Spo21020.1 (mRNA) | SpinachBase

Overview


Name	Spo21020.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L4, chloroplastic
Location	chr1 : 42045070 .. 42048226 (-)
Sequence length	1496

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACTCGAAAAAATCACTAGCAGAGTAGAAGTAGAAAAAGGAGGTGATTTCCTCTCTCCCTCTAATCTGTCTTTCTATCTCTGGATAAGCCTCTTTCTCCTCCTCCCAAAACCTCACTCTCCCAACGACAATGGCGACTTCTACTTCTTCATCTCTTTCTCTCTCATTCTTCTCTTCCTCCCTCTTCTCCTCCAAATCCCGCAATTTTTCTTCCAAACCCATCCTCAAACTCCCCTCTTCCTCACATTCCCAAACCTCACTTTCTCTTTCCATCAAATCCGAGCTCATCCCTCTCCCAATCCTCAATTTCTCCGGCGAGAAAGTCGGCGAAACGTTTCTCAACCTCAAAACGGCCCCACCCGAAACGGCTCGCGCCGTCGTCCACCGTGGCCTCATCACCCACCTCCAGAACAAACGTCGTGGGACTGCTTCCACCCTCACCCGTGCTGAGGTCCGTGGTGGTGGTAGAAAGCCCTATCCACAGAAGAAAACAGGTCGAGCCCGGCGTGGTTCGCAGCGTTCCCCACTCAGGCCCGGTGGTGGGGTTATTTTTGGCCCGAAGCCCAGAGATTGGACCATTAAGATGAACAAGAAGGAGAGGCGTCTGGCCCTTTCGACTGCCATTGCTAGCGCGGTGGGGAACTCCTTTGTTGTGGAGGAATTCGCGGAAAATTTCGAGAAGCCGAAAACGAAGGATTTTATTGCTGCAATGCAGAGGTGGGGGCTTGACCCGGCTGAGAAATCCTTGTTCTTTTTGATGGATTTGGTAGAAAATGTGGAGAAATCCGGGAGGAATATCAGGACTTTGAAGTTATTAACTCCGAGGAGTTTGAATCTGTTTGATGTTCTGAATGCTGAAAAGTTAGTTTTTACTGAAGGAACTATTCAGTATTTGAATCAGAGGTATGGGGTTGATACTTTGGAAGACGAGGACGAGGAAGAAGAAGAGGAGGAGGAAGGAGAAGAGGTTGATGATGGCGTGGAAGGTAATGGTCTATAATCTTGTGCCTTCTTTTGTAGTTTTTAATTTTGTTCAAGTAGTATGATTGGAGCTTAAATTTGCAATTGAACATTTGAATGTCGATTAGCTTTGATGGGTGAAGTCGATTAAATTCCATCTACATCATTGCATTTTGTGAATTGTGACTCTACCTGCTCCAAAGAAATAATGTTTTGAAACTTTAGAAGTATTGTTTTGTCTTTATGATTTTGATTTGATTTTGTTGGTGAATAATTAATTTGTGGTTTTATGTTGAATGAGAGATTATTCGGAATAAGACAGGTTTAGTAGGAAGATTATGGAGAAAAAAAATAGGAAGAAGTGGAGGTCTAATTTTGATTTCGTGATTTTGATTATGTCATACGAGTAATTGTATTTGTTATGTTTTCTGTTATTTGGAGTCCTTGTGGGAAATTTTGGGTGTTGAATGAATAGGGTACCAAGAGTTGAAGATTATATCATGCAAATGAAGGTGTGAGCTCTGTTATCCAAATCAATGTGGTGATTGGAATTGTTTAGGATTTTTATCTGGGGGGAGGGTGAGGATTGCTAAACCTCAAGTGACTTGTGTCCATATGGACACAAGTGACTCAATACAATTATTTTTAGTACCAATATAGCATATTTCAGTACCAATAACACAAATAATTTGTATTGGTACTTCTTAGCAATGTATTGGTATACCAATACCATACTAGTCTTAGTACCAATACCAAATTAGCGGGTACCAATTACAAGCCACTTGTGTCCATATGGACACAAGTCACTTGAGGCCAAGACTTCCTCGGGGAGGGTTGGGTATGTTGCTGAAAACTACTCATTCAATGCGATGCTATGCTCGTGGGATTAGCATCTTGATTCAGTGGTGTGTTGGCTGAGGTTTGAGTATAAAAATGAGTAGTGCACTTATACACAACCCACCTGAAAAAACCAATGAGCTTCTAATGTTACATTCTTCTCCCTTTATGAACTTGATGTACATATTTACTTTGTTAATGGCCATCTATTGTCCTGCCTGCTTGATCATGGACCTAATAAATACTCCTTCCGTCCCTTTTTAATCTTGACTGAGATATGGCTCCGGAGAGAGTATTTTTTTGTAGACACATATGAAGTGGATTTATGTCTTGTATTAACATCTTTGCCAAAAACAGTTGGTGCACTTCCAGATAGCTATTATATTTGACTAATCTCTAGAAAAAGGATGGTGTATGAAAGTTTTTAACAGCGAATTTTAGTTTCGATATTAGGGCACCCGCACCTCTAGGGAATAGGATCAGGAAACTATAGGCAAGTAGATCGAATGAGCTTGCCTGAACTGCTGCTAGATACCATCAATTCAAAGTATGTTAAAAGTGTAGGCCATACGGTTTCCACCTGTTGGGTGATGGTTGTCATGTGAGGTCTTGTGCCGAGTGAGCTAGATACTTTTTGGAGGGTTGAGAGATAGGAAACTTCATGAAATTGGTTAAGTCTTAAGAGATGGAATTCGCACTTTAAGTCTTTTTCCTCTTGCTGCCTATGTTGTTCACTGATGCGATAGTGCTCAAGATTGATTAAAATTGCCTCTGTCACAGCATTTTTCTTACTTGAATCGCTTTGTTTTTGTCTAATTTCCTACATTGTCTTAATTTTGTGCTGTGGCAGATGGAACTCCTGAACCTGCAGAGTGAACAAGCAGACTGAGAGTACGTTTTAGCTAAGAGGAATGTTAATCGTAGGGAGATCAGCAGACCCTGACTTAATACATGCTGCAAGTGCAAAGATTTTGGTACACGTGTGTGTTGTATTTTGATGAGTTTTTAAACGAAACATTCATTGTATACAATGGTCATTCTGTAATGGAGATATTTGTATGTTTTCGTTGTTCATATCGACGACTACGAGTAGTAAGTATTCCATTTATTGTATATGGTGTTCAGCTATTCGGAAAATATATGTTTTGTTTGTCTCATGTTGAGTTTACTGATAGTAAGAACTTGATTTCAATCAATTGATTATACACCCAGAATCTATTAGTGATGGAATCAGAATTAAAAAGAGAAGTATCGGAATTCTTCTTCGGTGTGGTTAAAGATTTACGGTCGCATATGAGGATTTCTTTTTACCTTTTCATCCTTGATTTTGAGGGTATTATTTGTGTGGGGTGGTGATAA

