTATTTCATTTTATTTTTGGCAAGTAAGAAATTTTATTAAAATAAAACAAGCACAAACACCATACATATACAAGCACAAACAAGGACCTCTCCTACCTCAAGCCTCAAACATACCAACTTAGCCAACAGGCCTAACTAACCCAAACAGAACAAAAGTACCATACTACCAATCACTCATTTTATTATCGACTCAAACCATTCCTTGTCATGCAGGGGGACTTTCTTACTCATCATACTTCTTATCCTTGAGCTCACAATCCCCTTAACCCCTTTTAGCTACCGTGTTCATGTTAGTTTTATTATAAGATATTCAAAAGTAGCTTAAGATAATTTGTTTTCCCTCCTGTATCATAATTCTATCAGCTAACTTGCCTTCCATATTTTTTGTACTGCAGATGTACTGAGGGTTAGTACTTGCATGATGCAGAGAATTGACAGCAACCATGGTATTATTAGTATAATAAAAATGTGCTCTTAGCCTCTAAGCATAGGCTAGCTAGTTGTTACGACTTACGGGCAAGGATTCAATACGATGTGTGCTTTTCTATATTGTACTGTAATCATATTTGGTTTGGTTATGTATTTCGGTTTTCTTATGAAGGTATATATGGTTGTTTTCTTTTTAGAAAAAGAGGATTATGTCCTGTCTCTAGAATATGAAACTGCACTTATACTAGCTTTTATATCTCAACTCTCAAGCAATATACAAGGTTATAAATATGAAAACGGTAGAGAACTAACATTCTGCACCTCAAAAAGCACTAGCTTCTGAAACGATACCAGTTCTTGACACAACAGCAAGTCTCTTCTCGATCTATTGCCAAGTCCAGATAGGACATACTGCATCCAACCTGCACCCTAAATTATTTTTGAAATTCTACTTACGGAGAGATCTGAAGCAAATGGATTTTGAGAATTTGTTGGTATTAAGAGAGAACCAATGCTGAATCAATACTCAGTCATTTCTATAGAAATGACAAAAGCGGAGAGGAAAGAAGCCTAATTTGGCCAGCTAATTATAATTACAGATATAATACCTAAGAGCCTATGTCCTGCACATGATATTGGATATAAGGATAGACTACGTACTGAGATCCAAAGTGTTTGATTAGCAAAAATGGAAGCCAGGCACAATAAGACTGTAGTTAAATATCAGTTAAATTTTCTACGGAACTTTTGTGGGAATTATCAGGCTGGAAAAATGATGCCAAACCTGGTTTAGAGGATGGATAACAAGAAGTCTGTTAACAATCCTTTCTTCTATTTTCATAATCTGCAAATTGTGGAGAGATAATTAGAATTAATTTGAATAACAGCTGCAGTTTCTAT

mRNA sequence

TCAAAGTGGCATTTTATATTCCAAATCAAGAAAATACACACAAAAAGGGAGAAAATATTCGTCACGTCCTTCATCCTGAAGCATGAATAGTGAAAATATATTCCCAATTTCACCACTATATAAGCACACCATGGACCATGCTAATTTGTATCTCACTAAAGCAATAATAGTAATCCCCTAAGAAAACCAACAGCAATGGCATACAACCACCCTTATGGAAACAACTACTACGGGGTTGAGAGAGAGGTCATCCGTGATGGTCCATGCGGTGCCTACGCTGCTGACTACAGGGTTGATGAATATGGGAACCGCATCTACCACCACCGCAATGGATTGGGAAATGACGTAACTGAGATTGTGACTGATGTCATCCCTGGCCACCTTAACCACCACCACCACCACCCCCGAAACGGTTTGGGAAATGTTGTAACTGAGGTTGTGACCGATGTTATCCCTGGCCACTACCACCACCAACGCCACCACCCTGGGTTCATTCAGAGGAGGGAAGAGTGCATTGTTGACAGTGCCTATGACCCATACAGGAGGATGTACTGAGGGTTAGTACTTGCATGATGCAGAGAATTGACAGCAACCATGGTATTATTAGTATAATAAAAATGTGCTCTTAGCCTCTAAGCATAGGCTAGCTAGTTGTTACGACTTACGGGCAAGGATTCAATACGATGTGTGCTTTTCTATATTGTACTGTAATCATATTTGGTTTGGTTATGTATTTCGGTTTTCTTATGAAGGTATATATGGTTGTTTTCTTTTTAGAAAAAGAGGATTATGTCCTGTCTCTAGAATATGAAACTGCACTTATACTAGCTTTTATATCTCAACTCTCAAGCAATATACAAGGTTATAAATATGAAAACGGTAGAGAACTAACATTCTGCACCTCAAAAAGCACTAGCTTCTGAAACGATACCAGTTCTTGACACAACAGCAAGTCTCTTCTCGATCTATTGCCAAGTCCAGATAGGACATACTGCATCCAACCTGCACCCTAAATTATTTTTGAAATTCTACTTACGGAGAGATCTGAAGCAAATGGATTTTGAGAATTTGTTGGTATTAAGAGAGAACCAATGCTGAATCAATACTCAGTCATTTCTATAGAAATGACAAAAGCGGAGAGGAAAGAAGCCTAATTTGGCCAGCTAATTATAATTACAGATATAATACCTAAGAGCCTATGTCCTGCACATGATATTGGATATAAGGATAGACTACGTACTGAGATCCAAAGTGTTTGATTAGCAAAAATGGAAGCCAGGCACAATAAGACTGTAGTTAAATATCAGTTAAATTTTCTACGGAACTTTTGTGGGAATTATCAGGCTGGAAAAATGATGCCAAACCTGGTTTAGAGGATGGATAACAAGAAGTCTGTTAACAATCCTTTCTTCTATTTTCATAATCTGCAAATTGTGGAGAGATAATTAGAATTAATTTGAATAACAGCTGCAGTTTCTAT