mRNA sequence

AACACTCGAAAAAATCACTAGCAGAGTAGAAGTAGAAAAAGGAGGTGATTTCCTCTCTCCCTCTAATCTGTCTTTCTATCTCTGGATAAGCCTCTTTCTCCTCCTCCCAAAACCTCACTCTCCCAACGACAATGGCGACTTCTACTTCTTCATCTCTTTCTCTCTCATTCTTCTCTTCCTCCCTCTTCTCCTCCAAATCCCGCAATTTTTCTTCCAAACCCATCCTCAAACTCCCCTCTTCCTCACATTCCCAAACCTCACTTTCTCTTTCCATCAAATCCGAGCTCATCCCTCTCCCAATCCTCAATTTCTCCGGCGAGAAAGTCGGCGAAACGTTTCTCAACCTCAAAACGGCCCCACCCGAAACGGCTCGCGCCGTCGTCCACCGTGGCCTCATCACCCACCTCCAGAACAAACGTCGTGGGACTGCTTCCACCCTCACCCGTGCTGAGGTCCGTGGTGGTGGTAGAAAGCCCTATCCACAGAAGAAAACAGGTCGAGCCCGGCGTGGTTCGCAGCGTTCCCCACTCAGGCCCGGTGGTGGGGTTATTTTTGGCCCGAAGCCCAGAGATTGGACCATTAAGATGAACAAGAAGGAGAGGCGTCTGGCCCTTTCGACTGCCATTGCTAGCGCGGTGGGGAACTCCTTTGTTGTGGAGGAATTCGCGGAAAATTTCGAGAAGCCGAAAACGAAGGATTTTATTGCTGCAATGCAGAGGTGGGGGCTTGACCCGGCTGAGAAATCCTTGTTCTTTTTGATGGATTTGGTAGAAAATGTGGAGAAATCCGGGAGGAATATCAGGACTTTGAAGTTATTAACTCCGAGGAGTTTGAATCTGTTTGATGTTCTGAATGCTGAAAAGTTAGTTTTTACTGAAGGAACTATTCAGTATTTGAATCAGAGGTATGGGGTTGATACTTTGGAAGACGAGGACGAGGAAGAAGAAGAGGAGGAGGAAGGAGAAGAGGTTGATGATGGCGTGGAAGATGGAACTCCTGAACCTGCAGAGTGAACAAGCAGACTGAGAGTACGTTTTAGCTAAGAGGAATGTTAATCGTAGGGAGATCAGCAGACCCTGACTTAATACATGCTGCAAGTGCAAAGATTTTGGTACACGTGTGTGTTGTATTTTGATGAGTTTTTAAACGAAACATTCATTGTATACAATGGTCATTCTGTAATGGAGATATTTGTATGTTTTCGTTGTTCATATCGACGACTACGAGTAGTAAGTATTCCATTTATTGTATATGGTGTTCAGCTATTCGGAAAATATATGTTTTGTTTGTCTCATGTTGAGTTTACTGATAGTAAGAACTTGATTTCAATCAATTGATTATACACCCAGAATCTATTAGTGATGGAATCAGAATTAAAAAGAGAAGTATCGGAATTCTTCTTCGGTGTGGTTAAAGATTTACGGTCGCATATGAGGATTTCTTTTTACCTTTTCATCCTTGATTTTGAGGGTATTATTTGTGTGGGGTGGTGATAA

Coding sequence (CDS)

ATGGCGACTTCTACTTCTTCATCTCTTTCTCTCTCATTCTTCTCTTCCTCCCTCTTCTCCTCCAAATCCCGCAATTTTTCTTCCAAACCCATCCTCAAACTCCCCTCTTCCTCACATTCCCAAACCTCACTTTCTCTTTCCATCAAATCCGAGCTCATCCCTCTCCCAATCCTCAATTTCTCCGGCGAGAAAGTCGGCGAAACGTTTCTCAACCTCAAAACGGCCCCACCCGAAACGGCTCGCGCCGTCGTCCACCGTGGCCTCATCACCCACCTCCAGAACAAACGTCGTGGGACTGCTTCCACCCTCACCCGTGCTGAGGTCCGTGGTGGTGGTAGAAAGCCCTATCCACAGAAGAAAACAGGTCGAGCCCGGCGTGGTTCGCAGCGTTCCCCACTCAGGCCCGGTGGTGGGGTTATTTTTGGCCCGAAGCCCAGAGATTGGACCATTAAGATGAACAAGAAGGAGAGGCGTCTGGCCCTTTCGACTGCCATTGCTAGCGCGGTGGGGAACTCCTTTGTTGTGGAGGAATTCGCGGAAAATTTCGAGAAGCCGAAAACGAAGGATTTTATTGCTGCAATGCAGAGGTGGGGGCTTGACCCGGCTGAGAAATCCTTGTTCTTTTTGATGGATTTGGTAGAAAATGTGGAGAAATCCGGGAGGAATATCAGGACTTTGAAGTTATTAACTCCGAGGAGTTTGAATCTGTTTGATGTTCTGAATGCTGAAAAGTTAGTTTTTACTGAAGGAACTATTCAGTATTTGAATCAGAGGTATGGGGTTGATACTTTGGAAGACGAGGACGAGGAAGAAGAAGAGGAGGAGGAAGGAGAAGAGGTTGATGATGGCGTGGAAGATGGAACTCCTGAACCTGCAGAGTGA

Protein sequence

MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21020	Spo21020	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21020.1	Spo21020.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21020.1.utr5p.1	Spo21020.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21020.1.CDS.2	Spo21020.1.CDS.2	CDS
Spo21020.1.CDS.1	Spo21020.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21020.1.utr3p.1	Spo21020.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21020.1.exon.2	Spo21020.1.exon.2	exon
Spo21020.1.exon.1	Spo21020.1.exon.1	exon

Homology

[Close]

BLAST of Spo21020.1 vs. NCBI nr
Match: gi|902233135|gb|KNA22937.1| (hypothetical protein SOVF_029280 [Spinacia oleracea])

HSP 1 Score: 540.0 bits (1390), Expect = 2.500e-150
Identity = 292/293 (99.66%), Postives = 292/293 (99.66%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
           SGEKVGETFLNLKTAP ETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK
Sbjct: 61  SGEKVGETFLNLKTAPSETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180
           TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE
Sbjct: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240
           NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 293

[Close]

BLAST of Spo21020.1 vs. NCBI nr
Match: gi|3914665|sp|O49937.1|RK4_SPIOL (RecName: Full=50S ribosomal protein L4, chloroplastic; Short=R-protein L4; Flags: Precursor)