Coding sequence (CDS)

ATGGCATACAACCACCCTTATGGAAACAACTACTACGGGGTTGAGAGAGAGGTCATCCGTGATGGTCCATGCGGTGCCTACGCTGCTGACTACAGGGTTGATGAATATGGGAACCGCATCTACCACCACCGCAATGGATTGGGAAATGACGTAACTGAGATTGTGACTGATGTCATCCCTGGCCACCTTAACCACCACCACCACCACCCCCGAAACGGTTTGGGAAATGTTGTAACTGAGGTTGTGACCGATGTTATCCCTGGCCACTACCACCACCAACGCCACCACCCTGGGTTCATTCAGAGGAGGGAAGAGTGCATTGTTGACAGTGCCTATGACCCATACAGGAGGATGTACTGA

Protein sequence

MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIPGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21412Spo21412gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21412.1Spo21412.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21412.1.exon.1Spo21412.1.exon.1exon
Spo21412.1.exon.2Spo21412.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21412.1.utr5p.1Spo21412.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21412.1.CDS.1Spo21412.1.CDS.1CDS
Spo21412.1.CDS.2Spo21412.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21412.1.utr3p.1Spo21412.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo21412.1 vs. NCBI nr
Match: gi|902221276|gb|KNA18871.1| (hypothetical protein SOVF_066720 [Spinacia oleracea])

HSP 1 Score: 269.2 bits (687), Expect = 3.300e-69
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

		  

Query: 1   MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP 60
           MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP
Sbjct: 1   MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP 60

Query: 61  GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 120
           GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY
Sbjct: 61  GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 119
[Close]
BLAST of Spo21412.1 vs. NCBI nr
Match: gi|902221279|gb|KNA18874.1| (hypothetical protein SOVF_066750 [Spinacia oleracea])

HSP 1 Score: 147.1 bits (370), Expect = 1.900e-32
Identity = 74/104 (71.15%), Postives = 80/104 (76.92%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           MAY N PYG NYY VEREV+RDGP GAY ADYRVDEYGNRIYHH N LGN +T+IVTDVI
Sbjct: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60

Query: 61  PGHLNHHHHHPRNGLGNVVTE-VVTDVIPGHYHHQRHHPGFIQR 103
           PG     HH  RNGLGNVVT  V TDVIPG++HH  H+P  I R
Sbjct: 61  PG-----HHTSRNGLGNVVTGFVTTDVIPGYHHH--HYPNIIDR 97
[Close]
BLAST of Spo21412.1 vs. NCBI nr
Match: gi|731330786|ref|XP_010676318.1| (PREDICTED: uncharacterized protein LOC104892176 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 131.3 bits (329), Expect = 1.100e-27
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCG-AY-AADYRVDEYGNRIYHHRNGLGNDVTEIVTD 60
           MAY N PYGNNYY VE+EV+R+GP G AY +A+YR+DEYGNR++HHRNGLGN VTE+V++
Sbjct: 1   MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRVHHHRNGLGNVVTEVVSE 60

Query: 61  VIPGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPG-FIQRREECIVDSAYDPYR 117
           VIPG    HHHHP N                H++HQ   P   I+RREE I+D++YDPYR
Sbjct: 61  VIPG----HHHHPHN----------------HHNHQYGRPAEIIERREERIIDNSYDPYR 100
[Close]
BLAST of Spo21412.1 vs. NCBI nr
Match: gi|31879430|dbj|BAC77693.1| (salt-induced hydrophilic protein [Atriplex nummularia])

HSP 1 Score: 124.4 bits (311), Expect = 1.300e-25
Identity = 68/120 (56.67%), Postives = 76/120 (63.33%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           MAY N  YGNNY   EREVIR+ P G Y ADYRVDEYGNRI+HHRNGLGN +TEIV++V 
Sbjct: 1   MAYVNRGYGNNYCEAEREVIREAPYGTYGADYRVDEYGNRIHHHRNGLGNVITEIVSEV- 60