HSP 1 Score: 538.1 bits (1385), Expect = 9.500e-150
Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
           SGEKVGETFLNLKTAPPE ARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180
           TGRARRGSQ SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240
           NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 293

[Close]

BLAST of Spo21020.1 vs. NCBI nr
Match: gi|2792020|emb|CAA63651.1| (ribosomal protein L4 [Spinacia oleracea])

HSP 1 Score: 535.4 bits (1378), Expect = 6.200e-149
Identity = 290/293 (98.98%), Postives = 290/293 (98.98%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
           SGEKVGETFLNLKTAPPE ARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180
           TGRARRGSQ SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240
           NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEE EEGEEVDDGVEDGTPEPAE
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEGEEGEEVDDGVEDGTPEPAE 293

[Close]

BLAST of Spo21020.1 vs. NCBI nr
Match: gi|731348660|ref|XP_010685600.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 409.5 bits (1051), Expect = 5.100e-111
Identity = 227/291 (78.01%), Postives = 254/291 (87.29%), Query Frame = 1


		  
Query: 4   STSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGE 63
           +TSSSLSLSFFSSSLFSSKS  FS KP LKLP S   Q  LSLS KS+L  LPILNFSGE
Sbjct: 7   ATSSSLSLSFFSSSLFSSKSHQFSLKPTLKLPLSKTPQ--LSLSTKSQLTTLPILNFSGE 66

Query: 64  KVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGR 123
           K GET LNLKTAPPETARAVVHR LITH+QNKRRGTASTLTRAEVRGGGRKPYPQKKTGR
Sbjct: 67  KTGETSLNLKTAPPETARAVVHRALITHMQNKRRGTASTLTRAEVRGGGRKPYPQKKTGR 126

Query: 124 ARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENF- 183
           ARRGSQRSPLRPGGGV+FGPKPRDWTIKMNKKE+RLALSTAIASA+GN+FVVE+F ENF 
Sbjct: 127 ARRGSQRSPLRPGGGVVFGPKPRDWTIKMNKKEKRLALSTAIASALGNAFVVEDFGENFE 186

Query: 184 EKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNA 243
           EKPKTK+FI AM RWGL P+EKS+FF+ +L ENVEKSGRNIRTLK+LTPRSLNL+DVL A
Sbjct: 187 EKPKTKEFIDAMLRWGLSPSEKSMFFMTELEENVEKSGRNIRTLKMLTPRSLNLYDVLGA 246

Query: 244 EKLVFTEGTIQYLNQRYGVDTLEDEDEEEEE---EEEGEEVDDGVEDGTPE 291
           EKLVFT G + YLN RYGV + +D+D++++E   +E+GEE +DGV + T E
Sbjct: 247 EKLVFTLGAVDYLNNRYGVQSFDDDDDDDQEDQLQEDGEE-EDGVTEETEE 294

[Close]

BLAST of Spo21020.1 vs. NCBI nr
Match: gi|703130657|ref|XP_010104677.1| (50S ribosomal protein L4 [Morus notabilis])

HSP 1 Score: 353.6 bits (906), Expect = 3.300e-94
Identity = 198/294 (67.35%), Postives = 237/294 (80.61%), Query Frame = 1


		  
Query: 2   ATSTSSSLSLSFFSSSLFSSKSRNFSSKPIL--KLPSSSHSQTSLSLSIKSELIPLPILN 61
           AT+T+ S SLSFFSSS+F + S+  + KP L  K P+S  S T   LSI SEL  LP+L+
Sbjct: 5   ATTTAPS-SLSFFSSSVFFTSSQRQTLKPFLSFKTPNSLKSPTPKPLSIISELATLPVLS 64

Query: 62  FSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQK 121
           F+GEKVGETFL+LK+APPETARAVVHRG+IT LQNKRRGTASTLTR EVRGGGRKPYPQK
Sbjct: 65  FTGEKVGETFLDLKSAPPETARAVVHRGIITDLQNKRRGTASTLTRGEVRGGGRKPYPQK 124

Query: 122 KTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFA 181
           KTGRAR GS RSPLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F 
Sbjct: 125 KTGRARSGSIRSPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFG 184

Query: 182 ENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDV 241
           + FE+PKTK+FIAA++RWG+DP EKS F +MD+ EN+  S RNI TLK+LTPR+LNLFD+
Sbjct: 185 DKFERPKTKEFIAALKRWGIDPKEKSTFLMMDVTENLVLSSRNIGTLKILTPRTLNLFDI 244

Query: 242 LNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           LNA+KLV T G + YLN+RYGVD  E E EE++EE   EE   G  D  P  AE
Sbjct: 245 LNADKLVLTPGAVYYLNERYGVD-FEGESEEDDEESAEEE---GTVDENPSSAE 293

[Close]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVQ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029280 PE=3 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 1.700e-150
Identity = 292/293 (99.66%), Postives = 292/293 (99.66%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
           SGEKVGETFLNLKTAP ETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK
Sbjct: 61  SGEKVGETFLNLKTAPSETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180
           TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE
Sbjct: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240
           NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 293

[Close]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EQ55_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172550 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 3.600e-111
Identity = 227/291 (78.01%), Postives = 254/291 (87.29%), Query Frame = 1


		  
Query: 4   STSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGE 63
           +TSSSLSLSFFSSSLFSSKS  FS KP LKLP S   Q  LSLS KS+L  LPILNFSGE
Sbjct: 7   ATSSSLSLSFFSSSLFSSKSHQFSLKPTLKLPLSKTPQ--LSLSTKSQLTTLPILNFSGE 66

Query: 64  KVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGR 123
           K GET LNLKTAPPETARAVVHR LITH+QNKRRGTASTLTRAEVRGGGRKPYPQKKTGR
Sbjct: 67  KTGETSLNLKTAPPETARAVVHRALITHMQNKRRGTASTLTRAEVRGGGRKPYPQKKTGR 126

Query: 124 ARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENF- 183
           ARRGSQRSPLRPGGGV+FGPKPRDWTIKMNKKE+RLALSTAIASA+GN+FVVE+F ENF 
Sbjct: 127 ARRGSQRSPLRPGGGVVFGPKPRDWTIKMNKKEKRLALSTAIASALGNAFVVEDFGENFE 186

Query: 184 EKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNA 243
           EKPKTK+FI AM RWGL P+EKS+FF+ +L ENVEKSGRNIRTLK+LTPRSLNL+DVL A
Sbjct: 187 EKPKTKEFIDAMLRWGLSPSEKSMFFMTELEENVEKSGRNIRTLKMLTPRSLNLYDVLGA 246

Query: 244 EKLVFTEGTIQYLNQRYGVDTLEDEDEEEEE---EEEGEEVDDGVEDGTPE 291
           EKLVFT G + YLN RYGV + +D+D++++E   +E+GEE +DGV + T E
Sbjct: 247 EKLVFTLGAVDYLNNRYGVQSFDDDDDDDQEDQLQEDGEE-EDGVTEETEE 294

[Close]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Match: W9S021_9ROSA (50S ribosomal protein L4 OS=Morus notabilis GN=L484_022055 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.300e-94
Identity = 198/294 (67.35%), Postives = 237/294 (80.61%), Query Frame = 1


		  
Query: 2   ATSTSSSLSLSFFSSSLFSSKSRNFSSKPIL--KLPSSSHSQTSLSLSIKSELIPLPILN 61
           AT+T+ S SLSFFSSS+F + S+  + KP L  K P+S  S T   LSI SEL  LP+L+
Sbjct: 5   ATTTAPS-SLSFFSSSVFFTSSQRQTLKPFLSFKTPNSLKSPTPKPLSIISELATLPVLS 64

Query: 62  FSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQK 121
           F+GEKVGETFL+LK+APPETARAVVHRG+IT LQNKRRGTASTLTR EVRGGGRKPYPQK
Sbjct: 65  FTGEKVGETFLDLKSAPPETARAVVHRGIITDLQNKRRGTASTLTRGEVRGGGRKPYPQK 124

Query: 122 KTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFA 181
           KTGRAR GS RSPLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F 
Sbjct: 125 KTGRARSGSIRSPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFG 184

Query: 182 ENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDV 241
           + FE+PKTK+FIAA++RWG+DP EKS F +MD+ EN+  S RNI TLK+LTPR+LNLFD+
Sbjct: 185 DKFERPKTKEFIAALKRWGIDPKEKSTFLMMDVTENLVLSSRNIGTLKILTPRTLNLFDI 244

Query: 242 LNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           LNA+KLV T G + YLN+RYGVD  E E EE++EE   EE   G  D  P  AE
Sbjct: 245 LNADKLVLTPGAVYYLNERYGVD-FEGESEEDDEESAEEE---GTVDENPSSAE 293