Query: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 120
           P H + HHHH                IPG           I+RREE IVD+AYDPYRR Y
Sbjct: 61  PAHHHQHHHH--------------GGIPGE---------IIERREERIVDAAYDPYRRTY 96
[Close]
BLAST of Spo21412.1 vs. NCBI nr
Match: gi|902221275|gb|KNA18870.1| (hypothetical protein SOVF_066710 [Spinacia oleracea])

HSP 1 Score: 118.2 bits (295), Expect = 9.500e-24
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           M+Y N PY +NYY  E EVIR+GP G+Y+A+YRVDEYGNR+ HH                
Sbjct: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHH---------------- 60

Query: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHH-----PGFIQRREECIVDSAYDP 120
               NHH H   NG+G VV+E+VTDVI G  HH  H+        I+RREE IVDS+YDP
Sbjct: 61  ----NHHRH---NGVGEVVSEIVTDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDP 102
[Close]
BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066720 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.300e-69
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

		  

Query: 1   MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP 60
           MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP
Sbjct: 1   MAYNHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVIP 60

Query: 61  GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 120
           GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY
Sbjct: 61  GHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 119
[Close]
BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIW4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066750 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.300e-32
Identity = 74/104 (71.15%), Postives = 80/104 (76.92%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           MAY N PYG NYY VEREV+RDGP GAY ADYRVDEYGNRIYHH N LGN +T+IVTDVI
Sbjct: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60

Query: 61  PGHLNHHHHHPRNGLGNVVTE-VVTDVIPGHYHHQRHHPGFIQR 103
           PG     HH  RNGLGNVVT  V TDVIPG++HH  H+P  I R
Sbjct: 61  PG-----HHTSRNGLGNVVTGFVTTDVIPGYHHH--HYPNIIDR 97
[Close]
BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F7N2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099100 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.600e-28
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCG-AY-AADYRVDEYGNRIYHHRNGLGNDVTEIVTD 60
           MAY N PYGNNYY VE+EV+R+GP G AY +A+YR+DEYGNR++HHRNGLGN VTE+V++
Sbjct: 1   MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRVHHHRNGLGNVVTEVVSE 60

Query: 61  VIPGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPG-FIQRREECIVDSAYDPYR 117
           VIPG    HHHHP N                H++HQ   P   I+RREE I+D++YDPYR
Sbjct: 61  VIPG----HHHHPHN----------------HHNHQYGRPAEIIERREERIIDNSYDPYR 100
[Close]
BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Match: Q7XZR4_ATRNU (Salt-induced hydrophilic protein OS=Atriplex nummularia GN=AnSIHP1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.300e-26
Identity = 68/120 (56.67%), Postives = 76/120 (63.33%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           MAY N  YGNNY   EREVIR+ P G Y ADYRVDEYGNRI+HHRNGLGN +TEIV++V 
Sbjct: 1   MAYVNRGYGNNYCEAEREVIREAPYGTYGADYRVDEYGNRIHHHRNGLGNVITEIVSEV- 60

Query: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHHPGFIQRREECIVDSAYDPYRRMY 120
           P H + HHHH                IPG           I+RREE IVD+AYDPYRR Y
Sbjct: 61  PAHHHQHHHH--------------GGIPGE---------IIERREERIVDAAYDPYRRTY 96
[Close]
BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066710 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.600e-24
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 1 

		  

Query: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60
           M+Y N PY +NYY  E EVIR+GP G+Y+A+YRVDEYGNR+ HH                
Sbjct: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHH---------------- 60

Query: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHH-----PGFIQRREECIVDSAYDP 120
               NHH H   NG+G VV+E+VTDVI G  HH  H+        I+RREE IVDS+YDP
Sbjct: 61  ----NHHRH---NGVGEVVSEIVTDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDP 102
The following BLAST results are available for this feature:
BLAST of Spo21412.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221276|gb|KNA18871.1|3.3e-69100.hypothetical protein SOVF_0667... [more]
gi|902221279|gb|KNA18874.1|1.9e-3271.1hypothetical protein SOVF_0667... [more]
gi|731330786|ref|XP_010676318.1|1.1e-2756.6PREDICTED: uncharacterized pro... [more]
gi|31879430|dbj|BAC77693.1|1.3e-2556.6salt-induced hydrophilic prote... [more]
gi|902221275|gb|KNA18870.1|9.5e-2451.2hypothetical protein SOVF_0667... [more]
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BLAST of Spo21412.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RH83_SPIOL2.3e-69100.Uncharacterized protein OS=Spi... [more]
A0A0K9RIW4_SPIOL1.3e-3271.1Uncharacterized protein OS=Spi... [more]
A0A0J8F7N2_BETVU7.6e-2856.6Uncharacterized protein OS=Bet... [more]
Q7XZR4_ATRNU9.3e-2656.6Salt-induced hydrophilic prote... [more]
A0A0K9RHB3_SPIOL6.6e-2451.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo21412.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21412.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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