[Close]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Match: V4L1K0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008395mg PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.500e-90
Identity = 178/281 (63.35%), Postives = 226/281 (80.43%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MA+S ++  SLSFFSSSLF S S  F  K  + +      + S  LS+ S+L  LPI++F
Sbjct: 1   MASSATAPNSLSFFSSSLFLSSSHQFP-KTYISVAKLGSGRVSKPLSVASQLATLPIISF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
            GEK+GET+L+LKTAP +TARAVVHR ++T LQNKRRGTASTLTR EVRGGG KPY QKK
Sbjct: 61  EGEKIGETYLDLKTAPEDTARAVVHRAIVTDLQNKRRGTASTLTRGEVRGGGIKPYAQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEF 180
           TG ARRGSQR+PLRPGGG +FGPKPRDW+IK+N+KE+RLA+STAI+SA     + VVEEF
Sbjct: 121 TGHARRGSQRTPLRPGGGAVFGPKPRDWSIKINRKEKRLAISTAISSAASAEGAIVVEEF 180

Query: 181 AENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFD 240
            + FEKPKTKDF+AAM+RWGLDP EK++F +MD+ ENV KSGRNI TL++LTPR+LNLFD
Sbjct: 181 GDKFEKPKTKDFLAAMKRWGLDPKEKAMFLMMDVEENVAKSGRNIGTLRMLTPRTLNLFD 240

Query: 241 VLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEE 280
           +LN++KLV T   +++LN RYGVD LE +++E+++E+  EE
Sbjct: 241 ILNSDKLVLTPAAVEFLNARYGVDALETDEDEDDDEDSTEE 280

[Close]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Match: A0A061GWI6_THECC (50S ribosomal protein L4 isoform 1 OS=Theobroma cacao GN=TCM_041662 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 4.500e-90
Identity = 186/281 (66.19%), Postives = 224/281 (79.72%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHS---QTSLSLSIKSELIPLPI 60
           MATST +  SLSFFSSSLF S        P  KLP  S S    ++ +L I S+L  L I
Sbjct: 1   MATSTPTPTSLSFFSSSLFLSS-------PSTKLPCLSLSFKTSSNPNLCIASQLSTLSI 60

Query: 61  LNFSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYP 120
           L+F+GEK+GET+L+LK+APPETARAVVHR +IT  QNKRRGTASTLTR+EVRGGG+KPYP
Sbjct: 61  LSFTGEKIGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRSEVRGGGKKPYP 120

Query: 121 QKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEE 180
           QKKTGRARRGS RSPLRPGGGVIFGPKPRDW+IK+NKKE+RLA+STA++SA  N+ VVEE
Sbjct: 121 QKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTALSSAAQNTIVVEE 180

Query: 181 FAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLF 240
           F + FEKPKTKDF+ A++RWGLDP +KS+F +M++ ENV  S RNI TL++LTPR+LNLF
Sbjct: 181 FGDKFEKPKTKDFMEALKRWGLDPKQKSMFLMMEVPENVNLSSRNIGTLRMLTPRTLNLF 240

Query: 241 DVLNAEKLVFTEGTIQYLNQRYGVDTLED-EDEEEEEEEEG 278
           D+LN + LV T   + YLN RYG D   D ED++EEEEEEG
Sbjct: 241 DILNCDNLVLTPDAVDYLNGRYGEDYEGDTEDDDEEEEEEG 274

[Close]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 5.900e-152
Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
           SGEKVGETFLNLKTAPPE ARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180
           TGRARRGSQ SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240
           NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 294
           NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPAE 293

[Close]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.600e-91
Identity = 179/282 (63.48%), Postives = 224/282 (79.43%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MA+S ++  SLSFFSSSLF S S     K  + +      + S  LS+ S+L  LPIL+F
Sbjct: 1   MASSATAPNSLSFFSSSLFLSSSHQIP-KTYISVSKLGSGRVSKPLSVSSQLATLPILSF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
            GEKVGET+L+LK AP +TARAVVHR ++T L NKRRGTASTLTR EVRGGG KPY QKK
Sbjct: 61  EGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAI---ASAVGNSFVVEE 180
           TG ARRGSQR+PLRPGGGV+FGP+P+DW+IK+N+KE++LA+STA+   ASA G + VVEE
Sbjct: 121 TGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEE 180

Query: 181 FAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLF 240
           F E FEKPKTKDF+AAMQRWGLDP EK++F ++D+ ENV KS RNI TL++LTPR+LNLF
Sbjct: 181 FGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLF 240

Query: 241 DVLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEE 280
           D+LNA+KLV T   +++LN RYGVD +E+ED++E+E E  EE
Sbjct: 241 DILNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281

[Close]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.700e-85
Identity = 170/277 (61.37%), Postives = 221/277 (79.78%), Query Frame = 1


		  
Query: 10  SLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGEKVGETF 69
           SLSFFSSS+F S     SSK +L       S  +++ +I+SE+  +PIL+F G +VG T 
Sbjct: 4   SLSFFSSSIFLSNPNIQSSKHLLFRSPKQLSVAAIA-TIRSEVATIPILSFDGAEVGSTT 63

Query: 70  LNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQ 129
           LNLK+AP +TARAVVHRGL T L+N+RRGTASTLTR+EVRGGG KPYPQKKTGRARRGS 
Sbjct: 64  LNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSN 123

Query: 130 RSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENFEKPKTKD 189
           R+PLRPGGGV+FGPKP+DW++K+NKKE+RLA+STA++SA  N+ VVEEF + FEKPKTK+
Sbjct: 124 RTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTKE 183

Query: 190 FIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTE 249
           FI  M+RWGLDP EKSLF + D+ +NV  S RNI TLK+LTPR+LNLFD+L++EKLV T+
Sbjct: 184 FIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTK 243

Query: 250 GTIQYLNQRYGVDT-LEDEDEEEEEEEEGEEVDDGVE 286
             + +LN+RYG +   EDE+E+++E+ +G E ++  E
Sbjct: 244 SAVDFLNERYGDENEWEDEEEDDQEDNDGGEAEESTE 279

[Close]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.100e-56
Identity = 112/209 (53.59%), Postives = 147/209 (70.33%), Query Frame = 1


		  
Query: 52  LIPLPILNFSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGG 111
           ++   + ++ G   GE  L+L TA PETA  +VHR L+  L N R+GT ST TRAEVRGG
Sbjct: 1   MVACVVKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGG 60

Query: 112 GRKPYPQKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGN 171
           GRKP+ QK TGRAR GS RSPL  GGGVIFGPKPRD++ KMN+KERRLAL TA+ S V +
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVED 120

Query: 172 SFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTP 231
             VV++FA++  +PKTK+ + A+QRWG++P +K L    D+ E V  S RN+ TLKLL  
Sbjct: 121 LIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRA 180

Query: 232 RSLNLFDVLNAEKLVFTEGTIQYLNQRYG 261
             LN+FD+L A+++V T G I  + + YG
Sbjct: 181 DQLNVFDLLYADRIVATTGAIAKIQEVYG 209

[Close]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Match: RL4_MICAN (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.800e-55
Identity = 109/209 (52.15%), Postives = 147/209 (70.33%), Query Frame = 1


		  
Query: 52  LIPLPILNFSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGG 111
           ++   + N+ GE+ G   L LKTA PETA+ ++HR +++HL   R+G AS+ TR+EVRGG
Sbjct: 1   MVNYTVKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGG 60

Query: 112 GRKPYPQKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGN 171
           GRKP+ QK TGRAR GS RSPL  GGGVIFGPKPRD+ +K+N+KE+RLAL TA+ S   N
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADN 120

Query: 172 SFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTP 231
             VVE FAE F +PKTK+  AA+ RWG  P EK L  L ++ ENV  SGRNI  LK++  
Sbjct: 121 FIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRA 180

Query: 232 RSLNLFDVLNAEKLVFTEGTIQYLNQRYG 261
            SLN++DV+ A++++ T   +  + + YG
Sbjct: 181 DSLNVYDVILADRVIATAAALAKIEEVYG 209

[Close]

BLAST of Spo21020.1 vs. TAIR (Arabidopsis)
Match: AT1G07320.1 (ribosomal protein L4)

HSP 1 Score: 336.7 bits (862), Expect = 1.500e-92
Identity = 179/282 (63.48%), Postives = 224/282 (79.43%), Query Frame = 1


		  
Query: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60
           MA+S ++  SLSFFSSSLF S S     K  + +      + S  LS+ S+L  LPIL+F
Sbjct: 1   MASSATAPNSLSFFSSSLFLSSSHQIP-KTYISVSKLGSGRVSKPLSVSSQLATLPILSF 60

Query: 61  SGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120
            GEKVGET+L+LK AP +TARAVVHR ++T L NKRRGTASTLTR EVRGGG KPY QKK
Sbjct: 61  EGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKK 120

Query: 121 TGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAI---ASAVGNSFVVEE 180
           TG ARRGSQR+PLRPGGGV+FGP+P+DW+IK+N+KE++LA+STA+   ASA G + VVEE
Sbjct: 121 TGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEE 180

Query: 181 FAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLF 240
           F E FEKPKTKDF+AAMQRWGLDP EK++F ++D+ ENV KS RNI TL++LTPR+LNLF
Sbjct: 181 FGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLF 240

Query: 241 DVLNAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEE 280
           D+LNA+KLV T   +++LN RYGVD +E+ED++E+E E  EE
Sbjct: 241 DILNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSEE 281

[Close]

BLAST of Spo21020.1 vs. TAIR (Arabidopsis)
Match: AT2G20060.1 (Ribosomal protein L4/L1 family)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-18
Identity = 63/207 (30.43%), Postives = 106/207 (51.21%), Query Frame = 1


		  
Query: 55  LPILNFSGEKVGETFLNLKTAPPETARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRK 114
           +P+ NF  E+ G   L          + ++H  +   L  +++GT ST T +EV G GRK
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 115 PYPQKKTGRARRGSQRSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIA--SAVGNS 174
           P+ QK TGRAR G+ R P   GG V+ GPKPR   IKMNK+ RRL L  A+   +A G  
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 175 FVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLV-ENVEKSGRNIRTLKLLTP 234
            V ++        KTK+ +    +  ++  +K L      + E ++ + +N+  + ++  
Sbjct: 211 LVFDDL--GLPTHKTKNIVNYYNQ--MENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPS 270

Query: 235 RSLNLFDVLNAEKLVFTEGTIQYLNQR 259
             LN++ +L  + L+ +   +  + +R
Sbjct: 271 IGLNVYSILLHDTLLMSRDAVNKIVER 293

The following BLAST results are available for this feature:

BLAST of Spo21020.1 vs. NCBI nr
BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
BLAST of Spo21020.1 vs. TAIR (Arabidopsis)

BLAST of Spo21020.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233135\|gb\|KNA22937.1\|	2.5e-150	99.6	hypothetical protein SOVF_0292...	[more]
gi\|3914665\|sp\|O49937.1\|RK4_SPIOL	9.5e-150	99.3	RecName: Full=50S ribosomal pr...	[more]
gi\|2792020\|emb\|CAA63651.1\|	6.2e-149	98.9	ribosomal protein L4 [Spinacia...	[more]
gi\|731348660\|ref\|XP_010685600.1\|	5.1e-111	78.0	PREDICTED: 50S ribosomal prote...	[more]
gi\|703130657\|ref\|XP_010104677.1\|	3.3e-94	67.3	50S ribosomal protein L4 [Moru...	[more]

BLAST of Spo21020.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RVQ9_SPIOL	1.7e-150	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8EQ55_BETVU	3.6e-111	78.0	Uncharacterized protein OS=Bet...	[more]
W9S021_9ROSA	2.3e-94	67.3	50S ribosomal protein L4 OS=Mo...	[more]
V4L1K0_EUTSA	4.5e-90	63.3	Uncharacterized protein OS=Eut...	[more]
A0A061GWI6_THECC	4.5e-90	66.1	50S ribosomal protein L4 isofo...	[more]

BLAST of Spo21020.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RK4_SPIOL	5.9e-152	99.3	50S ribosomal protein L4, chlo...	[more]
RK4_ARATH	2.6e-91	63.4	50S ribosomal protein L4, chlo...	[more]
RK4_TOBAC	3.7e-85	61.3	50S ribosomal protein L4, chlo...	[more]
RL4_THEEB	2.1e-56	53.5	50S ribosomal protein L4 OS=Th...	[more]
RL4_MICAN	1.8e-55	52.1	50S ribosomal protein L4 OS=Mi...	[more]

BLAST of Spo21020.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G07320.1	1.5e-92	63.4	ribosomal protein L4	[more]
AT2G20060.1	1.4e-18	30.4	Ribosomal protein L4/L1 family	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 79..257 score: 3.2
IPR013005	50S ribosomal protein uL4	HAMAP	MF_01328_B	Ribosomal_L4_B	coord: 60..260 score: 28
IPR013005	50S ribosomal protein uL4	PANTHER	PTHR10746	50S RIBOSOMAL PROTEIN L4	coord: 1..293 score: 9.4E
IPR013005	50S ribosomal protein uL4	TIGRFAMs	TIGR03953	TIGR03953	coord: 78..256 score: 1.2
IPR023574	Ribosomal protein L4 domain	GENE3D	3.40.1370.10		coord: 109..259 score: 1.6
IPR023574	Ribosomal protein L4 domain	unknown	SSF52166	Ribosomal protein L4	coord: 55..260 score: 2.75
None	No IPR available	unknown	Coil	Coil	coord: 261..281 scor
None	No IPR available	PANTHER	PTHR10746:SF10	50S RIBOSOMAL PROTEIN L4, CHLOROPLASTIC	coord: 1..293 score: 9.4E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000311	plastid large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008266	poly(U) RNA binding
molecular_function	GO:0019843	rRNA binding